Wall clock time and date at job start Tue Mar 31 2020 13:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21299 * 120.00437 * 2 1 4 4 C 1.46837 * 119.99972 * 179.72227 * 2 1 3 5 5 C 1.40068 * 120.09622 * 359.72747 * 4 2 1 6 6 C 1.36603 * 119.88834 * 179.71839 * 5 4 2 7 7 C 1.39214 * 120.10657 * 0.55292 * 6 5 4 8 8 N 1.39303 * 119.90157 * 179.73823 * 7 6 5 9 9 C 1.34769 * 120.00175 * 213.56953 * 8 7 6 10 10 O 1.21578 * 120.00554 * 5.32238 * 9 8 7 11 11 N 1.34786 * 119.99897 * 185.32589 * 9 8 7 12 12 C 1.47014 * 125.64496 * 0.02562 * 11 9 8 13 13 C 1.54331 * 107.27071 * 181.02299 * 12 11 9 14 14 C 1.55161 * 102.93709 * 22.18975 * 13 12 11 15 15 O 1.42901 * 111.00098 * 82.57709 * 14 13 12 16 16 C 1.50701 * 111.00100 * 206.38308 * 14 13 12 17 17 H 1.08003 * 120.00422 * 0.02562 * 16 14 13 18 18 C 1.37882 * 119.99928 * 179.97438 * 16 14 13 19 19 N 1.31513 * 120.00066 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00023 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47179 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47169 * 120.00111 * 20 18 16 23 23 H 1.48504 * 109.47331 * 240.00253 * 20 18 16 24 24 C 1.47422 * 125.64714 * 179.71500 * 11 9 8 25 25 C 1.39222 * 120.20221 * 359.72113 * 7 6 5 26 26 C 1.36597 * 120.10307 * 359.97438 * 25 7 6 27 27 H 1.09004 * 109.47249 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47097 * 120.00475 * 1 2 3 29 29 H 1.09000 * 109.47447 * 240.00189 * 1 2 3 30 30 H 1.07992 * 120.05357 * 359.97438 * 5 4 2 31 31 H 1.08007 * 119.94269 * 180.25595 * 6 5 4 32 32 H 0.97002 * 119.99561 * 33.57001 * 8 7 6 33 33 H 1.09000 * 109.88378 * 300.43253 * 12 11 9 34 34 H 1.09001 * 109.88496 * 61.60834 * 12 11 9 35 35 H 1.08993 * 110.72236 * 140.55504 * 13 12 11 36 36 H 1.08995 * 110.71856 * 263.65347 * 13 12 11 37 37 H 0.96700 * 113.99747 * 179.97438 * 15 14 13 38 38 H 0.97000 * 120.00251 * 179.97438 * 19 18 16 39 39 H 1.08997 * 110.36656 * 274.74991 * 24 11 9 40 40 H 1.09003 * 110.36936 * 37.06823 * 24 11 9 41 41 H 1.08006 * 119.94787 * 179.97438 * 25 7 6 42 42 H 1.07994 * 120.05463 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2411 -1.2716 0.0062 5 6 1.5428 -2.4858 0.0178 6 6 2.2301 -3.6663 0.0177 7 6 3.6222 -3.6639 0.0176 8 7 4.3188 -4.8703 0.0230 9 6 5.4979 -4.9648 0.6688 10 8 5.9074 -4.0281 1.3269 11 7 6.2233 -6.0977 0.5849 12 6 5.8489 -7.3006 -0.1727 13 6 6.9648 -8.3444 0.0441 14 6 7.6270 -7.8754 1.3666 15 8 6.8944 -8.3442 2.5005 16 6 9.0660 -8.3175 1.4365 17 1 9.4972 -8.8836 0.6241 18 6 9.8326 -7.9981 2.5372 19 7 9.3078 -7.3083 3.5263 20 14 11.6165 -8.5454 2.6235 21 1 11.9626 -9.3011 1.3929 22 1 12.4951 -7.3534 2.7353 23 1 11.8103 -9.4163 3.8107 24 6 7.5266 -6.3333 1.2325 25 6 4.3205 -2.4595 0.0118 26 6 3.6418 -1.2741 0.0057 27 1 -0.3634 1.0277 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 -0.3634 -0.5138 0.8900 30 1 0.4629 -2.4886 0.0227 31 1 1.6925 -4.6031 0.0225 32 1 3.9550 -5.6423 -0.4380 33 1 4.9001 -7.6905 0.1958 34 1 5.7668 -7.0605 -1.2328 35 1 6.5424 -9.3428 0.1571 36 1 7.6801 -8.3207 -0.7780 37 1 7.2707 -8.0763 3.3500 38 1 9.8470 -7.0839 4.3008 39 1 8.3346 -5.9509 0.6089 40 1 7.5515 -5.8649 2.2164 41 1 5.4006 -2.4624 0.0122 42 1 4.1842 -0.3403 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000647669210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:57 Heat of formation + Delta-G solvation = -81.581778 kcal Electronic energy + Delta-G solvation = -26091.235676 eV Core-core repulsion = 22229.519299 eV Total energy + Delta-G solvation = -3861.716377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.70491 -39.71232 -38.42459 -37.27537 -34.66061 -34.37255 -32.22007 -31.76641 -30.92701 -30.21718 -28.73596 -27.86603 -25.34878 -23.78139 -22.78031 -22.52480 -20.20306 -19.74720 -19.59147 -18.20146 -17.40526 -17.16687 -16.63421 -15.81301 -15.38239 -15.18967 -15.12441 -14.72528 -14.64702 -14.29005 -14.10773 -13.77350 -13.45683 -13.15082 -13.00724 -12.87669 -12.80407 -12.38968 -12.36743 -12.21640 -11.70134 -11.61352 -11.30862 -11.12041 -10.90410 -10.70928 -10.53007 -10.37031 -10.24801 -9.99549 -9.74841 -9.50095 -9.14636 -8.76212 -8.50659 -8.22504 -7.83065 -6.36018 -4.45838 0.54372 1.35057 2.26222 2.77873 3.15759 3.24964 3.27726 3.37374 3.82302 3.95657 4.12476 4.22592 4.61422 4.79017 4.87890 4.90824 5.11794 5.13303 5.21337 5.25963 5.36804 5.46089 5.50197 5.64546 5.69450 5.85217 5.89875 5.96082 6.05195 6.22989 6.33341 6.38732 6.48045 6.59928 6.73310 6.76724 6.93408 7.07314 7.21267 7.36180 7.40733 7.67494 7.91351 8.20556 8.57923 8.78375 9.24186 9.37997 10.71283 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.002575 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.540449 B =10869.209222 C =11411.341461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.397 3.603 3 O -0.467 6.467 4 C -0.210 4.210 5 C -0.047 4.047 6 C -0.172 4.172 7 C 0.220 3.780 8 N -0.688 5.688 9 C 0.712 3.288 10 O -0.574 6.574 11 N -0.619 5.619 12 C 0.100 3.900 13 C -0.116 4.116 14 C 0.250 3.750 15 O -0.584 6.584 16 C -0.538 4.538 17 H 0.069 0.931 18 C 0.070 3.930 19 N -0.894 5.894 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.109 3.891 25 C -0.140 4.140 26 C -0.035 4.035 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.407 0.593 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.387 0.613 38 H 0.272 0.728 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.144 0.856 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.903 5.277 -9.013 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.277 3.723 3 O -0.344 6.344 4 C -0.212 4.212 5 C -0.066 4.066 6 C -0.193 4.193 7 C 0.122 3.878 8 N -0.335 5.335 9 C 0.415 3.585 10 O -0.451 6.451 11 N -0.354 5.354 12 C -0.023 4.023 13 C -0.154 4.154 14 C 0.209 3.791 15 O -0.394 6.394 16 C -0.576 4.576 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.533 5.533 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.013 4.013 25 C -0.160 4.160 26 C -0.054 4.054 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.243 0.757 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.239 0.761 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.161 0.839 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.545 6.299 -8.793 18.938 hybrid contribution 1.080 -0.592 0.367 1.285 sum -14.464 5.707 -8.426 17.686 Atomic orbital electron populations 1.22242 0.94104 1.04892 1.04420 1.22366 0.91488 0.87696 0.70768 1.90541 1.72222 1.34434 1.37204 1.20384 0.94558 0.94574 1.11690 1.20884 0.99694 0.90875 0.95127 1.20592 0.92000 0.99167 1.07565 1.17879 0.90644 0.85590 0.93704 1.42777 1.22041 1.12446 1.56221 1.15525 0.79659 0.83153 0.80204 1.90932 1.71037 1.37863 1.45238 1.47996 1.22997 1.12304 1.52150 1.22033 0.99430 0.86484 0.94338 1.22606 0.96254 0.97426 0.99106 1.19635 0.89828 0.86688 0.82981 1.86058 1.56379 1.78837 1.18171 1.21517 0.95064 1.36126 1.04942 0.91324 1.25097 0.99367 0.93588 0.95226 1.69566 1.37497 1.38041 1.08186 0.86321 0.83614 0.78533 0.78279 1.19549 1.20712 1.20696 1.23342 0.79532 1.00780 0.97630 1.21026 1.01851 0.90545 1.02623 1.21038 0.92918 0.98398 0.93006 0.89955 0.88957 0.88898 0.84934 0.85142 0.75700 0.92342 0.92755 0.90558 0.90302 0.76057 0.91820 0.92004 0.89816 0.83865 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.28 8.92 36.00 0.32 -0.96 16 2 C 0.40 4.33 7.22 -30.83 -0.22 4.11 16 3 O -0.47 -6.78 17.07 5.54 0.09 -6.69 16 4 C -0.21 -2.40 5.87 -105.05 -0.62 -3.02 16 5 C -0.05 -0.43 9.42 -39.49 -0.37 -0.81 16 6 C -0.17 -1.79 9.90 -39.81 -0.39 -2.19 16 7 C 0.22 3.00 6.27 -83.74 -0.53 2.48 16 8 N -0.69 -9.82 5.27 -14.21 -0.07 -9.89 16 9 C 0.71 13.57 8.21 -86.92 -0.71 12.86 16 10 O -0.57 -13.01 14.27 5.30 0.08 -12.94 16 11 N -0.62 -11.96 3.32 -176.11 -0.59 -12.54 16 12 C 0.10 1.59 6.16 -3.06 -0.02 1.57 16 13 C -0.12 -2.13 6.12 -24.89 -0.15 -2.28 16 14 C 0.25 5.76 0.89 -89.50 -0.08 5.68 16 15 O -0.58 -14.46 13.19 -35.23 -0.46 -14.92 16 16 C -0.54 -13.44 8.25 -34.44 -0.28 -13.72 16 17 H 0.07 1.68 7.77 -52.48 -0.41 1.27 16 18 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 19 N -0.89 -23.25 10.72 55.43 0.59 -22.65 16 20 Si 0.91 19.82 29.54 -169.99 -5.02 14.80 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.11 2.50 5.64 -2.41 -0.01 2.48 16 25 C -0.14 -2.08 8.58 -39.81 -0.34 -2.43 16 26 C -0.03 -0.47 9.55 -39.49 -0.38 -0.84 16 27 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.09 0.41 8.10 -51.93 -0.42 -0.01 16 29 H 0.09 0.45 8.07 -51.93 -0.42 0.03 16 30 H 0.13 0.75 7.03 -52.49 -0.37 0.38 16 31 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 32 H 0.41 4.51 7.80 -40.82 -0.32 4.19 16 33 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.08 1.36 8.02 -51.93 -0.42 0.94 16 37 H 0.39 10.03 6.93 45.56 0.32 10.34 16 38 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 39 H 0.06 1.45 8.04 -51.93 -0.42 1.03 16 40 H 0.08 2.19 7.64 -51.93 -0.40 1.80 16 41 H 0.14 2.43 6.41 -52.48 -0.34 2.09 16 42 H 0.13 1.76 7.64 -52.49 -0.40 1.36 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -30.95 353.33 -8.77 -39.72 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -4.83 Total: 15.17 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -3.88 Total: 4.62 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.07 Total: -45.09 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.29 Total: -34.55 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.95 -8.77 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000647669210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.858 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds