Wall clock time and date at job start Tue Mar 31 2020 13:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47113 * 2 1 4 4 C 1.34770 * 119.99953 * 89.99816 * 3 2 1 5 5 O 1.21284 * 119.99611 * 180.02562 * 4 3 2 6 6 C 1.50699 * 120.00651 * 0.02562 * 4 3 2 7 7 H 1.09000 * 109.46438 * 319.99712 * 6 4 3 8 8 N 1.46897 * 109.47303 * 200.00095 * 6 4 3 9 9 C 1.52994 * 109.47013 * 79.99298 * 6 4 3 10 10 C 1.52996 * 109.47119 * 185.00236 * 9 6 4 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.46504 * 119.99612 * 270.00147 * 3 2 1 20 20 H 1.09003 * 110.01337 * 358.61913 * 19 3 2 21 21 C 1.53880 * 110.02690 * 237.19214 * 19 3 2 22 22 C 1.54160 * 108.70421 * 193.52955 * 21 19 3 23 23 S 1.82916 * 105.08626 * 27.90777 * 22 21 19 24 24 O 1.42097 * 109.35224 * 244.47717 * 23 22 21 25 25 O 1.42099 * 109.47412 * 111.31101 * 23 22 21 26 26 C 1.55051 * 110.02746 * 119.99964 * 19 3 2 27 27 H 1.08995 * 109.47181 * 60.00421 * 1 2 3 28 28 H 1.08995 * 109.47117 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46957 * 299.99853 * 1 2 3 30 30 H 1.08998 * 109.47198 * 239.99651 * 2 1 3 31 31 H 1.09005 * 109.47249 * 119.99758 * 2 1 3 32 32 H 1.00893 * 110.99633 * 176.04555 * 8 6 4 33 33 H 1.00906 * 110.99511 * 299.99380 * 8 6 4 34 34 H 1.09004 * 109.46806 * 65.00499 * 9 6 4 35 35 H 1.09000 * 109.47828 * 305.00803 * 9 6 4 36 36 H 1.09004 * 109.47066 * 60.00422 * 10 9 6 37 37 H 1.08994 * 109.47405 * 300.00252 * 10 9 6 38 38 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 39 39 H 1.09003 * 109.64243 * 313.38437 * 21 19 3 40 40 H 1.08995 * 109.64804 * 73.67276 * 21 19 3 41 41 H 1.08997 * 110.31721 * 269.00292 * 22 21 19 42 42 H 1.09006 * 110.31533 * 146.80886 * 22 21 19 43 43 H 1.08999 * 110.78757 * 279.98891 * 26 19 3 44 44 H 1.09000 * 110.78930 * 43.45754 * 26 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1671 5 8 2.6468 3.1602 1.1671 6 6 1.9923 1.3061 2.4723 7 1 1.0819 0.7119 2.3935 8 7 1.8397 2.2957 3.5471 9 6 3.1747 0.3880 2.7884 10 6 2.8664 -0.4256 4.0469 11 6 4.0313 -1.3295 4.3586 12 1 4.9044 -1.3239 3.7229 13 6 3.9850 -2.1591 5.4590 14 7 5.0038 -2.9439 5.7341 15 14 2.4751 -2.1683 6.5588 16 1 1.5087 -3.1816 6.0643 17 1 2.8771 -2.5044 7.9484 18 1 1.8395 -0.8264 6.5382 19 6 2.2625 2.0718 -1.2688 20 1 2.0523 1.4033 -2.1038 21 6 3.7221 2.5547 -1.3336 22 6 3.8603 3.5559 -2.4977 23 16 2.2045 4.3128 -2.6739 24 8 1.6596 3.9644 -3.9391 25 8 2.2628 5.6768 -2.2798 26 6 1.3718 3.3373 -1.3645 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6069 1.8477 4.4206 33 1 2.6713 2.8596 3.6402 34 1 4.0679 0.9902 2.9548 35 1 3.3436 -0.2886 1.9507 36 1 1.9732 -1.0278 3.8805 37 1 2.6976 0.2509 4.8846 38 1 4.9711 -3.5278 6.5080 39 1 3.9883 3.0434 -0.3963 40 1 4.3825 1.7040 -1.5014 41 1 4.1378 3.0348 -3.4140 42 1 4.6011 4.3180 -2.2555 43 1 0.3572 3.0746 -1.6639 44 1 1.3692 3.8809 -0.4197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691543700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:52 Heat of formation + Delta-G solvation = -106.178017 kcal Electronic energy + Delta-G solvation = -26039.356734 eV Core-core repulsion = 22312.017736 eV Total energy + Delta-G solvation = -3727.338999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.63403 -37.30382 -37.06218 -36.23687 -35.93344 -34.67888 -32.86415 -30.73718 -30.42931 -29.62845 -27.19272 -25.37948 -24.14703 -23.06982 -21.96896 -20.37775 -19.13840 -18.95295 -17.71883 -17.18859 -16.89283 -16.61135 -16.02624 -15.70656 -15.25024 -14.93637 -14.68131 -14.46373 -14.30315 -13.97542 -13.87483 -13.50750 -13.38760 -13.11506 -12.89080 -12.76453 -12.45179 -12.36274 -12.31297 -12.22677 -11.97969 -11.87594 -11.62298 -11.43966 -11.32356 -11.00330 -10.92279 -10.62612 -10.39255 -10.15216 -9.95730 -9.42997 -9.39746 -8.93315 -8.69423 -8.42251 -6.18917 -4.19081 -0.22388 2.19840 2.59087 2.74424 3.18864 3.28123 3.28448 3.33725 3.72698 4.09007 4.16908 4.30796 4.34300 4.48367 4.57778 4.67834 4.75514 4.92917 5.01706 5.07446 5.13929 5.21458 5.31297 5.34223 5.40424 5.46181 5.47059 5.63640 5.66381 5.78829 5.99680 6.02566 6.20130 6.34430 6.53977 6.99247 7.09406 7.11334 7.35417 7.58191 7.68122 8.13057 8.36263 8.84485 9.42125 10.94172 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.003106 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.371791 B = 9011.488699 C = 9083.443055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.092 3.908 3 N -0.603 5.603 4 C 0.531 3.469 5 O -0.529 6.529 6 C 0.069 3.931 7 H 0.099 0.901 8 N -0.831 5.831 9 C -0.132 4.132 10 C -0.010 4.010 11 C -0.525 4.525 12 H 0.071 0.929 13 C 0.068 3.932 14 N -0.899 5.899 15 Si 0.881 3.119 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C 0.157 3.843 20 H 0.110 0.890 21 C -0.139 4.139 22 C -0.584 4.584 23 S 2.392 3.608 24 O -0.941 6.941 25 O -0.935 6.935 26 C -0.606 4.606 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.352 0.648 33 H 0.348 0.652 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.014 0.986 37 H 0.016 0.984 38 H 0.265 0.735 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 7.987 -15.935 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.030 4.030 3 N -0.336 5.336 4 C 0.320 3.680 5 O -0.404 6.404 6 C -0.046 4.046 7 H 0.117 0.883 8 N -0.363 5.363 9 C -0.172 4.172 10 C -0.047 4.047 11 C -0.563 4.563 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.538 5.538 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C 0.051 3.949 20 H 0.128 0.872 21 C -0.178 4.178 22 C -0.714 4.714 23 S 2.575 3.425 24 O -0.939 6.939 25 O -0.932 6.932 26 C -0.737 4.737 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.995 9.475 -16.838 20.910 hybrid contribution 0.371 -1.449 1.589 2.182 sum -7.624 8.026 -15.249 18.844 Atomic orbital electron populations 1.22251 0.95628 1.02736 1.02625 1.21913 0.94801 0.81488 1.04836 1.47857 1.66838 1.14533 1.04411 1.20873 0.75728 0.86249 0.85100 1.90574 1.44896 1.17765 1.87210 1.21607 1.00805 0.92858 0.89324 0.88271 1.58752 1.43552 1.24881 1.09097 1.22275 0.96123 0.97841 1.00954 1.19569 0.97628 0.95113 0.92420 1.21038 1.02350 1.21276 1.11664 0.91079 1.25043 0.96083 0.94949 0.97309 1.69904 1.30631 1.25073 1.28151 0.86773 0.83397 0.78920 0.80120 1.20226 1.21299 1.18988 1.21567 0.92538 0.92386 0.88419 0.87203 1.22406 0.96445 0.99800 0.99126 1.30386 1.22449 1.11318 1.07279 1.08910 0.79830 0.76866 0.76918 1.93613 1.76871 1.85249 1.38120 1.93623 1.85733 1.30179 1.83666 1.31108 1.10614 1.11581 1.20358 0.92409 0.91031 0.91965 0.89882 0.88299 0.83347 0.83795 0.91908 0.91687 0.96802 0.96560 0.92561 0.87044 0.88755 0.84580 0.84154 0.84517 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.10 37.16 0.38 -1.02 16 2 C 0.09 0.82 5.66 -4.04 -0.02 0.80 16 3 N -0.60 -6.34 2.48 -164.35 -0.41 -6.75 16 4 C 0.53 7.28 6.26 -10.99 -0.07 7.21 16 5 O -0.53 -8.28 12.36 5.55 0.07 -8.22 16 6 C 0.07 0.99 2.36 -68.87 -0.16 0.83 16 7 H 0.10 1.32 6.12 -51.93 -0.32 1.01 16 8 N -0.83 -12.31 8.94 -5.66 -0.05 -12.36 16 9 C -0.13 -2.25 4.45 -26.74 -0.12 -2.37 16 10 C -0.01 -0.21 3.81 -27.88 -0.11 -0.31 16 11 C -0.53 -13.86 9.66 -34.44 -0.33 -14.20 16 12 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 13 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16 15 Si 0.88 20.33 27.47 -169.99 -4.67 15.66 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.27 -5.77 6.54 56.52 0.37 -5.40 16 19 C 0.16 1.37 3.02 -66.39 -0.20 1.17 16 20 H 0.11 0.64 7.82 -51.93 -0.41 0.23 16 21 C -0.14 -1.21 5.74 -25.67 -0.15 -1.35 16 22 C -0.58 -4.09 7.26 37.76 0.27 -3.82 16 23 S 2.39 22.37 6.10 -107.50 -0.66 21.71 16 24 O -0.94 -11.06 18.14 -57.73 -1.05 -12.11 16 25 O -0.94 -12.59 18.15 -57.73 -1.05 -13.64 16 26 C -0.61 -5.47 6.63 38.24 0.25 -5.21 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.57 7.16 -51.93 -0.37 0.20 16 30 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 31 H 0.10 1.02 4.83 -51.93 -0.25 0.77 16 32 H 0.35 5.13 7.55 -39.30 -0.30 4.83 16 33 H 0.35 5.25 8.58 -39.29 -0.34 4.91 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.06 6.43 -51.93 -0.33 0.72 16 36 H 0.01 0.28 7.58 -51.93 -0.39 -0.11 16 37 H 0.02 0.34 5.92 -51.93 -0.31 0.03 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.11 1.25 5.78 -51.93 -0.30 0.95 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.14 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.16 1.77 6.13 -51.93 -0.32 1.45 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -35.44 353.89 -8.65 -44.09 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.59 Total: 8.54 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -0.35 Total: -16.51 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.32 Total: -44.84 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -2.03 Total: -33.97 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Atomic # 16 Polarization: 22.37 SS G_CDS: -0.66 Total: 21.71 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.44 -8.65 -44.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691543700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.091 kcal (2) G-P(sol) polarization free energy of solvation -35.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds