Wall clock time and date at job start Tue Mar 31 2020 12:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20759 * 120.00065 * 2 1 4 4 C 1.50705 * 119.99879 * 180.02562 * 2 1 3 5 5 H 1.08998 * 109.58322 * 17.47593 * 4 2 1 6 6 C 1.53196 * 109.58493 * 137.90717 * 4 2 1 7 7 C 1.53038 * 109.30986 * 174.42054 * 6 4 2 8 8 C 1.53043 * 109.54000 * 298.63388 * 7 6 4 9 9 C 1.52760 * 109.38222 * 61.24035 * 8 7 6 10 10 N 1.46926 * 109.01269 * 305.58892 * 9 8 7 11 11 S 1.65598 * 120.63333 * 233.58673 * 10 9 8 12 12 O 1.42097 * 106.40093 * 175.70635 * 11 10 9 13 13 O 1.42097 * 106.39897 * 42.78548 * 11 10 9 14 14 N 1.65596 * 107.21614 * 289.24594 * 11 10 9 15 15 C 1.46500 * 119.99997 * 89.99982 * 14 11 10 16 16 C 1.46503 * 120.00009 * 269.99903 * 14 11 10 17 17 H 1.08999 * 109.47003 * 0.02562 * 16 14 11 18 18 C 1.53003 * 109.46888 * 240.00033 * 16 14 11 19 19 C 1.50693 * 109.46945 * 120.00290 * 16 14 11 20 20 H 1.08002 * 120.00795 * 359.97438 * 19 16 14 21 21 C 1.37881 * 120.00008 * 179.97438 * 19 16 14 22 22 N 1.31515 * 119.99775 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 120.00371 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46835 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47228 * 119.99949 * 23 21 19 26 26 H 1.48503 * 109.47241 * 240.00220 * 23 21 19 27 27 H 1.09002 * 109.46688 * 239.99455 * 1 2 3 28 28 H 1.08997 * 109.47060 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46991 * 119.99813 * 1 2 3 30 30 H 1.08994 * 109.49669 * 294.36865 * 6 4 2 31 31 H 1.09000 * 109.49525 * 54.46922 * 6 4 2 32 32 H 1.09001 * 109.46183 * 58.65779 * 7 6 4 33 33 H 1.08997 * 109.46041 * 178.61123 * 7 6 4 34 34 H 1.09002 * 109.49824 * 181.31480 * 8 7 6 35 35 H 1.08997 * 109.49827 * 301.38128 * 8 7 6 36 36 H 1.08997 * 109.51181 * 185.70457 * 9 8 7 37 37 H 1.09002 * 109.43107 * 65.42652 * 9 8 7 38 38 H 1.08997 * 109.47016 * 89.99578 * 15 14 11 39 39 H 1.08998 * 109.47001 * 329.99963 * 15 14 11 40 40 H 1.09001 * 109.47186 * 209.99596 * 15 14 11 41 41 H 1.08999 * 109.47461 * 299.99919 * 18 16 14 42 42 H 1.09003 * 109.46989 * 60.00123 * 18 16 14 43 43 H 1.09004 * 109.47030 * 180.02562 * 18 16 14 44 44 H 0.96998 * 119.99917 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 1 1.5949 -2.1112 -0.3093 6 6 3.4448 -1.2140 -0.9681 7 6 4.2850 -2.4886 -0.8610 8 6 4.8328 -2.6226 0.5617 9 6 3.6687 -2.7264 1.5454 10 7 2.7724 -1.5789 1.3492 11 16 2.3528 -0.6084 2.6237 12 8 1.5719 0.4486 2.0830 13 8 3.5413 -0.3925 3.3719 14 7 1.3409 -1.4870 3.5964 15 6 1.8929 -2.3026 4.6810 16 6 -0.1064 -1.4488 3.3724 17 1 -0.3263 -0.7945 2.5288 18 6 -0.8026 -0.9163 4.6266 19 6 -0.6052 -2.8388 3.0729 20 1 0.0866 -3.6679 3.0510 21 6 -1.9450 -3.0524 2.8266 22 7 -2.7874 -2.0428 2.8527 23 14 -2.5633 -4.7753 2.4545 24 1 -1.4237 -5.7271 2.4830 25 1 -3.5662 -5.1725 3.4751 26 1 -3.1913 -4.7961 1.1090 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 3.0743 -1.1070 -1.9875 31 1 4.0588 -0.3508 -0.7111 32 1 3.6640 -3.3535 -1.0941 33 1 5.1146 -2.4370 -1.5662 34 1 5.4502 -3.5183 0.6310 35 1 5.4343 -1.7465 0.8040 36 1 4.0525 -2.7200 2.5656 37 1 3.1223 -3.6521 1.3643 38 1 1.9518 -1.7054 5.5909 39 1 2.8905 -2.6454 4.4062 40 1 1.2473 -3.1638 4.8528 41 1 -0.5827 -1.5709 5.4699 42 1 -0.4418 0.0891 4.8433 43 1 -1.8795 -0.8883 4.4601 44 1 -3.7299 -2.1931 2.6798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000632383870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:38 Heat of formation + Delta-G solvation = -101.114257 kcal Electronic energy + Delta-G solvation = -28095.022855 eV Core-core repulsion = 24367.903438 eV Total energy + Delta-G solvation = -3727.119418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.72908 -37.61582 -36.55169 -36.23827 -35.33190 -32.69879 -32.43643 -31.46618 -29.32725 -29.09415 -25.64504 -25.26306 -24.67070 -23.60499 -20.91219 -20.36998 -19.91659 -18.33130 -16.98202 -16.91483 -16.52974 -15.83684 -15.39216 -15.28074 -14.73127 -14.62070 -14.37168 -13.79035 -13.71997 -13.57661 -13.51862 -13.10213 -12.81699 -12.62946 -12.22283 -12.03537 -11.82866 -11.65063 -11.47723 -11.41600 -11.29868 -11.24785 -11.12747 -11.03895 -10.94519 -10.87134 -10.85052 -10.48932 -10.38054 -10.24553 -10.12360 -9.35266 -8.98643 -8.82343 -8.56507 -8.04987 -6.18484 -4.27153 1.04216 2.56108 3.17060 3.26382 3.27494 3.34817 3.93494 4.27724 4.29019 4.69416 4.76548 4.85796 5.08332 5.11902 5.13668 5.34637 5.43741 5.51456 5.62773 5.68198 5.72433 5.81123 5.91501 5.96192 6.07039 6.09376 6.10561 6.14747 6.20287 6.33450 6.36842 6.53764 6.67927 6.73052 6.82645 6.89734 7.07912 7.39819 7.54575 7.69665 7.96084 8.13736 8.16452 8.76264 9.39627 10.86151 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.006423 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.628031 B = 4358.043910 C = 4543.836030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.366 3.634 3 O -0.452 6.452 4 C 0.107 3.893 5 H 0.097 0.903 6 C -0.123 4.123 7 C -0.114 4.114 8 C -0.134 4.134 9 C 0.127 3.873 10 N -0.993 5.993 11 S 2.769 3.231 12 O -0.955 6.955 13 O -0.990 6.990 14 N -0.989 5.989 15 C 0.105 3.895 16 C 0.264 3.736 17 H 0.062 0.938 18 C -0.146 4.146 19 C -0.526 4.526 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.885 5.885 23 Si 0.894 3.106 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.283 1.283 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.032 0.968 42 H 0.012 0.988 43 H 0.094 0.906 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.358 -3.658 -5.288 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.241 3.759 3 O -0.326 6.326 4 C -0.001 4.001 5 H 0.115 0.885 6 C -0.162 4.162 7 C -0.151 4.151 8 C -0.173 4.173 9 C 0.002 3.998 10 N -0.833 5.833 11 S 2.780 3.220 12 O -0.938 6.938 13 O -0.974 6.974 14 N -0.831 5.831 15 C -0.042 4.042 16 C 0.161 3.839 17 H 0.080 0.920 18 C -0.205 4.205 19 C -0.565 4.565 20 H 0.082 0.918 21 C -0.137 4.137 22 N -0.523 5.523 23 Si 0.722 3.278 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.130 0.870 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.031 0.969 43 H 0.112 0.888 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.772 -2.150 -5.142 11.250 hybrid contribution -0.659 -1.569 -0.114 1.706 sum 9.113 -3.720 -5.256 11.159 Atomic orbital electron populations 1.22321 0.92721 1.04996 1.04617 1.24226 0.92757 0.88756 0.70126 1.90320 1.71615 1.34452 1.36251 1.21648 0.96150 0.98645 0.83657 0.88457 1.21824 0.96627 0.99276 0.98481 1.21444 0.99330 0.97714 0.96635 1.21815 0.97664 1.02501 0.95275 1.21261 0.90269 0.88685 0.99630 1.58212 1.60672 1.44649 1.19768 1.02368 0.73155 0.73871 0.72570 1.93572 1.71087 1.52826 1.76358 1.93535 1.48113 1.84823 1.70914 1.57780 1.19379 1.63175 1.42802 1.21232 0.97190 0.96193 0.89551 1.18880 0.72175 0.97433 0.95375 0.92022 1.22064 1.04287 0.96262 0.97916 1.21397 0.93127 0.93437 1.48584 0.91812 1.24906 0.96697 0.96998 0.95084 1.69880 1.03592 1.30143 1.48678 0.86507 0.78869 0.84384 0.78009 1.19819 1.21010 1.20930 0.87039 0.90180 0.90612 0.90781 0.90642 0.91505 0.91688 0.90835 0.91382 0.90036 0.90911 0.93769 0.93351 0.89944 0.94836 0.96876 0.88799 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.37 9.42 36.01 0.34 -3.03 16 2 C 0.37 6.72 3.59 -29.03 -0.10 6.62 16 3 O -0.45 -9.57 15.43 -18.55 -0.29 -9.85 16 4 C 0.11 1.65 3.28 -68.74 -0.23 1.42 16 5 H 0.10 1.34 8.06 -51.93 -0.42 0.93 16 6 C -0.12 -1.58 5.20 -26.61 -0.14 -1.72 16 7 C -0.11 -1.19 5.89 -26.69 -0.16 -1.35 16 8 C -0.13 -1.50 6.06 -26.83 -0.16 -1.66 16 9 C 0.13 1.70 6.41 -3.93 -0.03 1.67 16 10 N -0.99 -16.48 3.35 -107.94 -0.36 -16.84 16 11 S 2.77 55.76 5.83 -107.50 -0.63 55.13 16 12 O -0.95 -21.47 10.15 -67.17 -0.68 -22.15 16 13 O -0.99 -21.34 16.50 -57.17 -0.94 -22.28 16 14 N -0.99 -19.92 3.12 -115.85 -0.36 -20.28 16 15 C 0.10 1.82 9.28 59.85 0.56 2.37 16 16 C 0.26 6.03 2.62 -69.08 -0.18 5.85 16 17 H 0.06 1.51 4.22 -51.93 -0.22 1.29 16 18 C -0.15 -3.34 8.97 37.16 0.33 -3.01 16 19 C -0.53 -12.51 7.99 -34.44 -0.28 -12.79 16 20 H 0.06 1.49 7.33 -52.49 -0.38 1.10 16 21 C 0.07 1.62 5.30 -17.82 -0.09 1.53 16 22 N -0.88 -22.68 11.32 55.43 0.63 -22.05 16 23 Si 0.89 19.22 29.54 -169.99 -5.02 14.20 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H 0.11 2.27 5.14 -51.93 -0.27 2.00 16 28 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.10 7.72 -51.93 -0.40 0.69 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.08 6.63 -51.93 -0.34 0.73 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.72 6.95 -51.93 -0.36 0.36 16 40 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 41 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 44 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -30.11 347.11 -9.39 -39.50 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.83 Total: 3.49 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -0.14 Total: -4.10 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.10 Total: -59.17 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -1.91 Total: -54.28 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Atomic # 16 Polarization: 55.76 SS G_CDS: -0.63 Total: 55.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.11 -9.39 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000632383870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.610 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds