Wall clock time and date at job start Tue Mar 31 2020 12:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20759 * 120.00065 * 2 1 4 4 C 1.50705 * 119.99879 * 180.02562 * 2 1 3 5 5 H 1.08998 * 109.58322 * 17.47593 * 4 2 1 6 6 C 1.53196 * 109.58493 * 137.90717 * 4 2 1 7 7 C 1.53038 * 109.30986 * 174.42054 * 6 4 2 8 8 C 1.53043 * 109.54000 * 298.63388 * 7 6 4 9 9 C 1.52760 * 109.38222 * 61.24035 * 8 7 6 10 10 N 1.46926 * 109.01269 * 305.58892 * 9 8 7 11 11 S 1.65598 * 120.63333 * 233.58673 * 10 9 8 12 12 O 1.42097 * 106.40093 * 175.70635 * 11 10 9 13 13 O 1.42097 * 106.39897 * 42.78548 * 11 10 9 14 14 N 1.65596 * 107.21614 * 289.24594 * 11 10 9 15 15 C 1.46500 * 119.99997 * 89.99982 * 14 11 10 16 16 C 1.46503 * 120.00009 * 269.99903 * 14 11 10 17 17 H 1.08999 * 109.47003 * 0.02562 * 16 14 11 18 18 C 1.53003 * 109.46888 * 240.00033 * 16 14 11 19 19 C 1.50693 * 109.46945 * 120.00290 * 16 14 11 20 20 H 1.08002 * 120.00795 * 359.97438 * 19 16 14 21 21 C 1.37881 * 120.00008 * 179.97438 * 19 16 14 22 22 N 1.31515 * 119.99775 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 120.00371 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46835 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47228 * 119.99949 * 23 21 19 26 26 H 1.48503 * 109.47241 * 240.00220 * 23 21 19 27 27 H 1.09002 * 109.46688 * 239.99455 * 1 2 3 28 28 H 1.08997 * 109.47060 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46991 * 119.99813 * 1 2 3 30 30 H 1.08994 * 109.49669 * 294.36865 * 6 4 2 31 31 H 1.09000 * 109.49525 * 54.46922 * 6 4 2 32 32 H 1.09001 * 109.46183 * 58.65779 * 7 6 4 33 33 H 1.08997 * 109.46041 * 178.61123 * 7 6 4 34 34 H 1.09002 * 109.49824 * 181.31480 * 8 7 6 35 35 H 1.08997 * 109.49827 * 301.38128 * 8 7 6 36 36 H 1.08997 * 109.51181 * 185.70457 * 9 8 7 37 37 H 1.09002 * 109.43107 * 65.42652 * 9 8 7 38 38 H 1.08997 * 109.47016 * 89.99578 * 15 14 11 39 39 H 1.08998 * 109.47001 * 329.99963 * 15 14 11 40 40 H 1.09001 * 109.47186 * 209.99596 * 15 14 11 41 41 H 1.08999 * 109.47461 * 299.99919 * 18 16 14 42 42 H 1.09003 * 109.46989 * 60.00123 * 18 16 14 43 43 H 1.09004 * 109.47030 * 180.02562 * 18 16 14 44 44 H 0.96998 * 119.99917 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 1 1.5949 -2.1112 -0.3093 6 6 3.4448 -1.2140 -0.9681 7 6 4.2850 -2.4886 -0.8610 8 6 4.8328 -2.6226 0.5617 9 6 3.6687 -2.7264 1.5454 10 7 2.7724 -1.5789 1.3492 11 16 2.3528 -0.6084 2.6237 12 8 1.5719 0.4486 2.0830 13 8 3.5413 -0.3925 3.3719 14 7 1.3409 -1.4870 3.5964 15 6 1.8929 -2.3026 4.6810 16 6 -0.1064 -1.4488 3.3724 17 1 -0.3263 -0.7945 2.5288 18 6 -0.8026 -0.9163 4.6266 19 6 -0.6052 -2.8388 3.0729 20 1 0.0866 -3.6679 3.0510 21 6 -1.9450 -3.0524 2.8266 22 7 -2.7874 -2.0428 2.8527 23 14 -2.5633 -4.7753 2.4545 24 1 -1.4237 -5.7271 2.4830 25 1 -3.5662 -5.1725 3.4751 26 1 -3.1913 -4.7961 1.1090 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 3.0743 -1.1070 -1.9875 31 1 4.0588 -0.3508 -0.7111 32 1 3.6640 -3.3535 -1.0941 33 1 5.1146 -2.4370 -1.5662 34 1 5.4502 -3.5183 0.6310 35 1 5.4343 -1.7465 0.8040 36 1 4.0525 -2.7200 2.5656 37 1 3.1223 -3.6521 1.3643 38 1 1.9518 -1.7054 5.5909 39 1 2.8905 -2.6454 4.4062 40 1 1.2473 -3.1638 4.8528 41 1 -0.5827 -1.5709 5.4699 42 1 -0.4418 0.0891 4.8433 43 1 -1.8795 -0.8883 4.4601 44 1 -3.7299 -2.1931 2.6798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000632383870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:37 Heat of formation + Delta-G solvation = -119.766538 kcal Electronic energy + Delta-G solvation = -28095.831679 eV Core-core repulsion = 24367.903438 eV Total energy + Delta-G solvation = -3727.928241 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.08473 -38.92072 -38.12960 -37.89358 -36.98771 -34.48528 -33.52480 -32.64796 -30.93869 -30.58004 -27.25739 -27.04033 -25.81731 -24.66001 -22.64448 -21.57690 -21.13277 -19.83933 -18.57669 -18.40275 -18.24203 -17.29887 -16.92725 -16.63108 -16.35716 -15.89354 -15.55287 -15.23019 -15.01962 -14.89199 -14.87827 -14.47652 -14.41367 -13.80488 -13.77013 -13.69480 -13.23656 -13.13633 -13.08531 -12.97407 -12.89528 -12.76939 -12.69731 -12.52903 -12.31370 -12.13712 -12.03919 -11.99979 -11.89239 -11.72653 -11.42065 -11.09832 -10.44769 -10.39659 -10.04962 -9.67223 -8.03935 -6.17855 -0.49540 1.13164 1.48668 1.53594 1.61684 1.89492 2.41679 2.50772 2.96058 3.23175 3.25518 3.68621 3.87589 4.05127 4.11845 4.14449 4.31060 4.36146 4.37412 4.56375 4.63742 4.69289 4.72484 4.76540 4.82164 4.91473 4.93979 4.97912 5.01148 5.14682 5.15598 5.19710 5.22915 5.24576 5.41057 5.48386 5.51241 5.65359 5.76006 5.89275 6.11718 6.32005 6.71954 6.90636 7.51549 9.00462 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.006423 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.628031 B = 4358.043910 C = 4543.836030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.364 3.636 3 O -0.488 6.488 4 C 0.104 3.896 5 H 0.120 0.880 6 C -0.122 4.122 7 C -0.108 4.108 8 C -0.132 4.132 9 C 0.115 3.885 10 N -0.991 5.991 11 S 2.774 3.226 12 O -0.985 6.985 13 O -1.009 7.009 14 N -0.993 5.993 15 C 0.097 3.903 16 C 0.267 3.733 17 H 0.044 0.956 18 C -0.141 4.141 19 C -0.524 4.524 20 H 0.071 0.929 21 C 0.024 3.976 22 N -0.914 5.914 23 Si 0.953 3.047 24 H -0.263 1.263 25 H -0.291 1.291 26 H -0.283 1.283 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.041 0.959 42 H 0.012 0.988 43 H 0.073 0.927 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.603 -6.399 -6.487 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.241 3.759 3 O -0.364 6.364 4 C -0.002 4.002 5 H 0.138 0.862 6 C -0.161 4.161 7 C -0.146 4.146 8 C -0.171 4.171 9 C -0.009 4.009 10 N -0.834 5.834 11 S 2.786 3.214 12 O -0.969 6.969 13 O -0.993 6.993 14 N -0.835 5.835 15 C -0.048 4.048 16 C 0.164 3.836 17 H 0.061 0.939 18 C -0.201 4.201 19 C -0.563 4.563 20 H 0.089 0.911 21 C -0.177 4.177 22 N -0.553 5.553 23 Si 0.780 3.220 24 H -0.187 1.187 25 H -0.217 1.217 26 H -0.209 1.209 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.031 0.969 43 H 0.091 0.909 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.038 -4.908 -6.323 13.635 hybrid contribution -1.025 -0.683 0.264 1.260 sum 10.014 -5.591 -6.059 12.971 Atomic orbital electron populations 1.22306 0.93001 1.04375 1.05014 1.24643 0.93015 0.89601 0.68633 1.90301 1.72220 1.36021 1.37854 1.21813 0.97484 0.97325 0.83627 0.86190 1.21875 0.95598 0.99965 0.98628 1.21466 0.99828 0.96710 0.96577 1.21848 0.96857 1.03291 0.95081 1.21632 0.90760 0.87975 1.00503 1.57982 1.61122 1.45269 1.19056 1.01984 0.72642 0.73855 0.72890 1.93533 1.71715 1.54756 1.76912 1.93504 1.48578 1.85312 1.71890 1.57664 1.18227 1.63626 1.43974 1.21434 0.98400 0.95941 0.89041 1.18652 0.73626 0.96901 0.94469 0.93859 1.21980 1.03009 0.96541 0.98547 1.21575 0.93205 0.93756 1.47757 0.91122 1.25571 0.96998 0.99912 0.95182 1.70007 1.03697 1.31870 1.49754 0.85586 0.78309 0.80803 0.77342 1.18652 1.21710 1.20945 0.89430 0.91455 0.87124 0.88693 0.92912 0.89735 0.89553 0.87669 0.93044 0.90167 0.88908 0.93443 0.90872 0.89766 0.94011 0.96881 0.90880 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.83 9.42 71.24 0.67 -6.15 16 2 C 0.36 13.34 3.59 29.10 0.10 13.44 16 3 O -0.49 -21.10 15.43 22.03 0.34 -20.76 16 4 C 0.10 3.05 3.28 44.23 0.15 3.20 16 5 H 0.12 2.96 8.06 -2.39 -0.02 2.94 16 6 C -0.12 -2.84 5.20 30.67 0.16 -2.68 16 7 C -0.11 -1.84 5.89 30.62 0.18 -1.66 16 8 C -0.13 -2.50 6.06 30.53 0.19 -2.32 16 9 C 0.12 2.75 6.41 86.22 0.55 3.30 16 10 N -0.99 -31.45 3.35 -495.40 -1.66 -33.11 16 11 S 2.77 111.67 5.83 -56.49 -0.33 111.34 16 12 O -0.99 -45.59 10.15 -118.44 -1.20 -46.79 16 13 O -1.01 -43.38 16.50 -128.00 -2.11 -45.49 16 14 N -0.99 -39.56 3.12 -520.45 -1.62 -41.18 16 15 C 0.10 3.25 9.28 127.77 1.19 4.43 16 16 C 0.27 12.27 2.62 44.24 0.12 12.39 16 17 H 0.04 2.19 4.22 -2.39 -0.01 2.18 16 18 C -0.14 -6.57 8.97 71.98 0.65 -5.93 16 19 C -0.52 -24.42 7.99 25.60 0.20 -24.21 16 20 H 0.07 3.15 7.33 -2.91 -0.02 3.13 16 21 C 0.02 1.13 5.30 84.66 0.45 1.58 16 22 N -0.91 -47.25 11.32 21.45 0.24 -47.01 16 23 Si 0.95 38.49 29.54 68.60 2.03 40.51 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 25 H -0.29 -11.98 7.11 99.48 0.71 -11.28 16 26 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 27 H 0.09 3.66 5.14 -2.39 -0.01 3.65 16 28 H 0.07 2.52 8.12 -2.39 -0.02 2.50 16 29 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.48 7.72 -2.39 -0.02 1.46 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.92 6.63 -2.39 -0.02 1.91 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 2.05 6.95 -2.39 -0.02 2.03 16 40 H 0.08 2.77 7.02 -2.39 -0.02 2.75 16 41 H 0.04 1.81 7.67 -2.39 -0.02 1.79 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 44 H 0.26 13.05 8.31 -92.71 -0.77 12.28 16 Total: -1.00 -65.81 347.11 1.28 -64.54 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.99 Total: 22.54 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 4.60 Total: -4.60 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -3.04 Total: -121.29 kcal Atomic # 8 Polarization: -110.07 SS G_CDS: -2.97 Total: -113.04 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.51 kcal Atomic # 16 Polarization: 111.67 SS G_CDS: -0.33 Total: 111.34 kcal Total: -65.81 1.28 -64.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000632383870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.229 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds