Wall clock time and date at job start Tue Mar 31 2020 13:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47302 * 2 1 4 4 C 1.46495 * 120.00255 * 273.24970 * 3 2 1 5 5 C 1.50698 * 109.47176 * 277.74008 * 4 3 2 6 6 H 1.07992 * 120.00133 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00187 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00131 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99845 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47344 * 90.00073 * 9 7 5 11 11 H 1.48501 * 109.46699 * 210.00418 * 9 7 5 12 12 H 1.48502 * 109.46920 * 329.99601 * 9 7 5 13 13 S 1.65605 * 119.99922 * 93.24399 * 3 2 1 14 14 O 1.42100 * 106.40043 * 161.52525 * 13 3 2 15 15 O 1.42104 * 106.39798 * 28.60506 * 13 3 2 16 16 N 1.65597 * 107.21830 * 275.06693 * 13 3 2 17 17 C 1.46925 * 120.63133 * 286.32916 * 16 13 3 18 18 C 1.53194 * 108.89487 * 233.68358 * 17 16 13 19 19 C 1.53036 * 109.31267 * 305.29658 * 18 17 16 20 20 C 1.53039 * 109.54288 * 61.36209 * 19 18 17 21 21 C 1.47211 * 120.81503 * 106.47900 * 16 13 3 22 22 H 1.08992 * 109.67560 * 246.22267 * 21 16 13 23 23 C 1.50705 * 109.53210 * 6.52781 * 21 16 13 24 24 C 1.50695 * 120.00048 * 261.67749 * 23 21 16 25 25 O 1.20765 * 119.99573 * 81.68071 * 23 21 16 26 26 H 1.08990 * 109.47238 * 64.93620 * 1 2 3 27 27 H 1.08999 * 109.46847 * 184.93815 * 1 2 3 28 28 H 1.09003 * 109.46918 * 304.93231 * 1 2 3 29 29 H 1.09003 * 109.47144 * 240.00364 * 2 1 3 30 30 H 1.09006 * 109.47410 * 120.00275 * 2 1 3 31 31 H 1.09002 * 109.46748 * 37.73659 * 4 3 2 32 32 H 1.08997 * 109.47031 * 157.73342 * 4 3 2 33 33 H 0.97005 * 119.99963 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.58670 * 113.82545 * 17 16 13 35 35 H 1.09002 * 109.58497 * 353.54052 * 17 16 13 36 36 H 1.08997 * 109.49262 * 65.24489 * 18 17 16 37 37 H 1.08998 * 109.49705 * 185.31023 * 18 17 16 38 38 H 1.08997 * 109.46222 * 181.38962 * 19 18 17 39 39 H 1.09006 * 109.46126 * 301.34350 * 19 18 17 40 40 H 1.08998 * 109.49473 * 58.58420 * 20 19 18 41 41 H 1.08992 * 109.50238 * 178.68422 * 20 19 18 42 42 H 1.09003 * 109.47265 * 60.00331 * 24 23 21 43 43 H 1.08998 * 109.47028 * 179.97438 * 24 23 21 44 44 H 1.09002 * 109.47256 * 300.00008 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1948 2.0958 -1.2666 5 6 3.5201 1.7179 -1.8763 6 1 4.1666 1.0159 -1.3706 7 6 3.9079 2.2690 -3.0791 8 7 5.0647 1.9396 -3.6109 9 14 2.7900 3.4838 -3.9535 10 1 3.1084 4.8624 -3.5029 11 1 2.9991 3.3816 -5.4201 12 1 1.3739 3.1727 -3.6326 13 16 2.3710 2.1348 1.4319 14 8 3.2018 3.2415 1.1089 15 8 2.7571 1.1116 2.3393 16 7 0.9556 2.7669 2.0146 17 6 0.3583 3.9591 1.3979 18 6 0.1156 5.0111 2.4847 19 6 -0.7276 4.3969 3.6044 20 6 0.0288 3.2224 4.2294 21 6 0.2704 2.1501 3.1623 22 1 -0.6840 1.7341 2.8396 23 6 1.1320 1.0537 3.7338 24 6 0.8718 -0.3823 3.3582 25 8 2.0310 1.3260 4.4929 26 1 -0.3633 0.4353 -0.9308 27 1 -0.3633 -1.0239 0.0885 28 1 -0.3633 0.5885 0.8425 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.3901 1.8265 -1.9508 32 1 2.1720 3.1701 -1.0839 33 1 5.3376 2.3276 -4.4570 34 1 -0.5892 3.6924 0.9295 35 1 1.0374 4.3606 0.6458 36 1 1.0717 5.3431 2.8895 37 1 -0.4130 5.8623 2.0556 38 1 -0.9225 5.1505 4.3674 39 1 -1.6734 4.0427 3.1943 40 1 0.9856 3.5712 4.6177 41 1 -0.5621 2.8002 5.0421 42 1 0.9764 -0.5005 2.2797 43 1 1.5902 -1.0264 3.8652 44 1 -0.1392 -0.6587 3.6577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000632383898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:56 Heat of formation + Delta-G solvation = -99.302080 kcal Electronic energy + Delta-G solvation = -27845.324146 eV Core-core repulsion = 24118.283310 eV Total energy + Delta-G solvation = -3727.040836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.99450 -37.76331 -36.68906 -36.32521 -35.35785 -32.76016 -32.55131 -31.67401 -30.48626 -29.54489 -27.21985 -24.92524 -23.78349 -23.02842 -21.66163 -20.56885 -20.19897 -18.41525 -17.30799 -17.06861 -16.75047 -16.20946 -15.68458 -15.45501 -14.94789 -14.79706 -14.30904 -14.12502 -14.00308 -13.93246 -13.65009 -13.40892 -12.96048 -12.79807 -12.69052 -12.26653 -12.16021 -12.06589 -11.84942 -11.75016 -11.45640 -11.38813 -11.27996 -11.22066 -11.13610 -11.02573 -10.97652 -10.62268 -10.50931 -10.40535 -10.24955 -9.61027 -9.31294 -9.06119 -8.64027 -8.23368 -6.12891 -4.13058 0.88385 2.25005 3.20698 3.25075 3.27793 3.31848 3.75253 4.01637 4.33724 4.56769 4.60700 4.72010 4.91929 4.97228 5.11302 5.15643 5.21083 5.24095 5.26892 5.44580 5.49494 5.50954 5.52078 5.55699 5.59345 5.64145 5.76960 5.81748 5.89210 5.98728 6.06557 6.12810 6.20704 6.23862 6.36298 6.47254 6.54326 6.69278 7.00585 7.30251 7.52521 7.81929 8.43539 8.91469 9.45687 11.00512 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.005789 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.208743 B = 4835.746562 C = 5459.482561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 N -0.982 5.982 4 C 0.226 3.774 5 C -0.535 4.535 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.893 5.893 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.264 1.264 13 S 2.768 3.232 14 O -0.955 6.955 15 O -0.965 6.965 16 N -1.000 6.000 17 C 0.123 3.877 18 C -0.134 4.134 19 C -0.113 4.113 20 C -0.123 4.123 21 C 0.106 3.894 22 H 0.093 0.907 23 C 0.359 3.641 24 C -0.193 4.193 25 O -0.439 6.439 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.519 0.120 11.814 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.015 4.015 3 N -0.823 5.823 4 C 0.103 3.897 5 C -0.574 4.574 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.697 3.303 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.189 1.189 13 S 2.779 3.221 14 O -0.938 6.938 15 O -0.949 6.949 16 N -0.841 5.841 17 C -0.002 4.002 18 C -0.173 4.173 19 C -0.151 4.151 20 C -0.162 4.162 21 C -0.002 4.002 22 H 0.110 0.890 23 C 0.232 3.768 24 C -0.250 4.250 25 O -0.311 6.311 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.027 0.358 12.443 20.293 hybrid contribution -0.863 0.646 -1.010 1.477 sum -16.889 1.003 11.433 20.420 Atomic orbital electron populations 1.22343 0.97040 1.01688 1.02400 1.21332 0.93019 0.82984 1.04182 1.57533 1.81046 1.21583 1.22171 1.19464 0.98200 0.91314 0.80733 1.21351 1.02212 1.27861 1.05977 0.90410 1.24870 0.94985 0.96084 0.96942 1.69892 1.20446 1.43714 1.19072 0.86940 0.81548 0.82478 0.79312 1.19716 1.20877 1.18880 1.02514 0.73156 0.73792 0.72686 1.93622 1.63166 1.53146 1.83909 1.93522 1.79688 1.58998 1.62687 1.58584 1.44591 1.39607 1.41282 1.21405 0.99304 0.84305 0.95214 1.21887 1.01103 0.97813 0.96522 1.21446 0.98379 0.97265 0.97976 1.21816 1.02082 0.95600 0.96733 1.21676 0.97154 0.93864 0.87489 0.88956 1.24150 0.81432 0.91902 0.79288 1.22406 1.02870 0.94883 1.04850 1.90365 1.24943 1.85339 1.30481 0.91859 0.91767 0.93033 0.88933 0.90276 0.94793 0.95218 0.92443 0.91167 0.89219 0.91082 0.90652 0.91530 0.91695 0.90357 0.90799 0.88739 0.89609 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.35 37.16 0.35 -1.69 16 2 C 0.11 1.74 5.98 -4.04 -0.02 1.71 16 3 N -0.98 -19.04 2.83 -115.66 -0.33 -19.37 16 4 C 0.23 5.14 4.23 -5.20 -0.02 5.12 16 5 C -0.53 -14.98 9.91 -34.44 -0.34 -15.32 16 6 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.89 -27.21 13.96 55.43 0.77 -26.44 16 9 Si 0.87 20.64 27.47 -169.99 -4.67 15.97 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 13 S 2.77 54.53 5.90 -107.50 -0.63 53.90 16 14 O -0.96 -23.04 16.05 -57.17 -0.92 -23.96 16 15 O -0.97 -19.69 10.25 -67.04 -0.69 -20.38 16 16 N -1.00 -14.61 3.36 -107.50 -0.36 -14.97 16 17 C 0.12 1.54 6.43 -3.71 -0.02 1.51 16 18 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 19 C -0.11 -1.00 5.88 -26.69 -0.16 -1.16 16 20 C -0.12 -1.33 5.16 -26.61 -0.14 -1.47 16 21 C 0.11 1.28 3.14 -68.59 -0.22 1.06 16 22 H 0.09 0.81 7.80 -51.93 -0.41 0.41 16 23 C 0.36 5.25 3.64 -29.04 -0.11 5.15 16 24 C -0.19 -2.27 9.37 36.00 0.34 -1.94 16 25 O -0.44 -8.16 15.53 -18.22 -0.28 -8.44 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.53 7.51 -51.93 -0.39 0.14 16 29 H 0.09 1.54 8.10 -51.93 -0.42 1.12 16 30 H 0.08 1.17 4.92 -51.93 -0.26 0.92 16 31 H 0.03 0.72 7.19 -51.93 -0.37 0.35 16 32 H 0.03 0.68 6.75 -51.93 -0.35 0.33 16 33 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.28 7.33 -51.93 -0.38 0.90 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 1.02 7.69 -51.93 -0.40 0.63 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.12 3.48 -51.93 -0.18 0.94 16 43 H 0.08 1.08 8.12 -51.93 -0.42 0.65 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 349.26 15.07 5.26 5.26 Total: -1.00 -35.61 349.26 -9.41 -45.02 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.97 Total: -0.03 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.60 Total: -6.57 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.09 Total: -60.77 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -1.89 Total: -52.78 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 16 Polarization: 54.53 SS G_CDS: -0.63 Total: 53.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.61 -9.41 -45.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000632383898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.282 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds