Wall clock time and date at job start Tue Mar 31 2020 13:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21299 * 120.00437 * 2 1 4 4 C 1.46837 * 119.99972 * 179.72227 * 2 1 3 5 5 C 1.40068 * 120.09622 * 359.72747 * 4 2 1 6 6 C 1.36603 * 119.88834 * 179.71839 * 5 4 2 7 7 C 1.39214 * 120.10657 * 0.55292 * 6 5 4 8 8 N 1.39303 * 119.90157 * 179.73823 * 7 6 5 9 9 C 1.34769 * 120.00175 * 213.56953 * 8 7 6 10 10 O 1.21578 * 120.00554 * 5.32238 * 9 8 7 11 11 N 1.34786 * 119.99897 * 185.32589 * 9 8 7 12 12 C 1.47014 * 125.64496 * 0.02562 * 11 9 8 13 13 C 1.54331 * 107.27071 * 181.02299 * 12 11 9 14 14 C 1.55161 * 102.93709 * 22.18975 * 13 12 11 15 15 O 1.42901 * 111.00098 * 82.57709 * 14 13 12 16 16 C 1.50701 * 111.00100 * 206.38308 * 14 13 12 17 17 H 1.08003 * 120.00422 * 0.02562 * 16 14 13 18 18 C 1.37882 * 119.99928 * 179.97438 * 16 14 13 19 19 N 1.31513 * 120.00066 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00023 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47179 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47169 * 120.00111 * 20 18 16 23 23 H 1.48504 * 109.47331 * 240.00253 * 20 18 16 24 24 C 1.47422 * 125.64714 * 179.71500 * 11 9 8 25 25 C 1.39222 * 120.20221 * 359.72113 * 7 6 5 26 26 C 1.36597 * 120.10307 * 359.97438 * 25 7 6 27 27 H 1.09004 * 109.47249 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47097 * 120.00475 * 1 2 3 29 29 H 1.09000 * 109.47447 * 240.00189 * 1 2 3 30 30 H 1.07992 * 120.05357 * 359.97438 * 5 4 2 31 31 H 1.08007 * 119.94269 * 180.25595 * 6 5 4 32 32 H 0.97002 * 119.99561 * 33.57001 * 8 7 6 33 33 H 1.09000 * 109.88378 * 300.43253 * 12 11 9 34 34 H 1.09001 * 109.88496 * 61.60834 * 12 11 9 35 35 H 1.08993 * 110.72236 * 140.55504 * 13 12 11 36 36 H 1.08995 * 110.71856 * 263.65347 * 13 12 11 37 37 H 0.96700 * 113.99747 * 179.97438 * 15 14 13 38 38 H 0.97000 * 120.00251 * 179.97438 * 19 18 16 39 39 H 1.08997 * 110.36656 * 274.74991 * 24 11 9 40 40 H 1.09003 * 110.36936 * 37.06823 * 24 11 9 41 41 H 1.08006 * 119.94787 * 179.97438 * 25 7 6 42 42 H 1.07994 * 120.05463 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2411 -1.2716 0.0062 5 6 1.5428 -2.4858 0.0178 6 6 2.2301 -3.6663 0.0177 7 6 3.6222 -3.6639 0.0176 8 7 4.3188 -4.8703 0.0230 9 6 5.4979 -4.9648 0.6688 10 8 5.9074 -4.0281 1.3269 11 7 6.2233 -6.0977 0.5849 12 6 5.8489 -7.3006 -0.1727 13 6 6.9648 -8.3444 0.0441 14 6 7.6270 -7.8754 1.3666 15 8 6.8944 -8.3442 2.5005 16 6 9.0660 -8.3175 1.4365 17 1 9.4972 -8.8836 0.6241 18 6 9.8326 -7.9981 2.5372 19 7 9.3078 -7.3083 3.5263 20 14 11.6165 -8.5454 2.6235 21 1 11.9626 -9.3011 1.3929 22 1 12.4951 -7.3534 2.7353 23 1 11.8103 -9.4163 3.8107 24 6 7.5266 -6.3333 1.2325 25 6 4.3205 -2.4595 0.0118 26 6 3.6418 -1.2741 0.0057 27 1 -0.3634 1.0277 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 -0.3634 -0.5138 0.8900 30 1 0.4629 -2.4886 0.0227 31 1 1.6925 -4.6031 0.0225 32 1 3.9550 -5.6423 -0.4380 33 1 4.9001 -7.6905 0.1958 34 1 5.7668 -7.0605 -1.2328 35 1 6.5424 -9.3428 0.1571 36 1 7.6801 -8.3207 -0.7780 37 1 7.2707 -8.0763 3.3500 38 1 9.8470 -7.0839 4.3008 39 1 8.3346 -5.9509 0.6089 40 1 7.5515 -5.8649 2.2164 41 1 5.4006 -2.4624 0.0122 42 1 4.1842 -0.3403 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000647669210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:56 Heat of formation + Delta-G solvation = -103.587145 kcal Electronic energy + Delta-G solvation = -26092.189901 eV Core-core repulsion = 22229.519299 eV Total energy + Delta-G solvation = -3862.670601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94880 -40.80597 -39.68636 -38.68821 -36.18872 -35.83163 -34.16605 -32.70678 -32.09069 -31.43051 -29.80268 -29.36067 -27.07610 -25.03967 -23.83206 -23.74320 -21.51979 -21.25060 -20.71916 -19.55081 -19.06977 -18.51547 -17.63241 -17.09936 -17.03344 -16.59863 -16.20061 -16.14315 -15.94365 -15.50867 -15.13833 -14.90798 -14.86722 -14.67608 -14.44091 -13.97342 -13.81198 -13.69461 -13.50245 -13.33623 -13.01215 -12.94260 -12.88472 -12.55165 -12.32148 -12.24955 -12.20485 -12.11608 -11.60091 -11.32170 -11.25078 -10.74859 -10.67144 -10.35688 -10.08806 -9.63629 -9.10848 -8.27780 -6.44340 -0.40545 0.42881 1.30579 1.39558 1.43804 1.49283 1.54563 2.00195 2.36599 2.84025 2.87019 2.98915 3.19153 3.76382 3.77755 3.91996 4.08016 4.13258 4.21476 4.30291 4.33067 4.39163 4.48964 4.60857 4.69396 4.71824 4.76077 4.93964 5.00926 5.07115 5.10959 5.13225 5.25470 5.29386 5.35012 5.39035 5.44134 5.50024 5.75355 5.91466 5.96382 6.05744 6.59720 6.62996 6.84715 7.28430 7.34847 7.37394 8.77825 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.002575 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.540449 B =10869.209222 C =11411.341461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.396 3.604 3 O -0.516 6.516 4 C -0.214 4.214 5 C -0.026 4.026 6 C -0.156 4.156 7 C 0.195 3.805 8 N -0.667 5.667 9 C 0.708 3.292 10 O -0.622 6.622 11 N -0.624 5.624 12 C 0.102 3.898 13 C -0.111 4.111 14 C 0.232 3.768 15 O -0.589 6.589 16 C -0.553 4.553 17 H 0.072 0.928 18 C 0.024 3.976 19 N -0.918 5.918 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.280 1.280 24 C 0.123 3.877 25 C -0.163 4.163 26 C -0.055 4.055 27 H 0.081 0.919 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.186 0.814 31 H 0.170 0.830 32 H 0.426 0.574 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.377 0.623 38 H 0.270 0.730 39 H 0.046 0.954 40 H 0.039 0.961 41 H 0.107 0.893 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.528 3.759 -10.758 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.278 3.722 3 O -0.396 6.396 4 C -0.216 4.216 5 C -0.045 4.045 6 C -0.176 4.176 7 C 0.098 3.902 8 N -0.315 5.315 9 C 0.411 3.589 10 O -0.502 6.502 11 N -0.359 5.359 12 C -0.020 4.020 13 C -0.148 4.148 14 C 0.192 3.808 15 O -0.398 6.398 16 C -0.591 4.591 17 H 0.090 0.910 18 C -0.177 4.177 19 N -0.558 5.558 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.206 1.206 24 C -0.001 4.001 25 C -0.184 4.184 26 C -0.074 4.074 27 H 0.100 0.900 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.203 0.797 31 H 0.187 0.813 32 H 0.265 0.735 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.228 0.772 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.125 0.875 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.236 4.742 -10.598 22.468 hybrid contribution 2.143 -0.052 0.894 2.323 sum -17.093 4.691 -9.704 20.208 Atomic orbital electron populations 1.22287 0.89645 1.05904 1.06981 1.23093 0.93765 0.86462 0.68836 1.90538 1.73634 1.35863 1.39560 1.20705 0.93550 0.96478 1.10833 1.21421 1.02044 0.88971 0.92041 1.21015 0.90125 1.01356 1.05117 1.18137 0.92155 0.84450 0.95476 1.42389 1.20276 1.13462 1.55409 1.15705 0.80735 0.82308 0.80174 1.90905 1.72466 1.39486 1.47357 1.47890 1.21949 1.13646 1.52445 1.22253 0.99196 0.84259 0.96285 1.22606 0.97081 0.98745 0.96409 1.19891 0.89796 0.86720 0.84429 1.86045 1.56619 1.78950 1.18204 1.21874 0.96349 1.35925 1.04975 0.90975 1.25847 1.02931 0.93740 0.95138 1.69684 1.38588 1.38978 1.08591 0.85401 0.79296 0.77877 0.78423 1.18568 1.21115 1.20582 1.22850 0.81280 1.00630 0.95341 1.20814 1.00401 0.92244 1.04902 1.21006 0.94572 0.97331 0.94462 0.90027 0.85828 0.86277 0.79660 0.81267 0.73489 0.90083 0.88651 0.89367 0.89160 0.77216 0.92048 0.93562 0.94245 0.87482 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.61 8.92 71.23 0.64 -0.98 16 2 C 0.40 7.92 7.22 27.94 0.20 8.12 16 3 O -0.52 -15.19 17.07 -3.09 -0.05 -15.24 16 4 C -0.21 -4.52 5.87 -20.14 -0.12 -4.64 16 5 C -0.03 -0.36 9.42 22.33 0.21 -0.15 16 6 C -0.16 -2.58 9.90 22.12 0.22 -2.36 16 7 C 0.19 5.10 6.27 38.43 0.24 5.34 16 8 N -0.67 -18.11 5.27 -317.15 -1.67 -19.78 16 9 C 0.71 27.48 8.21 179.05 1.47 28.95 16 10 O -0.62 -30.05 14.27 -3.96 -0.06 -30.11 16 11 N -0.62 -24.14 3.32 -829.34 -2.76 -26.90 16 12 C 0.10 2.94 6.16 86.73 0.53 3.48 16 13 C -0.11 -3.86 6.12 31.79 0.19 -3.66 16 14 C 0.23 10.82 0.89 -10.07 -0.01 10.82 16 15 O -0.59 -29.64 13.19 -148.98 -1.97 -31.60 16 16 C -0.55 -27.91 8.25 25.60 0.21 -27.70 16 17 H 0.07 3.50 7.77 -2.91 -0.02 3.48 16 18 C 0.02 1.23 5.29 84.66 0.45 1.68 16 19 N -0.92 -49.70 10.72 21.45 0.23 -49.47 16 20 Si 0.96 41.23 29.54 68.60 2.03 43.26 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 C 0.12 5.86 5.64 86.93 0.49 6.36 16 25 C -0.16 -5.14 8.58 22.12 0.19 -4.95 16 26 C -0.05 -1.55 9.55 22.33 0.21 -1.34 16 27 H 0.08 0.77 8.12 -2.38 -0.02 0.75 16 28 H 0.12 0.34 8.10 -2.38 -0.02 0.32 16 29 H 0.12 0.46 8.07 -2.39 -0.02 0.44 16 30 H 0.19 0.65 7.03 -2.91 -0.02 0.63 16 31 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 32 H 0.43 8.02 7.80 -92.71 -0.72 7.30 16 33 H 0.08 2.02 8.12 -2.39 -0.02 2.00 16 34 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.09 2.91 8.02 -2.39 -0.02 2.89 16 37 H 0.38 20.35 6.93 -74.06 -0.51 19.83 16 38 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 39 H 0.05 2.29 8.04 -2.39 -0.02 2.27 16 40 H 0.04 2.20 7.64 -2.39 -0.02 2.19 16 41 H 0.11 4.09 6.41 -2.91 -0.02 4.07 16 42 H 0.12 3.53 7.64 -2.91 -0.02 3.51 16 Total: -1.00 -74.95 353.33 0.72 -74.23 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: -0.17 Total: 36.64 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 5.13 Total: 18.96 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -4.20 Total: -96.14 kcal Atomic # 8 Polarization: -74.88 SS G_CDS: -2.07 Total: -76.95 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -74.95 0.72 -74.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000647669210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.357 kcal (2) G-P(sol) polarization free energy of solvation -74.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds