Wall clock time and date at job start Tue Mar 31 2020 12:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.46700 * 2 1 4 4 O 1.21289 * 120.00231 * 359.97438 * 3 2 1 5 5 C 1.46868 * 119.99359 * 179.97438 * 3 2 1 6 6 C 1.40052 * 120.09605 * 359.72856 * 5 3 2 7 7 C 1.36606 * 119.89876 * 179.80940 * 6 5 3 8 8 C 1.39257 * 120.09860 * 0.44387 * 7 6 5 9 9 N 1.39156 * 119.90719 * 179.76611 * 8 7 6 10 10 C 1.34774 * 120.00155 * 213.65730 * 9 8 7 11 11 O 1.21357 * 120.00011 * 5.27140 * 10 9 8 12 12 C 1.49362 * 119.99918 * 185.28145 * 10 9 8 13 13 O 1.21357 * 120.00071 * 359.97438 * 12 10 9 14 14 N 1.34774 * 119.99918 * 179.97438 * 12 10 9 15 15 C 1.46500 * 120.00103 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.47119 * 179.97438 * 15 14 12 17 17 C 1.50704 * 109.47009 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99538 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99833 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99801 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00133 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46859 * 90.00079 * 21 19 17 23 23 H 1.48496 * 109.46922 * 209.99959 * 21 19 17 24 24 H 1.48503 * 109.46940 * 330.00040 * 21 19 17 25 25 C 1.39258 * 120.19057 * 359.78566 * 8 7 6 26 26 C 1.36607 * 120.09673 * 359.97438 * 25 8 7 27 27 H 1.08993 * 109.47392 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47060 * 300.00237 * 1 2 3 29 29 H 1.09005 * 109.46768 * 59.99758 * 1 2 3 30 30 H 1.08996 * 109.46882 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.46935 * 240.00275 * 2 1 3 32 32 H 1.08004 * 120.05154 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.95035 * 180.20797 * 7 6 5 34 34 H 0.97005 * 119.99267 * 33.64957 * 9 8 7 35 35 H 0.96997 * 120.00194 * 359.97438 * 14 12 10 36 36 H 1.09005 * 109.47077 * 299.99642 * 15 14 12 37 37 H 1.08999 * 109.47321 * 59.99618 * 15 14 12 38 38 H 1.08989 * 109.47231 * 299.99640 * 16 15 14 39 39 H 1.09007 * 109.46831 * 60.00074 * 16 15 14 40 40 H 0.96994 * 120.00019 * 179.97438 * 20 19 17 41 41 H 1.07997 * 119.95029 * 179.97438 * 25 8 7 42 42 H 1.07996 * 120.05008 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3428 -0.0005 5 6 3.4762 1.6892 0.0006 6 6 4.3881 0.6262 0.0069 7 6 5.7303 0.8804 0.0034 8 6 6.1923 2.1941 0.0030 9 7 7.5604 2.4484 0.0044 10 6 8.0446 3.5272 0.6511 11 8 7.3013 4.2231 1.3114 12 6 9.4961 3.8663 0.5549 13 8 10.2394 3.1703 -0.1051 14 7 9.9802 4.9454 1.2012 15 6 11.4039 5.2778 1.1074 16 6 11.6884 6.5385 1.9262 17 6 13.1531 6.8800 1.8302 18 1 13.8147 6.2601 1.2434 19 6 13.6481 7.9845 2.4906 20 7 14.9262 8.2828 2.4063 21 14 12.5035 9.0571 3.5048 22 1 12.4588 8.5517 4.9005 23 1 13.0026 10.4557 3.5006 24 1 11.1392 9.0166 2.9197 25 6 5.2891 3.2541 0.0016 26 6 3.9452 3.0089 0.0001 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 4.0306 -0.3930 0.0117 33 1 6.4342 0.0613 0.0049 34 1 8.1655 1.8491 -0.4600 35 1 9.3860 5.5020 1.7284 36 1 11.9967 4.4499 1.4965 37 1 11.6677 5.4549 0.0647 38 1 11.0957 7.3661 1.5367 39 1 11.4245 6.3617 2.9690 40 1 15.2744 9.0600 2.8706 41 1 5.6517 4.2714 0.0017 42 1 3.2454 3.8315 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000627464408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:33 Heat of formation + Delta-G solvation = -109.977765 kcal Electronic energy + Delta-G solvation = -24626.804271 eV Core-core repulsion = 20763.856552 eV Total energy + Delta-G solvation = -3862.947719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.31543 -41.07477 -40.16691 -39.00324 -37.05380 -36.03365 -34.81102 -33.89121 -32.21121 -32.12799 -31.28085 -27.92290 -26.51926 -25.24597 -23.98580 -23.19817 -22.66331 -21.57588 -20.59884 -19.94887 -19.04921 -18.73333 -18.01861 -17.42912 -17.31520 -16.69091 -16.41228 -16.33442 -16.22587 -16.02160 -15.43142 -15.27416 -15.05273 -14.77313 -14.61222 -14.47662 -14.29737 -13.90176 -13.70493 -13.41292 -13.11171 -13.09024 -12.94444 -12.64046 -12.27701 -12.23434 -12.20999 -11.98540 -11.80177 -11.61995 -11.51882 -10.91038 -10.80121 -10.65735 -10.30784 -10.14120 -9.37006 -8.31216 -6.37944 -0.60156 0.21798 0.36981 1.07423 1.38568 1.39555 1.40308 1.50892 1.97246 2.35016 2.46227 2.76053 3.04235 3.05383 3.23068 3.72106 3.85649 4.07003 4.22683 4.23657 4.24381 4.32448 4.36911 4.37620 4.45153 4.71014 4.80351 4.92655 4.94200 5.01601 5.04558 5.09661 5.10904 5.21416 5.26906 5.34686 5.35644 5.38498 5.57086 5.71906 5.83002 6.16979 6.23644 6.53612 6.57862 6.69269 6.79102 7.26807 8.84924 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030999 B = 0.001943 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.045989 B =14406.044811 C =15147.835242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.165 4.165 3 C 0.395 3.605 4 O -0.501 6.501 5 C -0.201 4.201 6 C -0.033 4.033 7 C -0.145 4.145 8 C 0.165 3.835 9 N -0.633 5.633 10 C 0.518 3.482 11 O -0.512 6.512 12 C 0.506 3.494 13 O -0.541 6.541 14 N -0.685 5.685 15 C 0.142 3.858 16 C -0.019 4.019 17 C -0.536 4.536 18 H 0.037 0.963 19 C 0.009 3.991 20 N -0.947 5.947 21 Si 0.951 3.049 22 H -0.266 1.266 23 H -0.287 1.287 24 H -0.242 1.242 25 C -0.153 4.153 26 C -0.055 4.055 27 H 0.084 0.916 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.183 0.817 33 H 0.169 0.831 34 H 0.436 0.564 35 H 0.418 0.582 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.268 0.732 41 H 0.123 0.877 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.594 -21.396 -5.287 35.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.201 4.201 3 C 0.276 3.724 4 O -0.380 6.380 5 C -0.202 4.202 6 C -0.051 4.051 7 C -0.165 4.165 8 C 0.070 3.930 9 N -0.280 5.280 10 C 0.300 3.700 11 O -0.386 6.386 12 C 0.286 3.714 13 O -0.419 6.419 14 N -0.337 5.337 15 C 0.019 3.981 16 C -0.056 4.056 17 C -0.574 4.574 18 H 0.056 0.944 19 C -0.189 4.189 20 N -0.586 5.586 21 Si 0.774 3.226 22 H -0.191 1.191 23 H -0.212 1.212 24 H -0.165 1.165 25 C -0.173 4.173 26 C -0.074 4.074 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.200 0.800 33 H 0.187 0.813 34 H 0.277 0.723 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.140 0.860 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -27.781 -20.751 -5.238 35.069 hybrid contribution 0.493 1.247 0.420 1.406 sum -27.288 -19.503 -4.818 33.886 Atomic orbital electron populations 1.21623 0.94500 1.02755 1.01611 1.22088 0.97634 0.93224 1.07194 1.23049 0.87382 0.92608 0.69337 1.90529 1.59267 1.49486 1.38668 1.20745 0.95811 0.94257 1.09420 1.21426 0.91156 1.00108 0.92432 1.21068 0.97517 0.94249 1.03662 1.18257 0.81983 0.95001 0.97766 1.43011 1.07091 1.26581 1.51328 1.20170 0.88529 0.81658 0.79657 1.90801 1.59373 1.49765 1.38663 1.19950 0.88183 0.82239 0.81010 1.90769 1.59519 1.50681 1.40978 1.45980 1.11632 1.27116 1.48933 1.21324 0.78071 0.97996 1.00718 1.19706 0.95615 0.93824 0.96490 1.21201 0.93612 1.11469 1.31167 0.94424 1.25964 0.96601 0.98843 0.97448 1.70050 1.15178 1.28594 1.44827 0.85656 0.80164 0.77468 0.79341 1.19107 1.21245 1.16481 1.20854 0.93137 0.99367 1.03933 1.21050 0.94764 0.97263 0.94284 0.89742 0.93790 0.93650 0.85528 0.85305 0.80008 0.81309 0.72293 0.74470 0.91832 0.91977 0.94659 0.94716 0.92327 0.85955 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.20 71.98 0.66 -0.67 16 2 C -0.16 -0.98 5.02 29.85 0.15 -0.83 16 3 C 0.39 5.99 7.11 27.95 0.20 6.19 16 4 O -0.50 -11.95 15.96 -3.06 -0.05 -12.00 16 5 C -0.20 -2.98 5.87 -20.14 -0.12 -3.10 16 6 C -0.03 -0.27 9.42 22.33 0.21 -0.06 16 7 C -0.15 -1.46 9.90 22.13 0.22 -1.24 16 8 C 0.16 2.86 6.27 38.47 0.24 3.10 16 9 N -0.63 -11.61 5.30 -304.79 -1.61 -13.23 16 10 C 0.52 12.79 7.61 87.24 0.66 13.45 16 11 O -0.51 -14.54 14.15 -3.27 -0.05 -14.58 16 12 C 0.51 14.66 7.89 87.24 0.69 15.35 16 13 O -0.54 -17.71 16.48 -3.27 -0.05 -17.76 16 14 N -0.68 -21.05 5.55 -464.49 -2.58 -23.63 16 15 C 0.14 5.32 5.61 86.38 0.48 5.80 16 16 C -0.02 -0.80 4.16 29.85 0.12 -0.68 16 17 C -0.54 -29.58 9.66 25.60 0.25 -29.33 16 18 H 0.04 2.30 7.99 -2.91 -0.02 2.27 16 19 C 0.01 0.52 5.47 84.65 0.46 0.98 16 20 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 21 Si 0.95 42.26 27.47 68.60 1.88 44.14 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 25 C -0.15 -3.24 8.58 22.13 0.19 -3.05 16 26 C -0.05 -1.09 9.55 22.33 0.21 -0.88 16 27 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.04 0.54 8.10 -2.39 -0.02 0.52 16 29 H 0.04 0.54 8.10 -2.38 -0.02 0.52 16 30 H 0.13 0.14 8.07 -2.39 -0.02 0.12 16 31 H 0.13 0.07 8.09 -2.39 -0.02 0.06 16 32 H 0.18 -0.16 7.03 -2.91 -0.02 -0.18 16 33 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 34 H 0.44 6.16 8.29 -92.70 -0.77 5.39 16 35 H 0.42 11.60 7.94 -92.71 -0.74 10.87 16 36 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.04 1.46 7.20 -2.39 -0.02 1.44 16 39 H 0.03 1.41 7.57 -2.38 -0.02 1.40 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.12 3.00 6.41 -2.91 -0.02 2.98 16 42 H 0.12 2.68 7.64 -2.91 -0.02 2.65 16 Total: -1.00 -74.99 364.16 1.99 -73.00 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -0.49 Total: 16.65 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 4.64 Total: 5.03 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -3.89 Total: -94.48 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -0.15 Total: -44.34 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Total: -74.99 1.99 -73.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627464408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.981 kcal (2) G-P(sol) polarization free energy of solvation -74.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds