Wall clock time and date at job start Tue Mar 31 2020 12:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47053 * 2 1 4 4 O 1.21300 * 119.99824 * 0.02562 * 3 2 1 5 5 C 1.46858 * 120.00268 * 180.02562 * 3 2 1 6 6 C 1.40058 * 120.09033 * 359.72511 * 5 3 2 7 7 C 1.36608 * 119.89838 * 179.81222 * 6 5 3 8 8 C 1.39265 * 120.09684 * 0.44125 * 7 6 5 9 9 N 1.39148 * 119.90281 * 179.76306 * 8 7 6 10 10 C 1.34778 * 120.00161 * 213.46784 * 9 8 7 11 11 O 1.21359 * 119.99755 * 5.16925 * 10 9 8 12 12 C 1.49368 * 120.00192 * 185.17345 * 10 9 8 13 13 O 1.21359 * 120.00053 * 359.97438 * 12 10 9 14 14 N 1.34772 * 119.99862 * 180.02562 * 12 10 9 15 15 C 1.46500 * 119.99865 * 179.97438 * 14 12 10 16 16 H 1.09005 * 109.47241 * 35.00151 * 15 14 12 17 17 C 1.52996 * 109.47414 * 274.99892 * 15 14 12 18 18 C 1.50702 * 109.47030 * 154.99928 * 15 14 12 19 19 H 1.07994 * 119.99959 * 35.30621 * 18 15 14 20 20 C 1.37884 * 119.99917 * 215.30713 * 18 15 14 21 21 N 1.31514 * 120.00002 * 185.79853 * 20 18 15 22 22 Si 1.86793 * 119.99951 * 5.79381 * 20 18 15 23 23 H 1.48502 * 109.47263 * 85.15854 * 22 20 18 24 24 H 1.48509 * 109.47232 * 205.15644 * 22 20 18 25 25 H 1.48501 * 109.47340 * 325.15618 * 22 20 18 26 26 C 1.39251 * 120.18957 * 359.79154 * 8 7 6 27 27 C 1.36605 * 120.09926 * 359.97438 * 26 8 7 28 28 H 1.08995 * 109.46899 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47174 * 299.99499 * 1 2 3 30 30 H 1.08995 * 109.47409 * 59.99479 * 1 2 3 31 31 H 1.08996 * 109.47752 * 119.99822 * 2 1 3 32 32 H 1.09002 * 109.47174 * 240.00501 * 2 1 3 33 33 H 1.07999 * 120.05077 * 0.02562 * 6 5 3 34 34 H 1.07995 * 119.95414 * 180.20868 * 7 6 5 35 35 H 0.97001 * 120.00094 * 33.47059 * 9 8 7 36 36 H 0.97004 * 120.00405 * 0.02562 * 14 12 10 37 37 H 1.09001 * 109.47060 * 65.35599 * 17 15 14 38 38 H 1.09002 * 109.47348 * 185.35800 * 17 15 14 39 39 H 1.09000 * 109.47117 * 305.35649 * 17 15 14 40 40 H 0.97000 * 120.00143 * 179.97438 * 21 20 18 41 41 H 1.08002 * 119.95223 * 179.97438 * 26 8 7 42 42 H 1.08002 * 120.04733 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2440 2.3428 0.0005 5 6 3.4762 1.6893 -0.0006 6 6 4.3880 0.6263 0.0047 7 6 5.7303 0.8804 0.0003 8 6 6.1922 2.1942 -0.0002 9 7 7.5603 2.4485 0.0003 10 6 8.0447 3.5292 0.6436 11 8 7.3011 4.2282 1.3003 12 6 9.4966 3.8667 0.5482 13 8 10.2402 3.1675 -0.1082 14 7 9.9810 4.9471 1.1920 15 6 11.4051 5.2778 1.0989 16 1 11.7734 5.0219 0.1054 17 6 12.1828 4.4846 2.1510 18 6 11.5951 6.7532 1.3403 19 1 10.9666 7.2694 2.0508 20 6 12.5713 7.4440 0.6541 21 7 12.8140 8.7032 0.9457 22 14 13.5492 6.5913 -0.6898 23 1 12.8008 6.6666 -1.9702 24 1 14.8652 7.2615 -0.8455 25 1 13.7590 5.1679 -0.3220 26 6 5.2891 3.2541 -0.0005 27 6 3.9452 3.0090 -0.0009 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 4.0306 -0.3929 0.0088 34 1 6.4342 0.0614 0.0009 35 1 8.1654 1.8480 -0.4624 36 1 9.3868 5.5054 1.7176 37 1 12.1237 3.4208 1.9209 38 1 13.2261 4.8001 2.1461 39 1 11.7524 4.6679 3.1355 40 1 13.5010 9.1891 0.4632 41 1 5.6515 4.2715 -0.0005 42 1 3.2454 3.8316 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000627510816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:48 Heat of formation + Delta-G solvation = -107.135460 kcal Electronic energy + Delta-G solvation = -25235.900701 eV Core-core repulsion = 21373.076233 eV Total energy + Delta-G solvation = -3862.824468 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.26587 -41.05095 -40.13795 -38.98243 -37.10731 -36.02296 -34.42885 -33.88507 -32.16637 -31.81997 -31.21896 -27.41331 -27.14497 -25.57345 -24.23501 -23.25765 -22.35286 -21.40673 -20.61059 -20.28241 -18.97369 -18.58621 -17.96987 -17.32483 -17.25790 -16.92569 -16.52802 -16.38314 -15.95744 -15.60796 -15.28689 -15.03128 -14.94140 -14.57279 -14.49636 -14.37936 -14.28237 -13.89439 -13.70696 -13.33678 -13.10069 -13.05172 -12.92679 -12.79416 -12.62932 -12.45622 -12.24095 -11.97862 -11.87547 -11.59971 -11.30220 -10.90235 -10.80792 -10.62965 -10.13736 -10.09070 -9.35536 -8.41273 -6.50216 -0.58385 0.28908 0.37297 1.15953 1.32870 1.35450 1.42210 1.45067 2.05914 2.25823 2.56600 2.76697 2.98695 3.05872 3.38833 3.72844 3.86168 4.07614 4.23563 4.24928 4.33121 4.36060 4.38369 4.45776 4.69579 4.74739 4.80785 4.94621 4.99490 5.03199 5.05243 5.10309 5.12119 5.21028 5.23578 5.35318 5.39111 5.40240 5.51049 5.74819 5.84183 6.04920 6.45460 6.54991 6.58442 6.66732 6.92665 7.18495 8.73591 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.032911 B = 0.002245 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.572424 B =12470.019391 C =12814.383933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.164 4.164 3 C 0.395 3.605 4 O -0.502 6.502 5 C -0.201 4.201 6 C -0.031 4.031 7 C -0.145 4.145 8 C 0.166 3.834 9 N -0.633 5.633 10 C 0.516 3.484 11 O -0.515 6.515 12 C 0.499 3.501 13 O -0.551 6.551 14 N -0.670 5.670 15 C 0.231 3.769 16 H 0.046 0.954 17 C -0.143 4.143 18 C -0.535 4.535 19 H 0.052 0.948 20 C 0.031 3.969 21 N -0.928 5.928 22 Si 0.931 3.069 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.245 1.245 26 C -0.156 4.156 27 C -0.054 4.054 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.185 0.815 34 H 0.171 0.829 35 H 0.436 0.564 36 H 0.410 0.590 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.272 0.728 41 H 0.118 0.882 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.001 -24.025 -3.536 30.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.201 4.201 3 C 0.277 3.723 4 O -0.380 6.380 5 C -0.203 4.203 6 C -0.050 4.050 7 C -0.165 4.165 8 C 0.071 3.929 9 N -0.281 5.281 10 C 0.298 3.702 11 O -0.389 6.389 12 C 0.278 3.722 13 O -0.430 6.430 14 N -0.319 5.319 15 C 0.129 3.871 16 H 0.064 0.936 17 C -0.202 4.202 18 C -0.573 4.573 19 H 0.070 0.930 20 C -0.170 4.170 21 N -0.565 5.565 22 Si 0.755 3.245 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.169 1.169 26 C -0.176 4.176 27 C -0.073 4.073 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.202 0.798 34 H 0.188 0.812 35 H 0.277 0.723 36 H 0.246 0.754 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.197 -23.313 -3.556 29.788 hybrid contribution 0.724 0.996 -0.421 1.301 sum -17.473 -22.318 -3.977 28.622 Atomic orbital electron populations 1.21623 0.94461 1.02786 1.01608 1.22087 0.97657 0.93095 1.07236 1.23057 0.87292 0.92673 0.69321 1.90531 1.59246 1.49535 1.38706 1.20745 0.95912 0.94134 1.09509 1.21435 0.91060 1.00119 0.92351 1.21071 0.97585 0.94076 1.03751 1.18294 0.81987 0.95068 0.97594 1.43023 1.07073 1.26421 1.51544 1.20348 0.88799 0.81539 0.79504 1.90784 1.59484 1.49679 1.38943 1.20047 0.88063 0.82728 0.81327 1.90708 1.59550 1.50847 1.41942 1.46468 1.12118 1.25580 1.47751 1.19179 0.77253 0.94056 0.96648 0.93630 1.22131 1.00381 0.98234 0.99438 1.21138 1.18942 0.92505 1.24687 0.93006 1.25715 0.97597 0.95152 0.98551 1.69991 1.33388 1.10867 1.42293 0.85977 0.78508 0.80217 0.79812 1.19728 1.20275 1.16902 1.20852 0.93298 0.99311 1.04127 1.21038 0.94614 0.97374 0.94316 0.89656 0.93794 0.93672 0.85463 0.85264 0.79795 0.81192 0.72327 0.75383 0.93445 0.92368 0.92513 0.91856 0.86401 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.20 71.98 0.66 -0.84 16 2 C -0.16 -1.20 5.02 29.85 0.15 -1.05 16 3 C 0.40 6.71 7.11 27.95 0.20 6.91 16 4 O -0.50 -12.91 15.96 -3.09 -0.05 -12.96 16 5 C -0.20 -3.46 5.87 -20.14 -0.12 -3.57 16 6 C -0.03 -0.32 9.42 22.33 0.21 -0.11 16 7 C -0.15 -1.82 9.90 22.14 0.22 -1.61 16 8 C 0.17 3.46 6.27 38.47 0.24 3.70 16 9 N -0.63 -14.36 5.30 -304.78 -1.61 -15.97 16 10 C 0.52 15.70 7.61 87.24 0.66 16.36 16 11 O -0.51 -17.75 14.13 -3.27 -0.05 -17.80 16 12 C 0.50 17.80 7.85 87.24 0.68 18.49 16 13 O -0.55 -20.97 16.15 -3.27 -0.05 -21.02 16 14 N -0.67 -26.60 5.06 -447.52 -2.27 -28.86 16 15 C 0.23 10.43 2.24 44.24 0.10 10.53 16 16 H 0.05 2.16 4.67 -2.38 -0.01 2.15 16 17 C -0.14 -5.72 9.47 71.98 0.68 -5.04 16 18 C -0.53 -28.48 9.04 25.60 0.23 -28.24 16 19 H 0.05 3.01 8.06 -2.91 -0.02 2.98 16 20 C 0.03 1.70 5.47 84.66 0.46 2.16 16 21 N -0.93 -54.62 13.96 21.45 0.30 -54.32 16 22 Si 0.93 42.37 27.03 68.60 1.85 44.22 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.25 -10.52 6.77 99.48 0.67 -9.85 16 26 C -0.16 -3.92 8.58 22.13 0.19 -3.73 16 27 C -0.05 -1.26 9.54 22.33 0.21 -1.04 16 28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.04 0.59 8.10 -2.39 -0.02 0.57 16 30 H 0.04 0.59 8.10 -2.39 -0.02 0.57 16 31 H 0.13 0.29 8.08 -2.39 -0.02 0.27 16 32 H 0.13 0.24 8.09 -2.39 -0.02 0.22 16 33 H 0.18 0.12 7.03 -2.91 -0.02 0.10 16 34 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.44 7.87 8.29 -92.71 -0.77 7.10 16 36 H 0.41 15.84 8.06 -92.71 -0.75 15.09 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.12 3.49 6.40 -2.91 -0.02 3.47 16 42 H 0.12 3.04 7.64 -2.91 -0.02 3.02 16 Total: -1.00 -71.87 362.61 2.44 -69.42 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.47 Total: 24.37 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 4.79 Total: 12.91 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -3.58 Total: -99.16 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -0.15 Total: -51.78 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.85 Total: 44.22 kcal Total: -71.87 2.44 -69.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627510816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.712 kcal (2) G-P(sol) polarization free energy of solvation -71.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds