Wall clock time and date at job start Tue Mar 31 2020 13:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21304 * 119.99315 * 2 1 4 4 C 1.46826 * 120.00359 * 180.02562 * 2 1 3 5 5 C 1.40061 * 120.09842 * 359.72479 * 4 2 1 6 6 C 1.36605 * 119.89444 * 179.74007 * 5 4 2 7 7 C 1.39218 * 120.10374 * 0.53749 * 6 5 4 8 8 N 1.39292 * 119.90185 * 179.71602 * 7 6 5 9 9 C 1.34774 * 120.00217 * 213.59579 * 8 7 6 10 10 O 1.21579 * 119.99960 * 5.32240 * 9 8 7 11 11 N 1.34777 * 120.00338 * 185.32184 * 9 8 7 12 12 C 1.47027 * 125.64736 * 359.69544 * 11 9 8 13 13 C 1.54326 * 107.26741 * 178.84633 * 12 11 9 14 14 C 1.55155 * 103.02129 * 338.14058 * 13 12 11 15 15 O 1.42901 * 111.00765 * 277.23195 * 14 13 12 16 16 C 1.50706 * 111.03828 * 153.39483 * 14 13 12 17 17 H 1.07995 * 120.00142 * 6.32909 * 16 14 13 18 18 C 1.37875 * 119.99836 * 186.33149 * 16 14 13 19 19 N 1.31515 * 120.00263 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99787 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47282 * 60.00077 * 20 18 16 22 22 H 1.48504 * 109.46841 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46983 * 299.99861 * 20 18 16 24 24 C 1.47429 * 125.65300 * 179.97438 * 11 9 8 25 25 C 1.39222 * 120.19805 * 359.73395 * 7 6 5 26 26 C 1.36601 * 120.10543 * 359.97438 * 25 7 6 27 27 H 1.08998 * 109.47294 * 239.99754 * 1 2 3 28 28 H 1.09003 * 109.47188 * 120.00336 * 1 2 3 29 29 H 1.08999 * 109.47740 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.05467 * 359.97438 * 5 4 2 31 31 H 1.07997 * 119.94707 * 180.27043 * 6 5 4 32 32 H 0.97006 * 119.99854 * 33.59482 * 8 7 6 33 33 H 1.09000 * 109.87968 * 298.39325 * 12 11 9 34 34 H 1.08998 * 109.88067 * 59.55623 * 12 11 9 35 35 H 1.08997 * 110.85243 * 219.67464 * 13 12 11 36 36 H 1.09003 * 110.51571 * 96.45139 * 13 12 11 37 37 H 0.96693 * 114.00766 * 173.64986 * 15 14 13 38 38 H 0.96998 * 120.00054 * 180.02562 * 19 18 16 39 39 H 1.08999 * 110.36473 * 322.93519 * 24 11 9 40 40 H 1.08998 * 110.36487 * 85.14204 * 24 11 9 41 41 H 1.08011 * 119.94887 * 179.97438 * 25 7 6 42 42 H 1.08004 * 120.04895 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2412 -1.2715 -0.0006 5 6 1.5430 -2.4857 0.0047 6 6 2.2303 -3.6663 -0.0012 7 6 3.6225 -3.6638 -0.0012 8 7 4.3190 -4.8700 -0.0013 9 6 5.4979 -4.9675 0.6446 10 8 5.9070 -4.0340 1.3074 11 7 6.2234 -6.0999 0.5558 12 6 5.8463 -7.3020 -0.2022 13 6 6.9897 -8.3252 -0.0370 14 6 8.2017 -7.4360 0.3472 15 8 8.8109 -6.8702 -0.8151 16 6 9.2078 -8.2130 1.1567 17 1 9.0770 -9.2747 1.3054 18 6 10.2951 -7.5685 1.7074 19 7 10.4540 -6.2756 1.5268 20 14 11.5425 -8.5318 2.7102 21 1 12.1452 -9.5926 1.8637 22 1 12.6085 -7.6146 3.1873 23 1 10.8656 -9.1541 3.8764 24 6 7.5239 -6.3406 1.2072 25 6 4.3206 -2.4592 -0.0007 26 6 3.6418 -1.2739 -0.0008 27 1 -0.3634 -0.5139 0.8899 28 1 -0.3634 -0.5139 -0.8900 29 1 -0.3634 1.0276 0.0005 30 1 0.4631 -2.4887 0.0096 31 1 1.6928 -4.6030 -0.0016 32 1 3.9556 -5.6400 -0.4662 33 1 4.9178 -7.7135 0.1936 34 1 5.7240 -7.0524 -1.2561 35 1 7.1783 -8.8506 -0.9732 36 1 6.7595 -9.0296 0.7623 37 1 9.5104 -6.2314 -0.6212 38 1 11.2192 -5.8222 1.9140 39 1 8.1238 -5.4305 1.2042 40 1 7.3773 -6.6940 2.2278 41 1 5.4007 -2.4620 -0.0003 42 1 4.1843 -0.3400 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000647669211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:00 Heat of formation + Delta-G solvation = -103.605162 kcal Electronic energy + Delta-G solvation = -26126.937157 eV Core-core repulsion = 22264.265774 eV Total energy + Delta-G solvation = -3862.671383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.94705 -40.80705 -39.69528 -38.69130 -36.16675 -35.81819 -34.24590 -32.70367 -32.08444 -31.42959 -29.78291 -29.34026 -27.07549 -25.04178 -23.83650 -23.74111 -21.53476 -21.25314 -20.71512 -19.54221 -18.99176 -18.54463 -17.62300 -17.12471 -17.04878 -16.54050 -16.23845 -16.13524 -15.94438 -15.49290 -15.21221 -14.97274 -14.78178 -14.65599 -14.43992 -13.91909 -13.82238 -13.72457 -13.52947 -13.30709 -13.01383 -12.93922 -12.81837 -12.55216 -12.35370 -12.29136 -12.25274 -12.10209 -11.58755 -11.31528 -11.20315 -10.74451 -10.67407 -10.34878 -10.08753 -9.64341 -9.10615 -8.25822 -6.43111 -0.40477 0.42978 1.29533 1.42690 1.43593 1.50528 1.52526 2.00699 2.37223 2.84121 2.87447 3.00595 3.19264 3.76475 3.77199 3.91982 4.04652 4.14699 4.21685 4.29286 4.33673 4.39633 4.49392 4.60729 4.69621 4.73277 4.76565 4.93830 5.04207 5.07523 5.11414 5.13608 5.25712 5.29440 5.35003 5.38355 5.45331 5.50541 5.74459 5.91747 5.98255 6.08576 6.60119 6.63948 6.85362 7.25267 7.33612 7.35646 8.78897 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028723 B = 0.002608 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.580542 B =10735.189796 C =11303.306010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.395 3.605 3 O -0.517 6.517 4 C -0.213 4.213 5 C -0.026 4.026 6 C -0.153 4.153 7 C 0.195 3.805 8 N -0.667 5.667 9 C 0.708 3.292 10 O -0.621 6.621 11 N -0.625 5.625 12 C 0.101 3.899 13 C -0.110 4.110 14 C 0.231 3.769 15 O -0.588 6.588 16 C -0.555 4.555 17 H 0.071 0.929 18 C 0.025 3.975 19 N -0.916 5.916 20 Si 0.963 3.037 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.269 1.269 24 C 0.126 3.874 25 C -0.165 4.165 26 C -0.055 4.055 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.188 0.812 31 H 0.173 0.827 32 H 0.426 0.574 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.372 0.628 38 H 0.268 0.732 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.103 0.897 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.130 1.048 -5.031 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.278 3.722 3 O -0.397 6.397 4 C -0.215 4.215 5 C -0.044 4.044 6 C -0.174 4.174 7 C 0.098 3.902 8 N -0.315 5.315 9 C 0.411 3.589 10 O -0.502 6.502 11 N -0.361 5.361 12 C -0.020 4.020 13 C -0.148 4.148 14 C 0.191 3.809 15 O -0.395 6.395 16 C -0.593 4.593 17 H 0.089 0.911 18 C -0.176 4.176 19 N -0.555 5.555 20 Si 0.788 3.212 21 H -0.194 1.194 22 H -0.214 1.214 23 H -0.194 1.194 24 C 0.003 3.997 25 C -0.185 4.185 26 C -0.074 4.074 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.099 0.901 30 H 0.205 0.795 31 H 0.190 0.810 32 H 0.266 0.734 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.221 0.779 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.121 0.879 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -22.820 1.973 -4.826 23.408 hybrid contribution 2.180 0.011 0.856 2.342 sum -20.640 1.984 -3.970 21.111 Atomic orbital electron populations 1.22285 0.89544 1.05908 1.07023 1.23113 0.93809 0.86452 0.68831 1.90542 1.73679 1.35886 1.39570 1.20701 0.93430 0.96581 1.10830 1.21436 1.02079 0.88921 0.91989 1.21020 0.89924 1.01423 1.05006 1.18134 0.92215 0.84345 0.95491 1.42384 1.20338 1.13596 1.55214 1.15706 0.80755 0.82201 0.80280 1.90909 1.72318 1.39549 1.47413 1.47930 1.22031 1.13953 1.52147 1.22261 0.99083 0.84411 0.96290 1.22602 0.92296 0.96824 1.03059 1.19880 0.90006 0.88423 0.82582 1.86094 1.55671 1.62912 1.34824 1.21772 1.08503 0.95913 1.33115 0.91059 1.25842 0.99617 0.95712 0.96425 1.69837 1.30520 1.09486 1.45678 0.85528 0.78261 0.78382 0.78992 1.19391 1.21441 1.19354 1.22751 0.81037 1.00143 0.95775 1.20813 1.00275 0.92448 1.05013 1.20995 0.94660 0.97246 0.94541 0.86165 0.85820 0.90061 0.79510 0.80951 0.73448 0.88203 0.90466 0.89448 0.89000 0.77919 0.92252 0.93750 0.93858 0.87901 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 8.92 71.23 0.64 -0.95 16 2 C 0.40 7.97 7.21 27.93 0.20 8.17 16 3 O -0.52 -15.41 17.07 -3.11 -0.05 -15.46 16 4 C -0.21 -4.55 5.87 -20.15 -0.12 -4.67 16 5 C -0.03 -0.35 9.42 22.33 0.21 -0.14 16 6 C -0.15 -2.44 9.90 22.12 0.22 -2.23 16 7 C 0.20 5.12 6.27 38.43 0.24 5.37 16 8 N -0.67 -18.07 5.27 -317.15 -1.67 -19.74 16 9 C 0.71 27.50 8.21 179.06 1.47 28.97 16 10 O -0.62 -30.16 14.27 -3.97 -0.06 -30.22 16 11 N -0.63 -24.19 3.33 -829.79 -2.76 -26.95 16 12 C 0.10 2.92 6.16 86.73 0.53 3.45 16 13 C -0.11 -3.83 6.13 31.78 0.19 -3.64 16 14 C 0.23 10.80 0.87 -10.16 -0.01 10.79 16 15 O -0.59 -29.50 13.16 -148.98 -1.96 -31.46 16 16 C -0.55 -28.10 8.27 25.60 0.21 -27.89 16 17 H 0.07 3.46 7.79 -2.91 -0.02 3.43 16 18 C 0.03 1.30 5.29 84.65 0.45 1.74 16 19 N -0.92 -50.00 10.69 21.45 0.23 -49.77 16 20 Si 0.96 41.38 29.54 68.60 2.03 43.40 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 22 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 C 0.13 6.06 5.38 86.85 0.47 6.53 16 25 C -0.16 -5.36 8.58 22.12 0.19 -5.17 16 26 C -0.06 -1.61 9.55 22.33 0.21 -1.40 16 27 H 0.12 0.41 8.08 -2.39 -0.02 0.39 16 28 H 0.12 0.32 8.09 -2.39 -0.02 0.30 16 29 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 30 H 0.19 0.53 7.03 -2.91 -0.02 0.51 16 31 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.43 7.89 7.81 -92.70 -0.72 7.17 16 33 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.09 2.94 8.03 -2.39 -0.02 2.92 16 37 H 0.37 19.89 7.56 -74.06 -0.56 19.33 16 38 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 39 H 0.04 2.49 7.33 -2.39 -0.02 2.47 16 40 H 0.04 2.17 8.03 -2.39 -0.02 2.15 16 41 H 0.10 4.14 6.41 -2.90 -0.02 4.12 16 42 H 0.12 3.60 7.64 -2.91 -0.02 3.58 16 Total: -1.00 -75.97 353.39 0.65 -75.32 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.21 Total: 35.92 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 5.11 Total: 18.95 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -4.20 Total: -96.45 kcal Atomic # 8 Polarization: -75.07 SS G_CDS: -2.07 Total: -77.14 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -75.97 0.65 -75.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000647669211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.284 kcal (2) G-P(sol) polarization free energy of solvation -75.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds