Wall clock time and date at job start Tue Mar 31 2020 12:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47053 * 2 1 4 4 O 1.21300 * 119.99824 * 0.02562 * 3 2 1 5 5 C 1.46858 * 120.00268 * 180.02562 * 3 2 1 6 6 C 1.40058 * 120.09033 * 359.72511 * 5 3 2 7 7 C 1.36608 * 119.89838 * 179.81222 * 6 5 3 8 8 C 1.39265 * 120.09684 * 0.44125 * 7 6 5 9 9 N 1.39148 * 119.90281 * 179.76306 * 8 7 6 10 10 C 1.34778 * 120.00161 * 213.46784 * 9 8 7 11 11 O 1.21359 * 119.99755 * 5.16925 * 10 9 8 12 12 C 1.49368 * 120.00192 * 185.17345 * 10 9 8 13 13 O 1.21359 * 120.00053 * 359.97438 * 12 10 9 14 14 N 1.34772 * 119.99862 * 180.02562 * 12 10 9 15 15 C 1.46500 * 119.99865 * 179.97438 * 14 12 10 16 16 H 1.09005 * 109.47241 * 35.00151 * 15 14 12 17 17 C 1.52996 * 109.47414 * 274.99892 * 15 14 12 18 18 C 1.50702 * 109.47030 * 154.99928 * 15 14 12 19 19 H 1.07994 * 119.99959 * 35.30621 * 18 15 14 20 20 C 1.37884 * 119.99917 * 215.30713 * 18 15 14 21 21 N 1.31514 * 120.00002 * 185.79853 * 20 18 15 22 22 Si 1.86793 * 119.99951 * 5.79381 * 20 18 15 23 23 H 1.48502 * 109.47263 * 85.15854 * 22 20 18 24 24 H 1.48509 * 109.47232 * 205.15644 * 22 20 18 25 25 H 1.48501 * 109.47340 * 325.15618 * 22 20 18 26 26 C 1.39251 * 120.18957 * 359.79154 * 8 7 6 27 27 C 1.36605 * 120.09926 * 359.97438 * 26 8 7 28 28 H 1.08995 * 109.46899 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47174 * 299.99499 * 1 2 3 30 30 H 1.08995 * 109.47409 * 59.99479 * 1 2 3 31 31 H 1.08996 * 109.47752 * 119.99822 * 2 1 3 32 32 H 1.09002 * 109.47174 * 240.00501 * 2 1 3 33 33 H 1.07999 * 120.05077 * 0.02562 * 6 5 3 34 34 H 1.07995 * 119.95414 * 180.20868 * 7 6 5 35 35 H 0.97001 * 120.00094 * 33.47059 * 9 8 7 36 36 H 0.97004 * 120.00405 * 0.02562 * 14 12 10 37 37 H 1.09001 * 109.47060 * 65.35599 * 17 15 14 38 38 H 1.09002 * 109.47348 * 185.35800 * 17 15 14 39 39 H 1.09000 * 109.47117 * 305.35649 * 17 15 14 40 40 H 0.97000 * 120.00143 * 179.97438 * 21 20 18 41 41 H 1.08002 * 119.95223 * 179.97438 * 26 8 7 42 42 H 1.08002 * 120.04733 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2440 2.3428 0.0005 5 6 3.4762 1.6893 -0.0006 6 6 4.3880 0.6263 0.0047 7 6 5.7303 0.8804 0.0003 8 6 6.1922 2.1942 -0.0002 9 7 7.5603 2.4485 0.0003 10 6 8.0447 3.5292 0.6436 11 8 7.3011 4.2282 1.3003 12 6 9.4966 3.8667 0.5482 13 8 10.2402 3.1675 -0.1082 14 7 9.9810 4.9471 1.1920 15 6 11.4051 5.2778 1.0989 16 1 11.7734 5.0219 0.1054 17 6 12.1828 4.4846 2.1510 18 6 11.5951 6.7532 1.3403 19 1 10.9666 7.2694 2.0508 20 6 12.5713 7.4440 0.6541 21 7 12.8140 8.7032 0.9457 22 14 13.5492 6.5913 -0.6898 23 1 12.8008 6.6666 -1.9702 24 1 14.8652 7.2615 -0.8455 25 1 13.7590 5.1679 -0.3220 26 6 5.2891 3.2541 -0.0005 27 6 3.9452 3.0090 -0.0009 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 4.0306 -0.3929 0.0088 34 1 6.4342 0.0614 0.0009 35 1 8.1654 1.8480 -0.4624 36 1 9.3868 5.5054 1.7176 37 1 12.1237 3.4208 1.9209 38 1 13.2261 4.8001 2.1461 39 1 11.7524 4.6679 3.1355 40 1 13.5010 9.1891 0.4632 41 1 5.6515 4.2715 -0.0005 42 1 3.2454 3.8316 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000627510816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:49 Heat of formation + Delta-G solvation = -85.199692 kcal Electronic energy + Delta-G solvation = -25234.949495 eV Core-core repulsion = 21373.076233 eV Total energy + Delta-G solvation = -3861.873261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14479 -40.12097 -38.93322 -37.89721 -35.59100 -34.77955 -33.32687 -32.48029 -31.41576 -30.46676 -30.00221 -26.19555 -25.45628 -24.63331 -23.27770 -22.47227 -20.91947 -19.94564 -19.79546 -18.93343 -17.86256 -17.11915 -16.88953 -16.09277 -15.89508 -15.78081 -15.61995 -15.30689 -14.64972 -14.51077 -14.20283 -13.95434 -13.71030 -13.56318 -13.34905 -13.13015 -12.84808 -12.63933 -12.58041 -12.54425 -12.15021 -11.65022 -11.60849 -11.55144 -11.39377 -11.20551 -10.96107 -10.73540 -10.64882 -9.99265 -9.96306 -9.45332 -9.35735 -9.27954 -8.81084 -8.48800 -8.40861 -6.33331 -4.38596 0.26371 1.12218 1.52926 2.16410 2.43658 3.18107 3.26537 3.31196 3.37422 3.58981 3.69659 3.84409 4.22222 4.39786 4.57048 4.62555 4.71965 4.77083 4.84978 4.98153 5.09836 5.10581 5.20692 5.34177 5.44464 5.54042 5.66702 5.78928 5.83373 5.93464 6.05283 6.14384 6.17680 6.36599 6.50253 6.59003 6.70404 6.82083 6.99944 7.14490 7.26759 7.31497 7.58627 7.92495 8.32556 8.45937 8.69357 9.26038 10.77924 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.032911 B = 0.002245 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.572424 B =12470.019391 C =12814.383933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.170 4.170 3 C 0.397 3.603 4 O -0.457 6.457 5 C -0.198 4.198 6 C -0.050 4.050 7 C -0.160 4.160 8 C 0.188 3.812 9 N -0.653 5.653 10 C 0.508 3.492 11 O -0.494 6.494 12 C 0.494 3.506 13 O -0.539 6.539 14 N -0.661 5.661 15 C 0.227 3.773 16 H 0.056 0.944 17 C -0.149 4.149 18 C -0.535 4.535 19 H 0.082 0.918 20 C 0.083 3.917 21 N -0.882 5.882 22 Si 0.874 3.126 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.259 1.259 26 C -0.138 4.138 27 C -0.036 4.036 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.425 0.575 36 H 0.407 0.593 37 H 0.031 0.969 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.270 0.730 41 H 0.143 0.857 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.602 -19.405 -2.789 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.276 3.724 4 O -0.332 6.332 5 C -0.200 4.200 6 C -0.069 4.069 7 C -0.181 4.181 8 C 0.092 3.908 9 N -0.299 5.299 10 C 0.291 3.709 11 O -0.366 6.366 12 C 0.273 3.727 13 O -0.418 6.418 14 N -0.310 5.310 15 C 0.126 3.874 16 H 0.074 0.926 17 C -0.207 4.207 18 C -0.572 4.572 19 H 0.100 0.900 20 C -0.123 4.123 21 N -0.517 5.517 22 Si 0.700 3.300 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.184 1.184 26 C -0.158 4.158 27 C -0.054 4.054 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.264 0.736 36 H 0.243 0.757 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.161 0.839 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.777 -18.635 -2.796 25.906 hybrid contribution 0.767 -0.381 -0.670 1.088 sum -17.010 -19.015 -3.466 25.748 Atomic orbital electron populations 1.21595 0.93672 1.01771 1.03146 1.21992 0.98354 0.95844 1.04588 1.22407 0.87805 0.91180 0.71056 1.90533 1.58384 1.47785 1.36531 1.20477 0.94929 0.94360 1.10208 1.20943 0.92086 0.98691 0.95132 1.20667 0.96443 0.94852 1.06092 1.18095 0.83050 0.93893 0.95745 1.43250 1.06309 1.27719 1.52648 1.21018 0.90449 0.80568 0.78878 1.90772 1.59609 1.48633 1.37596 1.19747 0.86791 0.83713 0.82488 1.90726 1.58701 1.50629 1.41743 1.46749 1.13019 1.24483 1.46791 1.19391 0.75509 0.95968 0.96537 0.92635 1.22231 1.00957 0.97742 0.99806 1.20963 1.19832 0.90666 1.25784 0.89971 1.24953 0.96349 0.94613 0.96354 1.69874 1.32046 1.09200 1.40601 0.86894 0.79776 0.80542 0.82775 1.19730 1.20951 1.18388 1.20997 0.92498 0.99823 1.02459 1.21059 0.95174 0.96246 0.92961 0.92062 0.92092 0.92117 0.88320 0.88334 0.84653 0.84708 0.73588 0.75728 0.95039 0.92081 0.93266 0.92018 0.83890 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.20 37.16 0.34 -0.56 16 2 C -0.17 -0.97 5.02 -27.88 -0.14 -1.11 16 3 C 0.40 3.73 7.11 -30.82 -0.22 3.51 16 4 O -0.46 -5.80 15.96 5.54 0.09 -5.71 16 5 C -0.20 -1.91 5.87 -105.05 -0.62 -2.52 16 6 C -0.05 -0.37 9.42 -39.49 -0.37 -0.74 16 7 C -0.16 -1.36 9.90 -39.79 -0.39 -1.75 16 8 C 0.19 2.14 6.27 -83.78 -0.53 1.61 16 9 N -0.65 -7.95 5.30 -10.28 -0.05 -8.01 16 10 C 0.51 7.86 7.61 -11.62 -0.09 7.77 16 11 O -0.49 -8.38 14.13 5.49 0.08 -8.30 16 12 C 0.49 9.01 7.85 -11.63 -0.09 8.92 16 13 O -0.54 -10.69 16.15 5.49 0.09 -10.60 16 14 N -0.66 -13.11 5.06 -55.39 -0.28 -13.40 16 15 C 0.23 5.16 2.24 -69.08 -0.16 5.01 16 16 H 0.06 1.35 4.67 -51.93 -0.24 1.10 16 17 C -0.15 -3.06 9.47 37.16 0.35 -2.71 16 18 C -0.53 -13.93 9.04 -34.44 -0.31 -14.25 16 19 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 20 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 21 N -0.88 -25.29 13.96 55.43 0.77 -24.52 16 22 Si 0.87 20.57 27.03 -169.99 -4.59 15.98 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.26 -5.93 6.77 56.52 0.38 -5.55 16 26 C -0.14 -1.70 8.58 -39.79 -0.34 -2.04 16 27 C -0.04 -0.40 9.54 -39.49 -0.38 -0.78 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.10 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.10 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.14 0.55 7.03 -52.49 -0.37 0.18 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.43 4.39 8.29 -40.82 -0.34 4.05 16 36 H 0.41 7.67 8.06 -40.82 -0.33 7.34 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.14 1.96 6.40 -52.49 -0.34 1.62 16 42 H 0.14 1.52 7.64 -52.49 -0.40 1.12 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -31.51 362.61 -6.86 -38.37 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.39 Total: 8.22 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -3.04 Total: 2.49 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.44 Total: -45.92 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: 0.25 Total: -24.61 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.59 Total: 15.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.51 -6.86 -38.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627510816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.827 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds