Wall clock time and date at job start Tue Mar 31 2020 13:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21304 * 119.99315 * 2 1 4 4 C 1.46826 * 120.00359 * 180.02562 * 2 1 3 5 5 C 1.40061 * 120.09842 * 359.72479 * 4 2 1 6 6 C 1.36605 * 119.89444 * 179.74007 * 5 4 2 7 7 C 1.39218 * 120.10374 * 0.53749 * 6 5 4 8 8 N 1.39292 * 119.90185 * 179.71602 * 7 6 5 9 9 C 1.34774 * 120.00217 * 213.59579 * 8 7 6 10 10 O 1.21579 * 119.99960 * 5.32240 * 9 8 7 11 11 N 1.34777 * 120.00338 * 185.32184 * 9 8 7 12 12 C 1.47027 * 125.64736 * 359.69544 * 11 9 8 13 13 C 1.54326 * 107.26741 * 178.84633 * 12 11 9 14 14 C 1.55155 * 103.02129 * 338.14058 * 13 12 11 15 15 O 1.42901 * 111.00765 * 277.23195 * 14 13 12 16 16 C 1.50706 * 111.03828 * 153.39483 * 14 13 12 17 17 H 1.07995 * 120.00142 * 6.32909 * 16 14 13 18 18 C 1.37875 * 119.99836 * 186.33149 * 16 14 13 19 19 N 1.31515 * 120.00263 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99787 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47282 * 60.00077 * 20 18 16 22 22 H 1.48504 * 109.46841 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46983 * 299.99861 * 20 18 16 24 24 C 1.47429 * 125.65300 * 179.97438 * 11 9 8 25 25 C 1.39222 * 120.19805 * 359.73395 * 7 6 5 26 26 C 1.36601 * 120.10543 * 359.97438 * 25 7 6 27 27 H 1.08998 * 109.47294 * 239.99754 * 1 2 3 28 28 H 1.09003 * 109.47188 * 120.00336 * 1 2 3 29 29 H 1.08999 * 109.47740 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.05467 * 359.97438 * 5 4 2 31 31 H 1.07997 * 119.94707 * 180.27043 * 6 5 4 32 32 H 0.97006 * 119.99854 * 33.59482 * 8 7 6 33 33 H 1.09000 * 109.87968 * 298.39325 * 12 11 9 34 34 H 1.08998 * 109.88067 * 59.55623 * 12 11 9 35 35 H 1.08997 * 110.85243 * 219.67464 * 13 12 11 36 36 H 1.09003 * 110.51571 * 96.45139 * 13 12 11 37 37 H 0.96693 * 114.00766 * 173.64986 * 15 14 13 38 38 H 0.96998 * 120.00054 * 180.02562 * 19 18 16 39 39 H 1.08999 * 110.36473 * 322.93519 * 24 11 9 40 40 H 1.08998 * 110.36487 * 85.14204 * 24 11 9 41 41 H 1.08011 * 119.94887 * 179.97438 * 25 7 6 42 42 H 1.08004 * 120.04895 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2412 -1.2715 -0.0006 5 6 1.5430 -2.4857 0.0047 6 6 2.2303 -3.6663 -0.0012 7 6 3.6225 -3.6638 -0.0012 8 7 4.3190 -4.8700 -0.0013 9 6 5.4979 -4.9675 0.6446 10 8 5.9070 -4.0340 1.3074 11 7 6.2234 -6.0999 0.5558 12 6 5.8463 -7.3020 -0.2022 13 6 6.9897 -8.3252 -0.0370 14 6 8.2017 -7.4360 0.3472 15 8 8.8109 -6.8702 -0.8151 16 6 9.2078 -8.2130 1.1567 17 1 9.0770 -9.2747 1.3054 18 6 10.2951 -7.5685 1.7074 19 7 10.4540 -6.2756 1.5268 20 14 11.5425 -8.5318 2.7102 21 1 12.1452 -9.5926 1.8637 22 1 12.6085 -7.6146 3.1873 23 1 10.8656 -9.1541 3.8764 24 6 7.5239 -6.3406 1.2072 25 6 4.3206 -2.4592 -0.0007 26 6 3.6418 -1.2739 -0.0008 27 1 -0.3634 -0.5139 0.8899 28 1 -0.3634 -0.5139 -0.8900 29 1 -0.3634 1.0276 0.0005 30 1 0.4631 -2.4887 0.0096 31 1 1.6928 -4.6030 -0.0016 32 1 3.9556 -5.6400 -0.4662 33 1 4.9178 -7.7135 0.1936 34 1 5.7240 -7.0524 -1.2561 35 1 7.1783 -8.8506 -0.9732 36 1 6.7595 -9.0296 0.7623 37 1 9.5104 -6.2314 -0.6212 38 1 11.2192 -5.8222 1.9140 39 1 8.1238 -5.4305 1.2042 40 1 7.3773 -6.6940 2.2278 41 1 5.4007 -2.4620 -0.0003 42 1 4.1843 -0.3400 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000647669211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:01 Heat of formation + Delta-G solvation = -81.337043 kcal Electronic energy + Delta-G solvation = -26125.971539 eV Core-core repulsion = 22264.265774 eV Total energy + Delta-G solvation = -3861.705764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.69978 -39.70844 -38.42695 -37.28173 -34.65554 -34.34323 -32.29321 -31.75771 -30.91995 -30.21468 -28.73091 -27.82414 -25.34412 -23.77789 -22.77112 -22.52866 -20.20021 -19.76190 -19.58557 -18.19922 -17.36840 -17.13139 -16.62615 -15.86786 -15.32504 -15.19120 -15.12779 -14.72143 -14.55846 -14.40236 -14.10015 -13.77588 -13.45671 -13.17829 -12.96013 -12.83926 -12.81882 -12.37448 -12.34059 -12.24061 -11.73849 -11.59056 -11.29578 -11.07350 -10.92998 -10.72429 -10.55029 -10.37163 -10.24446 -9.98901 -9.74288 -9.45575 -9.13772 -8.75686 -8.48675 -8.23086 -7.83472 -6.33337 -4.43594 0.54996 1.35754 2.26776 2.78567 3.18969 3.25335 3.26535 3.38172 3.82964 3.96109 4.12968 4.23957 4.61558 4.79184 4.88124 4.93222 5.12263 5.13105 5.21883 5.25885 5.36867 5.47043 5.49587 5.62553 5.69760 5.85273 5.89197 5.96738 6.05517 6.23965 6.34459 6.39131 6.49628 6.59407 6.76116 6.77736 6.94332 7.07721 7.20564 7.39381 7.41417 7.68157 7.95074 8.21078 8.59869 8.78959 9.22915 9.31638 10.73719 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028723 B = 0.002608 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.580542 B =10735.189796 C =11303.306010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.397 3.603 3 O -0.467 6.467 4 C -0.210 4.210 5 C -0.048 4.048 6 C -0.173 4.173 7 C 0.220 3.780 8 N -0.688 5.688 9 C 0.712 3.288 10 O -0.573 6.573 11 N -0.620 5.620 12 C 0.100 3.900 13 C -0.115 4.115 14 C 0.249 3.751 15 O -0.583 6.583 16 C -0.540 4.540 17 H 0.067 0.933 18 C 0.072 3.928 19 N -0.892 5.892 20 Si 0.904 3.096 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.111 3.889 25 C -0.139 4.139 26 C -0.034 4.034 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.407 0.593 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.382 0.618 38 H 0.272 0.728 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.145 0.855 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.634 3.220 -4.453 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.276 3.724 3 O -0.344 6.344 4 C -0.212 4.212 5 C -0.066 4.066 6 C -0.194 4.194 7 C 0.122 3.878 8 N -0.335 5.335 9 C 0.414 3.586 10 O -0.450 6.450 11 N -0.356 5.356 12 C -0.023 4.023 13 C -0.153 4.153 14 C 0.209 3.791 15 O -0.391 6.391 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.530 5.530 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.010 4.010 25 C -0.159 4.159 26 C -0.053 4.053 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.243 0.757 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.232 0.768 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.162 0.838 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.251 4.192 -4.202 19.192 hybrid contribution 0.844 -0.728 0.697 1.315 sum -17.408 3.464 -3.504 18.091 Atomic orbital electron populations 1.22240 0.94122 1.04886 1.04394 1.22364 0.91478 0.87709 0.70799 1.90545 1.72232 1.34414 1.37165 1.20379 0.94561 0.94568 1.11684 1.20875 0.99661 0.90889 0.95218 1.20574 0.91968 0.99118 1.07725 1.17876 0.90615 0.85595 0.93763 1.42776 1.22096 1.12598 1.56029 1.15523 0.79682 0.83066 0.80284 1.90935 1.70872 1.37944 1.45261 1.48042 1.23137 1.12528 1.51871 1.22038 0.98390 0.86567 0.95353 1.22595 0.93886 0.96717 1.02129 1.19618 0.88765 0.87855 0.82881 1.86103 1.55910 1.63140 1.33963 1.21393 1.07885 0.95510 1.33012 0.91502 1.25085 0.97768 0.95003 0.95350 1.69696 1.30235 1.08236 1.44819 0.86448 0.80485 0.79695 0.80206 1.19976 1.21052 1.20002 1.23274 0.79412 1.02201 0.96150 1.21058 1.01963 0.90524 1.02403 1.21050 0.92901 0.98440 0.92942 0.88941 0.88951 0.89958 0.84963 0.85203 0.75728 0.92814 0.92285 0.90549 0.90267 0.76819 0.91838 0.89348 0.92097 0.83764 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.28 8.92 36.00 0.32 -0.96 16 2 C 0.40 4.35 7.21 -30.84 -0.22 4.13 16 3 O -0.47 -6.83 17.07 5.54 0.09 -6.74 16 4 C -0.21 -2.42 5.87 -105.06 -0.62 -3.03 16 5 C -0.05 -0.44 9.42 -39.49 -0.37 -0.81 16 6 C -0.17 -1.77 9.90 -39.81 -0.39 -2.17 16 7 C 0.22 3.01 6.27 -83.74 -0.53 2.48 16 8 N -0.69 -9.81 5.27 -14.21 -0.07 -9.88 16 9 C 0.71 13.56 8.21 -86.92 -0.71 12.84 16 10 O -0.57 -13.00 14.27 5.30 0.08 -12.93 16 11 N -0.62 -11.97 3.33 -176.25 -0.59 -12.55 16 12 C 0.10 1.58 6.16 -3.06 -0.02 1.56 16 13 C -0.12 -2.12 6.13 -24.90 -0.15 -2.27 16 14 C 0.25 5.74 0.87 -89.63 -0.08 5.66 16 15 O -0.58 -14.22 13.16 -35.23 -0.46 -14.69 16 16 C -0.54 -13.51 8.27 -34.44 -0.28 -13.80 16 17 H 0.07 1.63 7.79 -52.49 -0.41 1.23 16 18 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 19 N -0.89 -23.22 10.69 55.43 0.59 -22.63 16 20 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 C 0.11 2.55 5.38 -2.54 -0.01 2.54 16 25 C -0.14 -2.11 8.58 -39.81 -0.34 -2.45 16 26 C -0.03 -0.47 9.55 -39.49 -0.38 -0.85 16 27 H 0.09 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.09 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.08 0.53 8.12 -51.93 -0.42 0.10 16 30 H 0.13 0.73 7.03 -52.49 -0.37 0.36 16 31 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.41 4.48 7.81 -40.82 -0.32 4.16 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 37 H 0.38 9.65 7.56 45.56 0.34 9.99 16 38 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.09 2.31 7.33 -51.93 -0.38 1.93 16 40 H 0.06 1.45 8.03 -51.93 -0.42 1.04 16 41 H 0.14 2.54 6.41 -52.48 -0.34 2.21 16 42 H 0.13 1.81 7.64 -52.48 -0.40 1.41 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -30.93 353.39 -8.73 -39.66 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -4.79 Total: 14.96 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -3.88 Total: 4.60 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.07 Total: -45.07 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.29 Total: -34.35 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.93 -8.73 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000647669211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.677 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds