Wall clock time and date at job start Tue Mar 31 2020 13:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47113 * 2 1 4 4 C 1.34770 * 119.99953 * 89.99816 * 3 2 1 5 5 O 1.21284 * 119.99611 * 180.02562 * 4 3 2 6 6 C 1.50699 * 120.00651 * 0.02562 * 4 3 2 7 7 H 1.09000 * 109.46438 * 319.99712 * 6 4 3 8 8 N 1.46897 * 109.47303 * 200.00095 * 6 4 3 9 9 C 1.52994 * 109.47013 * 79.99298 * 6 4 3 10 10 C 1.52996 * 109.47119 * 185.00236 * 9 6 4 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.46504 * 119.99612 * 270.00147 * 3 2 1 20 20 H 1.09003 * 110.01337 * 358.61913 * 19 3 2 21 21 C 1.53880 * 110.02690 * 237.19214 * 19 3 2 22 22 C 1.54160 * 108.70421 * 193.52955 * 21 19 3 23 23 S 1.82916 * 105.08626 * 27.90777 * 22 21 19 24 24 O 1.42097 * 109.35224 * 244.47717 * 23 22 21 25 25 O 1.42099 * 109.47412 * 111.31101 * 23 22 21 26 26 C 1.55051 * 110.02746 * 119.99964 * 19 3 2 27 27 H 1.08995 * 109.47181 * 60.00421 * 1 2 3 28 28 H 1.08995 * 109.47117 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46957 * 299.99853 * 1 2 3 30 30 H 1.08998 * 109.47198 * 239.99651 * 2 1 3 31 31 H 1.09005 * 109.47249 * 119.99758 * 2 1 3 32 32 H 1.00893 * 110.99633 * 176.04555 * 8 6 4 33 33 H 1.00906 * 110.99511 * 299.99380 * 8 6 4 34 34 H 1.09004 * 109.46806 * 65.00499 * 9 6 4 35 35 H 1.09000 * 109.47828 * 305.00803 * 9 6 4 36 36 H 1.09004 * 109.47066 * 60.00422 * 10 9 6 37 37 H 1.08994 * 109.47405 * 300.00252 * 10 9 6 38 38 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 39 39 H 1.09003 * 109.64243 * 313.38437 * 21 19 3 40 40 H 1.08995 * 109.64804 * 73.67276 * 21 19 3 41 41 H 1.08997 * 110.31721 * 269.00292 * 22 21 19 42 42 H 1.09006 * 110.31533 * 146.80886 * 22 21 19 43 43 H 1.08999 * 110.78757 * 279.98891 * 26 19 3 44 44 H 1.09000 * 110.78930 * 43.45754 * 26 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1671 5 8 2.6468 3.1602 1.1671 6 6 1.9923 1.3061 2.4723 7 1 1.0819 0.7119 2.3935 8 7 1.8397 2.2957 3.5471 9 6 3.1747 0.3880 2.7884 10 6 2.8664 -0.4256 4.0469 11 6 4.0313 -1.3295 4.3586 12 1 4.9044 -1.3239 3.7229 13 6 3.9850 -2.1591 5.4590 14 7 5.0038 -2.9439 5.7341 15 14 2.4751 -2.1683 6.5588 16 1 1.5087 -3.1816 6.0643 17 1 2.8771 -2.5044 7.9484 18 1 1.8395 -0.8264 6.5382 19 6 2.2625 2.0718 -1.2688 20 1 2.0523 1.4033 -2.1038 21 6 3.7221 2.5547 -1.3336 22 6 3.8603 3.5559 -2.4977 23 16 2.2045 4.3128 -2.6739 24 8 1.6596 3.9644 -3.9391 25 8 2.2628 5.6768 -2.2798 26 6 1.3718 3.3373 -1.3645 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6069 1.8477 4.4206 33 1 2.6713 2.8596 3.6402 34 1 4.0679 0.9902 2.9548 35 1 3.3436 -0.2886 1.9507 36 1 1.9732 -1.0278 3.8805 37 1 2.6976 0.2509 4.8846 38 1 4.9711 -3.5278 6.5080 39 1 3.9883 3.0434 -0.3963 40 1 4.3825 1.7040 -1.5014 41 1 4.1378 3.0348 -3.4140 42 1 4.6011 4.3180 -2.2555 43 1 0.3572 3.0746 -1.6639 44 1 1.3692 3.8809 -0.4197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691543700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:51 Heat of formation + Delta-G solvation = -135.076204 kcal Electronic energy + Delta-G solvation = -26040.609854 eV Core-core repulsion = 22312.017736 eV Total energy + Delta-G solvation = -3728.592118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.58671 -38.19073 -37.99998 -37.12697 -37.08933 -35.57332 -34.71529 -32.07765 -31.41702 -30.39225 -28.52580 -26.45251 -25.18557 -24.04185 -22.84085 -21.89125 -20.05496 -19.83817 -18.97349 -18.45810 -17.98062 -17.45694 -16.93308 -16.55021 -16.37002 -16.15844 -15.83201 -15.64448 -15.41838 -14.86600 -14.75469 -14.66895 -14.56270 -14.51328 -13.79978 -13.77980 -13.51175 -13.30684 -13.19505 -13.12755 -13.05126 -12.82441 -12.77521 -12.51158 -12.28486 -12.09575 -11.97504 -11.82365 -11.73944 -11.54882 -11.38540 -11.32655 -10.76298 -10.53766 -9.78667 -9.62983 -8.29049 -6.34134 -0.95448 1.38167 1.40922 1.44926 1.51104 1.58055 1.92755 2.36509 2.61675 2.99973 3.06909 3.33061 3.44506 3.66883 3.73402 3.74500 3.93027 3.99454 4.07505 4.11393 4.18736 4.37997 4.44207 4.52837 4.63399 4.70554 4.72529 4.80142 4.82244 4.94815 4.98221 5.04152 5.10328 5.36348 5.43121 5.46910 5.59065 5.63585 6.04061 6.25735 6.32647 6.47890 6.74606 7.13311 7.30896 8.87506 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.003106 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.371791 B = 9011.488699 C = 9083.443055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.085 3.915 3 N -0.594 5.594 4 C 0.527 3.473 5 O -0.554 6.554 6 C 0.076 3.924 7 H 0.115 0.885 8 N -0.832 5.832 9 C -0.120 4.120 10 C -0.006 4.006 11 C -0.531 4.531 12 H 0.029 0.971 13 C 0.004 3.996 14 N -0.952 5.952 15 Si 0.950 3.050 16 H -0.264 1.264 17 H -0.292 1.292 18 H -0.240 1.240 19 C 0.147 3.853 20 H 0.151 0.849 21 C -0.142 4.142 22 C -0.561 4.561 23 S 2.402 3.598 24 O -0.965 6.965 25 O -0.984 6.984 26 C -0.601 4.601 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.353 0.647 33 H 0.345 0.655 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.022 0.978 38 H 0.265 0.735 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.168 0.832 42 H 0.148 0.852 43 H 0.157 0.843 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.182 7.426 -17.172 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.037 4.037 3 N -0.327 5.327 4 C 0.315 3.685 5 O -0.432 6.432 6 C -0.039 4.039 7 H 0.133 0.867 8 N -0.364 5.364 9 C -0.160 4.160 10 C -0.043 4.043 11 C -0.569 4.569 12 H 0.047 0.953 13 C -0.193 4.193 14 N -0.593 5.593 15 Si 0.773 3.227 16 H -0.189 1.189 17 H -0.218 1.218 18 H -0.163 1.163 19 C 0.042 3.958 20 H 0.168 0.832 21 C -0.181 4.181 22 C -0.694 4.694 23 S 2.589 3.411 24 O -0.962 6.962 25 O -0.981 6.981 26 C -0.732 4.732 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.129 0.871 41 H 0.186 0.814 42 H 0.166 0.834 43 H 0.175 0.825 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.882 8.934 -18.121 22.492 hybrid contribution 1.053 -1.326 1.920 2.560 sum -8.830 7.609 -16.201 19.958 Atomic orbital electron populations 1.22231 0.94710 1.03532 1.02485 1.22114 0.95552 0.80401 1.05587 1.47859 1.65649 1.15030 1.04115 1.20719 0.75966 0.86012 0.85783 1.90579 1.46128 1.18834 1.87654 1.21538 0.99972 0.92443 0.89959 0.86733 1.58773 1.43341 1.24900 1.09357 1.22073 0.96625 0.97740 0.99513 1.19496 0.95767 0.94733 0.94343 1.21419 1.02769 1.21936 1.10768 0.95284 1.26040 0.99526 0.94564 0.99193 1.70074 1.33390 1.26610 1.29205 0.85664 0.79312 0.80403 0.77293 1.18870 1.21822 1.16316 1.21945 0.92360 0.92856 0.88618 0.83170 1.22409 0.96887 1.00464 0.98354 1.30253 1.19936 1.11029 1.08179 1.08432 0.80637 0.75880 0.76135 1.93575 1.78037 1.85323 1.39305 1.93559 1.86783 1.33592 1.84214 1.31012 1.12003 1.11410 1.18782 0.91265 0.89783 0.93403 0.86918 0.89851 0.83204 0.84137 0.93886 0.91051 0.95215 0.96005 0.92586 0.89822 0.87056 0.81376 0.83353 0.82510 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.10 71.98 0.73 -1.45 16 2 C 0.09 1.24 5.66 86.38 0.49 1.73 16 3 N -0.59 -11.07 2.48 -792.28 -1.97 -13.04 16 4 C 0.53 13.80 6.26 87.66 0.55 14.35 16 5 O -0.55 -17.24 12.36 -3.04 -0.04 -17.28 16 6 C 0.08 2.08 2.36 44.17 0.10 2.19 16 7 H 0.11 2.79 6.12 -2.39 -0.01 2.78 16 8 N -0.83 -23.78 8.94 -171.81 -1.54 -25.32 16 9 C -0.12 -4.00 4.45 30.59 0.14 -3.86 16 10 C -0.01 -0.24 3.81 29.85 0.11 -0.13 16 11 C -0.53 -28.40 9.66 25.60 0.25 -28.15 16 12 H 0.03 1.74 7.99 -2.91 -0.02 1.71 16 13 C 0.00 0.20 5.47 84.66 0.46 0.66 16 14 N -0.95 -57.58 13.96 21.45 0.30 -57.29 16 15 Si 0.95 41.16 27.47 68.60 1.88 43.05 16 16 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.24 -9.33 6.54 99.48 0.65 -8.68 16 19 C 0.15 2.13 3.02 45.99 0.14 2.27 16 20 H 0.15 1.00 7.82 -2.39 -0.02 0.99 16 21 C -0.14 -2.13 5.74 31.28 0.18 -1.96 16 22 C -0.56 -6.44 7.26 72.37 0.53 -5.91 16 23 S 2.40 42.23 6.10 -56.49 -0.34 41.88 16 24 O -0.97 -21.15 18.14 -127.47 -2.31 -23.47 16 25 O -0.98 -26.90 18.15 -127.47 -2.31 -29.21 16 26 C -0.60 -9.84 6.63 72.68 0.48 -9.36 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.75 7.16 -2.39 -0.02 0.73 16 30 H 0.11 1.01 7.92 -2.39 -0.02 0.99 16 31 H 0.08 1.51 4.83 -2.38 -0.01 1.50 16 32 H 0.35 9.71 7.55 -89.70 -0.68 9.03 16 33 H 0.35 10.32 8.58 -89.69 -0.77 9.55 16 34 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.07 2.27 6.43 -2.39 -0.02 2.25 16 36 H 0.03 1.13 7.58 -2.38 -0.02 1.11 16 37 H 0.02 0.87 5.92 -2.39 -0.01 0.85 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.25 16 39 H 0.08 1.81 5.78 -2.39 -0.01 1.80 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.17 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.15 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.16 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.13 2.99 6.13 -2.39 -0.01 2.98 16 Total: -1.00 -79.32 353.89 -2.64 -81.95 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.47 Total: 28.34 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 4.16 Total: -29.62 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -3.20 Total: -95.64 kcal Atomic # 8 Polarization: -65.29 SS G_CDS: -4.66 Total: -69.96 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.88 Total: 43.05 kcal Atomic # 16 Polarization: 42.23 SS G_CDS: -0.34 Total: 41.88 kcal Total: -79.32 -2.64 -81.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691543700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.121 kcal (2) G-P(sol) polarization free energy of solvation -79.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds