Wall clock time and date at job start Tue Mar 31 2020 12:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.46700 * 2 1 4 4 O 1.21289 * 120.00231 * 359.97438 * 3 2 1 5 5 C 1.46868 * 119.99359 * 179.97438 * 3 2 1 6 6 C 1.40052 * 120.09605 * 359.72856 * 5 3 2 7 7 C 1.36606 * 119.89876 * 179.80940 * 6 5 3 8 8 C 1.39257 * 120.09860 * 0.44387 * 7 6 5 9 9 N 1.39156 * 119.90719 * 179.76611 * 8 7 6 10 10 C 1.34774 * 120.00155 * 213.65730 * 9 8 7 11 11 O 1.21357 * 120.00011 * 5.27140 * 10 9 8 12 12 C 1.49362 * 119.99918 * 185.28145 * 10 9 8 13 13 O 1.21357 * 120.00071 * 359.97438 * 12 10 9 14 14 N 1.34774 * 119.99918 * 179.97438 * 12 10 9 15 15 C 1.46500 * 120.00103 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.47119 * 179.97438 * 15 14 12 17 17 C 1.50704 * 109.47009 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99538 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99833 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99801 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00133 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46859 * 90.00079 * 21 19 17 23 23 H 1.48496 * 109.46922 * 209.99959 * 21 19 17 24 24 H 1.48503 * 109.46940 * 330.00040 * 21 19 17 25 25 C 1.39258 * 120.19057 * 359.78566 * 8 7 6 26 26 C 1.36607 * 120.09673 * 359.97438 * 25 8 7 27 27 H 1.08993 * 109.47392 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47060 * 300.00237 * 1 2 3 29 29 H 1.09005 * 109.46768 * 59.99758 * 1 2 3 30 30 H 1.08996 * 109.46882 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.46935 * 240.00275 * 2 1 3 32 32 H 1.08004 * 120.05154 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.95035 * 180.20797 * 7 6 5 34 34 H 0.97005 * 119.99267 * 33.64957 * 9 8 7 35 35 H 0.96997 * 120.00194 * 359.97438 * 14 12 10 36 36 H 1.09005 * 109.47077 * 299.99642 * 15 14 12 37 37 H 1.08999 * 109.47321 * 59.99618 * 15 14 12 38 38 H 1.08989 * 109.47231 * 299.99640 * 16 15 14 39 39 H 1.09007 * 109.46831 * 60.00074 * 16 15 14 40 40 H 0.96994 * 120.00019 * 179.97438 * 20 19 17 41 41 H 1.07997 * 119.95029 * 179.97438 * 25 8 7 42 42 H 1.07996 * 120.05008 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3428 -0.0005 5 6 3.4762 1.6892 0.0006 6 6 4.3881 0.6262 0.0069 7 6 5.7303 0.8804 0.0034 8 6 6.1923 2.1941 0.0030 9 7 7.5604 2.4484 0.0044 10 6 8.0446 3.5272 0.6511 11 8 7.3013 4.2231 1.3114 12 6 9.4961 3.8663 0.5549 13 8 10.2394 3.1703 -0.1051 14 7 9.9802 4.9454 1.2012 15 6 11.4039 5.2778 1.1074 16 6 11.6884 6.5385 1.9262 17 6 13.1531 6.8800 1.8302 18 1 13.8147 6.2601 1.2434 19 6 13.6481 7.9845 2.4906 20 7 14.9262 8.2828 2.4063 21 14 12.5035 9.0571 3.5048 22 1 12.4588 8.5517 4.9005 23 1 13.0026 10.4557 3.5006 24 1 11.1392 9.0166 2.9197 25 6 5.2891 3.2541 0.0016 26 6 3.9452 3.0089 0.0001 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 4.0306 -0.3930 0.0117 33 1 6.4342 0.0613 0.0049 34 1 8.1655 1.8491 -0.4600 35 1 9.3860 5.5020 1.7284 36 1 11.9967 4.4499 1.4965 37 1 11.6677 5.4549 0.0647 38 1 11.0957 7.3661 1.5367 39 1 11.4245 6.3617 2.9690 40 1 15.2744 9.0600 2.8706 41 1 5.6517 4.2714 0.0017 42 1 3.2454 3.8315 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000627464408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:34 Heat of formation + Delta-G solvation = -86.799682 kcal Electronic energy + Delta-G solvation = -24625.799194 eV Core-core repulsion = 20763.856552 eV Total energy + Delta-G solvation = -3861.942642 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36847 -40.28508 -39.15851 -38.10921 -35.78199 -34.91782 -33.41025 -32.89004 -31.54424 -30.63283 -30.33576 -26.67018 -25.44591 -24.27507 -23.10631 -22.48290 -20.99805 -20.52607 -19.95730 -18.88287 -17.90989 -17.31113 -16.96599 -16.40127 -16.22848 -15.86517 -15.85530 -15.14907 -14.95575 -14.58266 -14.38077 -14.23543 -13.94156 -13.84385 -13.76341 -13.31114 -13.25062 -12.92724 -12.67033 -12.65876 -12.23110 -11.84003 -11.61977 -11.61783 -11.56109 -11.31942 -10.83761 -10.51690 -10.40363 -10.08603 -10.01184 -9.68094 -9.49066 -9.39790 -8.92764 -8.66781 -8.62739 -6.17080 -4.18357 0.12494 0.99355 1.24872 2.01138 2.17077 3.06734 3.22849 3.31324 3.32241 3.41863 3.50555 3.60711 4.27374 4.33270 4.39240 4.46477 4.53936 4.65012 4.74869 4.85162 4.99247 5.04218 5.15932 5.24393 5.37644 5.47493 5.54251 5.65721 5.75880 5.77960 5.85928 5.90413 6.00674 6.03541 6.32280 6.39325 6.44175 6.66178 6.96551 7.10676 7.17141 7.29485 7.53815 7.59746 7.99876 8.35978 8.85699 9.42588 10.95571 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030999 B = 0.001943 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.045989 B =14406.044811 C =15147.835242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.170 4.170 3 C 0.397 3.603 4 O -0.455 6.455 5 C -0.195 4.195 6 C -0.050 4.050 7 C -0.157 4.157 8 C 0.184 3.816 9 N -0.650 5.650 10 C 0.510 3.490 11 O -0.493 6.493 12 C 0.501 3.499 13 O -0.523 6.523 14 N -0.686 5.686 15 C 0.126 3.874 16 C -0.024 4.024 17 C -0.526 4.526 18 H 0.077 0.923 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.265 1.265 25 C -0.137 4.137 26 C -0.036 4.036 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.427 0.573 35 H 0.410 0.590 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.021 0.979 40 H 0.266 0.734 41 H 0.142 0.858 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.353 -18.758 -5.701 32.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.275 3.725 4 O -0.331 6.331 5 C -0.196 4.196 6 C -0.068 4.068 7 C -0.178 4.178 8 C 0.089 3.911 9 N -0.296 5.296 10 C 0.292 3.708 11 O -0.365 6.365 12 C 0.280 3.720 13 O -0.401 6.401 14 N -0.337 5.337 15 C 0.005 3.995 16 C -0.062 4.062 17 C -0.564 4.564 18 H 0.095 0.905 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.708 3.292 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.190 1.190 25 C -0.157 4.157 26 C -0.055 4.055 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.265 0.735 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.160 0.840 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.510 -18.061 -5.627 31.759 hybrid contribution -0.198 0.548 0.638 0.864 sum -25.708 -17.513 -4.990 31.504 Atomic orbital electron populations 1.21598 0.93620 1.01836 1.03155 1.21995 0.98414 0.95751 1.04624 1.22418 0.87758 0.91245 0.71081 1.90534 1.58368 1.47784 1.36405 1.20511 0.95023 0.94342 1.09764 1.20965 0.92063 0.98794 0.95016 1.20676 0.96492 0.94833 1.05751 1.18062 0.82798 0.93967 0.96302 1.43179 1.06512 1.27638 1.52315 1.20721 0.89975 0.80892 0.79190 1.90793 1.59477 1.48835 1.37436 1.19652 0.87231 0.83090 0.82016 1.90778 1.58666 1.50224 1.40396 1.46229 1.12879 1.26362 1.48253 1.21780 0.76240 0.99533 1.01940 1.19833 0.98965 0.92223 0.95143 1.20856 0.91273 1.12077 1.32228 0.90508 1.24980 0.94989 0.97149 0.95987 1.69892 1.12818 1.27565 1.43111 0.86773 0.81582 0.79967 0.80923 1.20131 1.21171 1.18981 1.20964 0.92531 0.99675 1.02495 1.21063 0.95158 0.96300 0.92997 0.92010 0.92086 0.92104 0.88284 0.88289 0.84524 0.84596 0.73468 0.75436 0.91033 0.91016 0.95665 0.96105 0.92445 0.84002 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.20 37.16 0.34 -0.46 16 2 C -0.17 -0.82 5.02 -27.88 -0.14 -0.96 16 3 C 0.40 3.32 7.11 -30.82 -0.22 3.11 16 4 O -0.46 -5.34 15.96 5.55 0.09 -5.25 16 5 C -0.19 -1.64 5.87 -105.04 -0.62 -2.25 16 6 C -0.05 -0.31 9.42 -39.49 -0.37 -0.68 16 7 C -0.16 -1.11 9.90 -39.79 -0.39 -1.50 16 8 C 0.18 1.77 6.27 -83.78 -0.53 1.25 16 9 N -0.65 -6.52 5.30 -10.28 -0.05 -6.57 16 10 C 0.51 6.54 7.61 -11.63 -0.09 6.46 16 11 O -0.49 -7.12 14.15 5.49 0.08 -7.04 16 12 C 0.50 7.48 7.89 -11.63 -0.09 7.39 16 13 O -0.52 -8.78 16.48 5.49 0.09 -8.68 16 14 N -0.69 -10.87 5.55 -60.76 -0.34 -11.20 16 15 C 0.13 2.39 5.61 -4.04 -0.02 2.36 16 16 C -0.02 -0.52 4.16 -27.88 -0.12 -0.64 16 17 C -0.53 -14.25 9.66 -34.44 -0.33 -14.58 16 18 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 20 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 21 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 25 C -0.14 -1.45 8.58 -39.79 -0.34 -1.79 16 26 C -0.04 -0.36 9.55 -39.49 -0.38 -0.74 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.10 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.10 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.14 0.41 7.03 -52.48 -0.37 0.04 16 33 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.43 3.49 8.29 -40.82 -0.34 3.15 16 35 H 0.41 5.97 7.94 -40.82 -0.32 5.64 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.03 0.55 7.20 -51.94 -0.37 0.17 16 39 H 0.02 0.44 7.57 -51.92 -0.39 0.05 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.14 1.65 6.41 -52.49 -0.34 1.31 16 42 H 0.14 1.34 7.64 -52.49 -0.40 0.94 16 LS Contribution 364.16 15.07 5.49 5.49 Total: -1.00 -32.87 364.16 -7.43 -40.30 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.49 Total: 3.96 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -3.39 Total: -1.14 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.38 Total: -43.71 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.26 Total: -20.98 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.87 -7.43 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627464408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.498 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds