Wall clock time and date at job start Tue Mar 31 2020 13:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46499 * 109.47595 * 2 1 4 4 C 1.34771 * 120.00203 * 94.68221 * 3 2 1 5 5 O 1.21283 * 120.00120 * 184.92206 * 4 3 2 6 6 C 1.50702 * 119.99992 * 4.91666 * 4 3 2 7 7 H 1.09000 * 109.46955 * 27.82868 * 6 4 3 8 8 N 1.46901 * 109.46926 * 147.82111 * 6 4 3 9 9 C 1.52995 * 109.47415 * 267.82533 * 6 4 3 10 10 C 1.52997 * 109.47096 * 176.45385 * 9 6 4 11 11 C 1.50699 * 109.47004 * 180.02562 * 10 9 6 12 12 H 1.07997 * 120.00431 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00245 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99724 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00490 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46650 * 60.00248 * 15 13 11 17 17 H 1.48499 * 109.47176 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.46965 * 300.00161 * 15 13 11 19 19 C 1.46509 * 120.00027 * 274.68614 * 3 2 1 20 20 H 1.08997 * 110.01066 * 358.61590 * 19 3 2 21 21 C 1.53871 * 110.02544 * 237.19018 * 19 3 2 22 22 C 1.54162 * 108.70467 * 193.52788 * 21 19 3 23 23 S 1.82920 * 105.08627 * 27.90492 * 22 21 19 24 24 O 1.42099 * 109.35607 * 244.48136 * 23 22 21 25 25 O 1.42102 * 109.47596 * 111.30926 * 23 22 21 26 26 C 1.55040 * 110.02587 * 119.99550 * 19 3 2 27 27 H 1.09007 * 109.46790 * 53.27126 * 1 2 3 28 28 H 1.08999 * 109.47437 * 173.26974 * 1 2 3 29 29 H 1.08996 * 109.47026 * 293.27549 * 1 2 3 30 30 H 1.09007 * 109.47664 * 239.99816 * 2 1 3 31 31 H 1.09003 * 109.47186 * 120.00206 * 2 1 3 32 32 H 1.00897 * 111.00132 * 60.00837 * 8 6 4 33 33 H 1.00903 * 110.99754 * 183.95603 * 8 6 4 34 34 H 1.09008 * 109.47171 * 296.45079 * 9 6 4 35 35 H 1.09001 * 109.47492 * 56.44962 * 9 6 4 36 36 H 1.08998 * 109.47303 * 299.99564 * 10 9 6 37 37 H 1.09003 * 109.47508 * 60.00199 * 10 9 6 38 38 H 0.97002 * 120.00184 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.65042 * 313.37631 * 21 19 3 40 40 H 1.09000 * 109.65190 * 73.67341 * 21 19 3 41 41 H 1.09004 * 110.31800 * 269.00829 * 22 21 19 42 42 H 1.09000 * 110.32437 * 146.80886 * 22 21 19 43 43 H 1.09004 * 110.79132 * 279.99240 * 26 19 3 44 44 H 1.09000 * 110.79604 * 43.27159 * 26 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3329 1.9847 1.1632 5 8 2.6516 3.1549 1.1725 6 6 2.2884 1.2057 2.4525 7 1 2.4767 0.1519 2.2469 8 7 3.3162 1.7169 3.3692 9 6 0.9087 1.3613 3.0952 10 6 0.8341 0.5001 4.3575 11 6 -0.5251 0.6530 4.9902 12 1 -1.2619 1.2999 4.5375 13 6 -0.8282 -0.0332 6.1471 14 7 0.0688 -0.8214 6.6982 15 14 -2.5127 0.1568 6.9318 16 1 -3.5581 -0.2798 5.9715 17 1 -2.5856 -0.6801 8.1563 18 1 -2.7338 1.5806 7.2908 19 6 2.1649 2.1064 -1.2646 20 1 1.8904 1.4607 -2.0987 21 6 3.6156 2.5923 -1.4283 22 6 3.6650 3.6250 -2.5718 23 16 2.0013 4.3848 -2.5994 24 8 1.3603 4.0704 -3.8280 25 8 2.0912 5.7376 -2.1739 26 6 1.2709 3.3730 -1.2568 27 1 -0.3633 0.6146 -0.8237 28 1 -0.3634 -1.0205 -0.1204 29 1 -0.3633 0.4061 0.9440 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.1636 2.6927 3.5755 33 1 3.3500 1.1693 4.2160 34 1 0.7463 2.4066 3.3583 35 1 0.1414 1.0406 2.3906 36 1 0.9965 -0.5451 4.0945 37 1 1.6014 0.8210 5.0622 38 1 -0.1445 -1.3045 7.5119 39 1 3.9538 3.0557 -0.5013 40 1 4.2603 1.7472 -1.6696 41 1 3.8705 3.1294 -3.5207 42 1 4.4230 4.3810 -2.3668 43 1 0.2359 3.1176 -1.4843 44 1 1.3389 3.8889 -0.2991 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691543701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:56 Heat of formation + Delta-G solvation = -106.972527 kcal Electronic energy + Delta-G solvation = -26034.030643 eV Core-core repulsion = 22306.657192 eV Total energy + Delta-G solvation = -3727.373451 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.56455 -37.26938 -37.01443 -36.20245 -35.78457 -34.61259 -32.88861 -30.67057 -29.98838 -29.57982 -26.92210 -25.27376 -23.97756 -23.29688 -22.03512 -20.47680 -19.06828 -18.70907 -17.75093 -17.15030 -16.67850 -16.36159 -16.02692 -15.68154 -15.06063 -14.89483 -14.70230 -14.54344 -14.32674 -14.03034 -13.74245 -13.33846 -13.12271 -13.05351 -12.90452 -12.41178 -12.34341 -12.30230 -12.22437 -12.14140 -11.97674 -11.83333 -11.55408 -11.21568 -11.05481 -10.97717 -10.81362 -10.71859 -10.60490 -9.97094 -9.84964 -9.34052 -9.27276 -8.88353 -8.48731 -8.29873 -6.13620 -4.16924 -0.19417 2.23521 2.64769 2.79937 3.25039 3.30247 3.32612 3.36956 3.75509 4.12874 4.19397 4.34454 4.35868 4.51506 4.58116 4.76253 4.76980 5.00674 5.10833 5.17666 5.22829 5.23486 5.32434 5.39353 5.49228 5.53709 5.64102 5.74988 5.78057 5.81169 6.01701 6.34049 6.36904 6.51233 6.83135 7.17760 7.43398 7.45797 7.55619 7.79223 7.83224 8.18718 8.25594 8.88630 9.48370 10.97168 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.003128 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.824713 B = 8948.127787 C = 9148.350900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.533 3.467 5 O -0.533 6.533 6 C 0.072 3.928 7 H 0.098 0.902 8 N -0.833 5.833 9 C -0.142 4.142 10 C 0.026 3.974 11 C -0.525 4.525 12 H 0.054 0.946 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.157 3.843 20 H 0.109 0.891 21 C -0.135 4.135 22 C -0.585 4.585 23 S 2.392 3.608 24 O -0.942 6.942 25 O -0.935 6.935 26 C -0.608 4.608 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.347 0.653 33 H 0.356 0.644 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.018 0.982 37 H 0.017 0.983 38 H 0.262 0.738 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 1.791 -18.413 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.322 3.678 5 O -0.409 6.409 6 C -0.043 4.043 7 H 0.115 0.885 8 N -0.365 5.365 9 C -0.182 4.182 10 C -0.011 4.011 11 C -0.563 4.563 12 H 0.072 0.928 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.051 3.949 20 H 0.127 0.873 21 C -0.174 4.174 22 C -0.715 4.715 23 S 2.574 3.426 24 O -0.939 6.939 25 O -0.932 6.932 26 C -0.738 4.738 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.160 0.840 33 H 0.172 0.828 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.048 2.837 -19.385 20.821 hybrid contribution -1.536 -0.543 1.613 2.293 sum 5.513 2.293 -17.772 18.748 Atomic orbital electron populations 1.22386 0.95287 1.02758 1.03530 1.21802 0.95162 0.81428 1.03928 1.47894 1.66488 1.14467 1.04889 1.20971 0.74481 0.87463 0.84872 1.90564 1.47191 1.16467 1.86644 1.21605 0.93854 0.98588 0.90212 0.88475 1.58832 1.48702 1.08733 1.20276 1.22501 0.93460 1.01922 1.00273 1.19076 0.97387 0.94270 0.90331 1.21118 0.98936 1.27151 1.09105 0.92806 1.24998 0.97107 0.95101 0.96988 1.69931 1.34119 1.28734 1.20376 0.86651 0.84396 0.78198 0.78740 1.20209 1.21195 1.20200 1.21538 0.92881 0.91995 0.88515 0.87265 1.22343 0.96888 0.99173 0.98979 1.30391 1.22931 1.11132 1.07082 1.08921 0.79558 0.76970 0.77108 1.93612 1.73400 1.85789 1.41056 1.93624 1.85753 1.30973 1.82822 1.31152 1.10041 1.11786 1.20847 0.92527 0.91112 0.90743 0.90379 0.88780 0.83996 0.82845 0.92545 0.91972 0.96392 0.96455 0.92790 0.87299 0.88923 0.84635 0.84199 0.84455 0.82202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 10.24 37.15 0.38 -1.40 16 2 C 0.10 0.91 6.04 -4.05 -0.02 0.88 16 3 N -0.60 -6.59 2.48 -164.37 -0.41 -7.00 16 4 C 0.53 7.64 6.15 -10.99 -0.07 7.57 16 5 O -0.53 -8.70 12.52 5.55 0.07 -8.64 16 6 C 0.07 1.11 2.62 -68.87 -0.18 0.93 16 7 H 0.10 1.39 5.83 -51.93 -0.30 1.09 16 8 N -0.83 -13.11 9.03 -5.65 -0.05 -13.16 16 9 C -0.14 -2.62 4.79 -26.74 -0.13 -2.75 16 10 C 0.03 0.61 4.71 -27.89 -0.13 0.48 16 11 C -0.52 -13.93 9.11 -34.44 -0.31 -14.25 16 12 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 15 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.16 1.41 3.02 -66.39 -0.20 1.20 16 20 H 0.11 0.65 7.88 -51.93 -0.41 0.24 16 21 C -0.13 -1.13 5.74 -25.67 -0.15 -1.28 16 22 C -0.59 -4.02 7.26 37.76 0.27 -3.75 16 23 S 2.39 23.30 6.10 -107.50 -0.66 22.64 16 24 O -0.94 -11.42 18.15 -57.73 -1.05 -12.47 16 25 O -0.93 -13.02 18.15 -57.73 -1.05 -14.06 16 26 C -0.61 -5.97 6.63 38.24 0.25 -5.72 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.93 5.35 -51.93 -0.28 0.65 16 30 H 0.08 0.50 8.02 -51.93 -0.42 0.08 16 31 H 0.09 0.92 5.53 -51.93 -0.29 0.63 16 32 H 0.35 5.60 8.55 -39.29 -0.34 5.27 16 33 H 0.36 5.72 7.50 -39.29 -0.29 5.42 16 34 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 35 H 0.06 1.10 5.35 -51.93 -0.28 0.82 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.42 6.83 -51.93 -0.35 0.06 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.11 1.20 5.95 -51.93 -0.31 0.89 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.16 1.96 5.96 -51.93 -0.31 1.66 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -34.80 356.29 -8.94 -43.74 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.50 Total: 8.88 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -0.38 Total: -16.54 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.28 Total: -44.75 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -2.03 Total: -35.17 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 23.30 SS G_CDS: -0.66 Total: 22.64 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.80 -8.94 -43.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691543701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.237 kcal (2) G-P(sol) polarization free energy of solvation -34.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds