Wall clock time and date at job start Tue Mar 31 2020 13:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46499 * 109.47595 * 2 1 4 4 C 1.34771 * 120.00203 * 94.68221 * 3 2 1 5 5 O 1.21283 * 120.00120 * 184.92206 * 4 3 2 6 6 C 1.50702 * 119.99992 * 4.91666 * 4 3 2 7 7 H 1.09000 * 109.46955 * 27.82868 * 6 4 3 8 8 N 1.46901 * 109.46926 * 147.82111 * 6 4 3 9 9 C 1.52995 * 109.47415 * 267.82533 * 6 4 3 10 10 C 1.52997 * 109.47096 * 176.45385 * 9 6 4 11 11 C 1.50699 * 109.47004 * 180.02562 * 10 9 6 12 12 H 1.07997 * 120.00431 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00245 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99724 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00490 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46650 * 60.00248 * 15 13 11 17 17 H 1.48499 * 109.47176 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.46965 * 300.00161 * 15 13 11 19 19 C 1.46509 * 120.00027 * 274.68614 * 3 2 1 20 20 H 1.08997 * 110.01066 * 358.61590 * 19 3 2 21 21 C 1.53871 * 110.02544 * 237.19018 * 19 3 2 22 22 C 1.54162 * 108.70467 * 193.52788 * 21 19 3 23 23 S 1.82920 * 105.08627 * 27.90492 * 22 21 19 24 24 O 1.42099 * 109.35607 * 244.48136 * 23 22 21 25 25 O 1.42102 * 109.47596 * 111.30926 * 23 22 21 26 26 C 1.55040 * 110.02587 * 119.99550 * 19 3 2 27 27 H 1.09007 * 109.46790 * 53.27126 * 1 2 3 28 28 H 1.08999 * 109.47437 * 173.26974 * 1 2 3 29 29 H 1.08996 * 109.47026 * 293.27549 * 1 2 3 30 30 H 1.09007 * 109.47664 * 239.99816 * 2 1 3 31 31 H 1.09003 * 109.47186 * 120.00206 * 2 1 3 32 32 H 1.00897 * 111.00132 * 60.00837 * 8 6 4 33 33 H 1.00903 * 110.99754 * 183.95603 * 8 6 4 34 34 H 1.09008 * 109.47171 * 296.45079 * 9 6 4 35 35 H 1.09001 * 109.47492 * 56.44962 * 9 6 4 36 36 H 1.08998 * 109.47303 * 299.99564 * 10 9 6 37 37 H 1.09003 * 109.47508 * 60.00199 * 10 9 6 38 38 H 0.97002 * 120.00184 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.65042 * 313.37631 * 21 19 3 40 40 H 1.09000 * 109.65190 * 73.67341 * 21 19 3 41 41 H 1.09004 * 110.31800 * 269.00829 * 22 21 19 42 42 H 1.09000 * 110.32437 * 146.80886 * 22 21 19 43 43 H 1.09004 * 110.79132 * 279.99240 * 26 19 3 44 44 H 1.09000 * 110.79604 * 43.27159 * 26 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3329 1.9847 1.1632 5 8 2.6516 3.1549 1.1725 6 6 2.2884 1.2057 2.4525 7 1 2.4767 0.1519 2.2469 8 7 3.3162 1.7169 3.3692 9 6 0.9087 1.3613 3.0952 10 6 0.8341 0.5001 4.3575 11 6 -0.5251 0.6530 4.9902 12 1 -1.2619 1.2999 4.5375 13 6 -0.8282 -0.0332 6.1471 14 7 0.0688 -0.8214 6.6982 15 14 -2.5127 0.1568 6.9318 16 1 -3.5581 -0.2798 5.9715 17 1 -2.5856 -0.6801 8.1563 18 1 -2.7338 1.5806 7.2908 19 6 2.1649 2.1064 -1.2646 20 1 1.8904 1.4607 -2.0987 21 6 3.6156 2.5923 -1.4283 22 6 3.6650 3.6250 -2.5718 23 16 2.0013 4.3848 -2.5994 24 8 1.3603 4.0704 -3.8280 25 8 2.0912 5.7376 -2.1739 26 6 1.2709 3.3730 -1.2568 27 1 -0.3633 0.6146 -0.8237 28 1 -0.3634 -1.0205 -0.1204 29 1 -0.3633 0.4061 0.9440 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.1636 2.6927 3.5755 33 1 3.3500 1.1693 4.2160 34 1 0.7463 2.4066 3.3583 35 1 0.1414 1.0406 2.3906 36 1 0.9965 -0.5451 4.0945 37 1 1.6014 0.8210 5.0622 38 1 -0.1445 -1.3045 7.5119 39 1 3.9538 3.0557 -0.5013 40 1 4.2603 1.7472 -1.6696 41 1 3.8705 3.1294 -3.5207 42 1 4.4230 4.3810 -2.3668 43 1 0.2359 3.1176 -1.4843 44 1 1.3389 3.8889 -0.2991 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691543701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:55 Heat of formation + Delta-G solvation = -134.606747 kcal Electronic energy + Delta-G solvation = -26035.228952 eV Core-core repulsion = 22306.657192 eV Total energy + Delta-G solvation = -3728.571761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.57378 -38.18691 -37.99213 -37.10461 -37.04750 -35.57073 -34.73536 -31.72063 -31.38268 -30.40018 -28.34364 -26.43199 -25.23910 -24.16846 -23.08448 -21.91808 -19.89927 -19.78981 -18.77547 -18.31829 -17.98547 -17.43870 -16.99098 -16.55395 -16.50057 -16.16366 -15.86005 -15.59524 -15.40409 -15.03655 -14.72632 -14.52889 -14.50540 -13.99167 -13.79311 -13.75938 -13.52035 -13.29660 -13.15593 -13.10424 -13.02360 -12.84811 -12.81712 -12.57535 -12.42086 -12.26850 -12.13669 -11.77506 -11.59461 -11.40270 -11.32299 -11.30468 -10.55461 -10.51808 -9.79701 -9.62550 -8.22024 -6.31902 -0.94747 1.38999 1.40128 1.45542 1.48340 1.58265 1.92647 2.39052 2.62959 3.00695 3.11742 3.34787 3.45551 3.69388 3.75728 3.77350 3.90436 3.97522 4.01556 4.19678 4.28528 4.37018 4.44600 4.52776 4.69035 4.69714 4.81469 4.83512 4.84954 4.98189 5.05496 5.07841 5.11642 5.39117 5.52530 5.60581 5.67248 5.81971 6.04858 6.21092 6.31332 6.45508 6.83019 7.12838 7.37111 8.88323 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.003128 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.824713 B = 8948.127787 C = 9148.350900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.530 3.470 5 O -0.557 6.557 6 C 0.076 3.924 7 H 0.112 0.888 8 N -0.830 5.830 9 C -0.127 4.127 10 C 0.034 3.966 11 C -0.545 4.545 12 H 0.051 0.949 13 C 0.009 3.991 14 N -0.924 5.924 15 Si 0.954 3.046 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.274 1.274 19 C 0.147 3.853 20 H 0.153 0.847 21 C -0.136 4.136 22 C -0.556 4.556 23 S 2.399 3.601 24 O -0.966 6.966 25 O -0.986 6.986 26 C -0.610 4.610 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.343 0.657 33 H 0.352 0.648 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.004 0.996 37 H 0.000 1.000 38 H 0.264 0.736 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.172 0.828 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.951 0.477 -20.546 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.028 4.028 3 N -0.326 5.326 4 C 0.319 3.681 5 O -0.436 6.436 6 C -0.039 4.039 7 H 0.130 0.870 8 N -0.361 5.361 9 C -0.166 4.166 10 C -0.003 4.003 11 C -0.583 4.583 12 H 0.069 0.931 13 C -0.190 4.190 14 N -0.564 5.564 15 Si 0.780 3.220 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.199 1.199 19 C 0.042 3.958 20 H 0.170 0.830 21 C -0.175 4.175 22 C -0.689 4.689 23 S 2.586 3.414 24 O -0.963 6.963 25 O -0.983 6.983 26 C -0.741 4.741 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.104 0.896 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.022 0.978 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.139 0.861 41 H 0.190 0.810 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.264 1.531 -21.553 22.796 hybrid contribution -1.583 -0.187 2.261 2.767 sum 5.681 1.344 -19.292 20.156 Atomic orbital electron populations 1.22369 0.95820 1.03602 1.02092 1.22033 0.94674 0.80451 1.05659 1.47869 1.65024 1.15127 1.04553 1.20664 0.74981 0.86958 0.85487 1.90570 1.48548 1.17342 1.87115 1.21557 0.91596 0.99852 0.90894 0.87048 1.58857 1.48639 1.08433 1.20159 1.22252 0.96124 0.99592 0.98669 1.18921 0.95398 0.94167 0.91830 1.21564 1.00338 1.26874 1.09525 0.93066 1.25802 1.00718 0.94855 0.97615 1.70038 1.35937 1.29607 1.20837 0.85663 0.80214 0.78180 0.77984 1.19216 1.20737 1.19893 1.21967 0.93155 0.92088 0.88562 0.82958 1.22354 0.96788 1.00187 0.98153 1.30227 1.19447 1.10783 1.08486 1.08519 0.80736 0.75991 0.76121 1.93573 1.74973 1.85862 1.41909 1.93556 1.86923 1.34490 1.83379 1.31090 1.11395 1.12269 1.19337 0.91403 0.89740 0.94047 0.86161 0.89566 0.84420 0.83307 0.94368 0.91092 0.97750 0.98122 0.92711 0.90112 0.86136 0.80988 0.83122 0.83187 0.84897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 10.24 71.98 0.74 -2.39 16 2 C 0.09 1.41 6.04 86.38 0.52 1.94 16 3 N -0.59 -11.57 2.48 -792.32 -1.97 -13.53 16 4 C 0.53 14.85 6.15 87.66 0.54 15.39 16 5 O -0.56 -18.36 12.52 -3.04 -0.04 -18.40 16 6 C 0.08 2.33 2.62 44.17 0.12 2.45 16 7 H 0.11 3.10 5.83 -2.39 -0.01 3.09 16 8 N -0.83 -26.54 9.03 -171.80 -1.55 -28.09 16 9 C -0.13 -4.78 4.79 30.59 0.15 -4.63 16 10 C 0.03 1.61 4.71 29.85 0.14 1.76 16 11 C -0.55 -29.41 9.11 25.60 0.23 -29.18 16 12 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 13 C 0.01 0.49 5.46 84.65 0.46 0.95 16 14 N -0.92 -53.14 13.29 21.45 0.28 -52.85 16 15 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 19 C 0.15 2.17 3.02 45.98 0.14 2.31 16 20 H 0.15 0.99 7.88 -2.39 -0.02 0.97 16 21 C -0.14 -1.82 5.74 31.28 0.18 -1.64 16 22 C -0.56 -5.75 7.26 72.38 0.53 -5.23 16 23 S 2.40 44.17 6.10 -56.49 -0.34 43.82 16 24 O -0.97 -21.96 18.15 -127.47 -2.31 -24.28 16 25 O -0.99 -28.10 18.15 -127.47 -2.31 -30.41 16 26 C -0.61 -11.32 6.63 72.68 0.48 -10.84 16 27 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 0.99 5.35 -2.39 -0.01 0.98 16 30 H 0.12 0.89 8.02 -2.38 -0.02 0.87 16 31 H 0.09 1.48 5.53 -2.39 -0.01 1.46 16 32 H 0.34 11.44 8.55 -89.70 -0.77 10.68 16 33 H 0.35 11.64 7.50 -89.69 -0.67 10.97 16 34 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.07 2.54 5.35 -2.39 -0.01 2.53 16 36 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.00 0.03 6.83 -2.39 -0.02 0.01 16 38 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.08 1.64 5.95 -2.39 -0.01 1.63 16 40 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.17 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.15 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.13 3.35 5.96 -2.39 -0.01 3.33 16 Total: -1.00 -77.42 356.29 -2.40 -79.81 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.40 Total: 28.19 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 4.22 Total: -29.12 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -3.23 Total: -94.47 kcal Atomic # 8 Polarization: -68.42 SS G_CDS: -4.66 Total: -73.09 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 44.17 SS G_CDS: -0.34 Total: 43.82 kcal Total: -77.42 -2.40 -79.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691543701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.794 kcal (2) G-P(sol) polarization free energy of solvation -77.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds