Wall clock time and date at job start Tue Mar 31 2020 13:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47302 * 2 1 4 4 C 1.46495 * 120.00255 * 273.24970 * 3 2 1 5 5 C 1.50698 * 109.47176 * 277.74008 * 4 3 2 6 6 H 1.07992 * 120.00133 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00187 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00131 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99845 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47344 * 90.00073 * 9 7 5 11 11 H 1.48501 * 109.46699 * 210.00418 * 9 7 5 12 12 H 1.48502 * 109.46920 * 329.99601 * 9 7 5 13 13 S 1.65605 * 119.99922 * 93.24399 * 3 2 1 14 14 O 1.42100 * 106.40043 * 161.52525 * 13 3 2 15 15 O 1.42104 * 106.39798 * 28.60506 * 13 3 2 16 16 N 1.65597 * 107.21830 * 275.06693 * 13 3 2 17 17 C 1.46925 * 120.63133 * 286.32916 * 16 13 3 18 18 C 1.53194 * 108.89487 * 233.68358 * 17 16 13 19 19 C 1.53036 * 109.31267 * 305.29658 * 18 17 16 20 20 C 1.53039 * 109.54288 * 61.36209 * 19 18 17 21 21 C 1.47211 * 120.81503 * 106.47900 * 16 13 3 22 22 H 1.08992 * 109.67560 * 246.22267 * 21 16 13 23 23 C 1.50705 * 109.53210 * 6.52781 * 21 16 13 24 24 C 1.50695 * 120.00048 * 261.67749 * 23 21 16 25 25 O 1.20765 * 119.99573 * 81.68071 * 23 21 16 26 26 H 1.08990 * 109.47238 * 64.93620 * 1 2 3 27 27 H 1.08999 * 109.46847 * 184.93815 * 1 2 3 28 28 H 1.09003 * 109.46918 * 304.93231 * 1 2 3 29 29 H 1.09003 * 109.47144 * 240.00364 * 2 1 3 30 30 H 1.09006 * 109.47410 * 120.00275 * 2 1 3 31 31 H 1.09002 * 109.46748 * 37.73659 * 4 3 2 32 32 H 1.08997 * 109.47031 * 157.73342 * 4 3 2 33 33 H 0.97005 * 119.99963 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.58670 * 113.82545 * 17 16 13 35 35 H 1.09002 * 109.58497 * 353.54052 * 17 16 13 36 36 H 1.08997 * 109.49262 * 65.24489 * 18 17 16 37 37 H 1.08998 * 109.49705 * 185.31023 * 18 17 16 38 38 H 1.08997 * 109.46222 * 181.38962 * 19 18 17 39 39 H 1.09006 * 109.46126 * 301.34350 * 19 18 17 40 40 H 1.08998 * 109.49473 * 58.58420 * 20 19 18 41 41 H 1.08992 * 109.50238 * 178.68422 * 20 19 18 42 42 H 1.09003 * 109.47265 * 60.00331 * 24 23 21 43 43 H 1.08998 * 109.47028 * 179.97438 * 24 23 21 44 44 H 1.09002 * 109.47256 * 300.00008 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1948 2.0958 -1.2666 5 6 3.5201 1.7179 -1.8763 6 1 4.1666 1.0159 -1.3706 7 6 3.9079 2.2690 -3.0791 8 7 5.0647 1.9396 -3.6109 9 14 2.7900 3.4838 -3.9535 10 1 3.1084 4.8624 -3.5029 11 1 2.9991 3.3816 -5.4201 12 1 1.3739 3.1727 -3.6326 13 16 2.3710 2.1348 1.4319 14 8 3.2018 3.2415 1.1089 15 8 2.7571 1.1116 2.3393 16 7 0.9556 2.7669 2.0146 17 6 0.3583 3.9591 1.3979 18 6 0.1156 5.0111 2.4847 19 6 -0.7276 4.3969 3.6044 20 6 0.0288 3.2224 4.2294 21 6 0.2704 2.1501 3.1623 22 1 -0.6840 1.7341 2.8396 23 6 1.1320 1.0537 3.7338 24 6 0.8718 -0.3823 3.3582 25 8 2.0310 1.3260 4.4929 26 1 -0.3633 0.4353 -0.9308 27 1 -0.3633 -1.0239 0.0885 28 1 -0.3633 0.5885 0.8425 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.3901 1.8265 -1.9508 32 1 2.1720 3.1701 -1.0839 33 1 5.3376 2.3276 -4.4570 34 1 -0.5892 3.6924 0.9295 35 1 1.0374 4.3606 0.6458 36 1 1.0717 5.3431 2.8895 37 1 -0.4130 5.8623 2.0556 38 1 -0.9225 5.1505 4.3674 39 1 -1.6734 4.0427 3.1943 40 1 0.9856 3.5712 4.6177 41 1 -0.5621 2.8002 5.0421 42 1 0.9764 -0.5005 2.2797 43 1 1.5902 -1.0264 3.8652 44 1 -0.1392 -0.6587 3.6577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000632383898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:56 Heat of formation + Delta-G solvation = -125.373243 kcal Electronic energy + Delta-G solvation = -27846.454676 eV Core-core repulsion = 24118.283310 eV Total energy + Delta-G solvation = -3728.171366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.10425 -38.92991 -38.15725 -37.83532 -37.00791 -34.73330 -33.58108 -32.68691 -31.87671 -30.53785 -28.96196 -25.87670 -24.73457 -24.57100 -23.21413 -21.61993 -21.15602 -19.82659 -19.12437 -18.53857 -18.34923 -17.50737 -16.92273 -16.65896 -16.28287 -16.00606 -15.81139 -15.43106 -15.11879 -14.89551 -14.73989 -14.64448 -14.48039 -14.21173 -13.87554 -13.76444 -13.55214 -13.26432 -13.12504 -13.01337 -12.89372 -12.82907 -12.60472 -12.46993 -12.32989 -12.18865 -12.07595 -12.01701 -11.74331 -11.72844 -11.62071 -11.42504 -10.80841 -10.40920 -10.10578 -9.82254 -8.31568 -6.38413 -0.60237 1.13340 1.34841 1.40135 1.48048 1.91285 2.33868 2.38289 2.94172 3.02535 3.17187 3.66398 3.85893 3.89996 4.09041 4.12054 4.26179 4.31556 4.35577 4.42182 4.44471 4.56592 4.66216 4.68758 4.75210 4.76088 4.86072 4.90457 4.92945 5.03300 5.08169 5.16428 5.20827 5.22801 5.31269 5.41306 5.45493 5.48023 5.50559 5.54534 5.81581 6.27118 6.64871 6.74608 7.25092 8.86073 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.005789 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.208743 B = 4835.746562 C = 5459.482561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.100 3.900 3 N -0.987 5.987 4 C 0.236 3.764 5 C -0.547 4.547 6 H 0.024 0.976 7 C 0.006 3.994 8 N -0.949 5.949 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.278 1.278 12 H -0.220 1.220 13 S 2.772 3.228 14 O -1.014 7.014 15 O -0.984 6.984 16 N -0.990 5.990 17 C 0.113 3.887 18 C -0.135 4.135 19 C -0.105 4.105 20 C -0.126 4.126 21 C 0.101 3.899 22 H 0.146 0.854 23 C 0.350 3.650 24 C -0.196 4.196 25 O -0.491 6.491 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.268 0.732 34 H 0.112 0.888 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.165 0.672 11.916 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.024 4.024 3 N -0.828 5.828 4 C 0.111 3.889 5 C -0.587 4.587 6 H 0.042 0.958 7 C -0.192 4.192 8 N -0.589 5.589 9 Si 0.764 3.236 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.142 1.142 13 S 2.784 3.216 14 O -0.997 6.997 15 O -0.967 6.967 16 N -0.834 5.834 17 C -0.011 4.011 18 C -0.174 4.174 19 C -0.143 4.143 20 C -0.165 4.165 21 C -0.005 4.005 22 H 0.163 0.837 23 C 0.227 3.773 24 C -0.253 4.253 25 O -0.367 6.367 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.699 0.871 12.561 25.087 hybrid contribution 0.979 0.382 -0.906 1.388 sum -20.719 1.253 11.655 23.805 Atomic orbital electron populations 1.22282 0.92799 1.04108 1.03281 1.21616 0.96501 0.80880 1.03451 1.57425 1.81642 1.22985 1.20716 1.19211 0.95762 0.91625 0.82252 1.21711 1.04110 1.26709 1.06122 0.95788 1.25990 0.96820 0.98435 0.97959 1.70080 1.23140 1.45802 1.19915 0.85805 0.81353 0.78817 0.77671 1.19680 1.20353 1.14202 1.02031 0.73958 0.72970 0.72632 1.93541 1.66136 1.55232 1.84822 1.93504 1.80842 1.59402 1.62959 1.58132 1.43348 1.40162 1.41764 1.21746 1.00112 0.83769 0.95501 1.21935 1.00495 0.98271 0.96739 1.21452 0.98683 0.96585 0.97531 1.21884 1.01146 0.96230 0.97201 1.22082 0.97992 0.93612 0.86805 0.83660 1.24965 0.80523 0.93966 0.77875 1.22484 1.05394 0.92791 1.04602 1.90356 1.27213 1.86313 1.32823 0.91849 0.88754 0.91017 0.90931 0.89997 0.91995 0.95110 0.92320 0.86978 0.91722 0.94113 0.87958 0.90147 0.88532 0.93991 0.88162 0.88595 0.91302 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.35 71.98 0.67 -2.47 16 2 C 0.10 3.04 5.98 86.38 0.52 3.56 16 3 N -0.99 -38.08 2.83 -519.84 -1.47 -39.56 16 4 C 0.24 10.63 4.23 85.63 0.36 10.99 16 5 C -0.55 -31.92 9.91 25.60 0.25 -31.67 16 6 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 7 C 0.01 0.33 5.47 84.66 0.46 0.80 16 8 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 9 Si 0.94 42.12 27.47 68.60 1.88 44.00 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.22 -8.21 6.54 99.48 0.65 -7.56 16 13 S 2.77 111.18 5.90 -56.49 -0.33 110.85 16 14 O -1.01 -51.53 16.05 -128.00 -2.05 -53.59 16 15 O -0.98 -41.48 10.25 -118.56 -1.22 -42.69 16 16 N -0.99 -26.93 3.36 -494.01 -1.66 -28.59 16 17 C 0.11 2.48 6.43 86.36 0.56 3.03 16 18 C -0.14 -2.46 6.08 30.67 0.19 -2.27 16 19 C -0.11 -1.39 5.88 30.62 0.18 -1.21 16 20 C -0.13 -2.33 5.16 30.67 0.16 -2.17 16 21 C 0.10 2.10 3.14 44.17 0.14 2.24 16 22 H 0.15 1.56 7.80 -2.39 -0.02 1.54 16 23 C 0.35 9.72 3.64 29.10 0.11 9.82 16 24 C -0.20 -4.12 9.37 71.23 0.67 -3.45 16 25 O -0.49 -18.66 15.53 21.68 0.34 -18.32 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.07 7.51 -2.39 -0.02 1.05 16 29 H 0.07 2.45 8.10 -2.39 -0.02 2.43 16 30 H 0.08 2.40 4.92 -2.38 -0.01 2.39 16 31 H 0.06 2.45 7.19 -2.39 -0.02 2.44 16 32 H 0.03 1.40 6.75 -2.39 -0.02 1.38 16 33 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.77 7.33 -2.39 -0.02 1.75 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.04 1.09 7.69 -2.39 -0.02 1.07 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.10 2.02 3.48 -2.39 -0.01 2.01 16 43 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 44 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -87.35 349.26 0.98 -86.37 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.93 Total: 14.54 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.26 Total: -12.81 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -2.83 Total: -128.34 kcal Atomic # 8 Polarization: -111.67 SS G_CDS: -2.93 Total: -114.60 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.88 Total: 44.00 kcal Atomic # 16 Polarization: 111.18 SS G_CDS: -0.33 Total: 110.85 kcal Total: -87.35 0.98 -86.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000632383898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.005 kcal (2) G-P(sol) polarization free energy of solvation -87.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds