Wall clock time and date at job start Tue Mar 31 2020 13:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.46866 * 2 1 4 4 C 1.37092 * 119.99690 * 263.70019 * 3 2 1 5 5 H 1.08007 * 119.99647 * 194.47375 * 4 3 2 6 6 C 1.38942 * 120.00411 * 14.47554 * 4 3 2 7 7 N 1.31407 * 120.00042 * 19.51916 * 6 4 3 8 8 Si 1.86804 * 120.00228 * 199.52119 * 6 4 3 9 9 H 1.48500 * 109.47253 * 89.99792 * 8 6 4 10 10 H 1.48500 * 109.47359 * 209.99730 * 8 6 4 11 11 H 1.48498 * 109.46955 * 329.99895 * 8 6 4 12 12 C 1.34782 * 120.00033 * 83.70111 * 3 2 1 13 13 O 1.21292 * 119.99721 * 355.48690 * 12 3 2 14 14 C 1.50695 * 119.99763 * 175.48382 * 12 3 2 15 15 H 1.08999 * 109.58146 * 49.28673 * 14 12 3 16 16 C 1.53141 * 109.63849 * 289.05337 * 14 12 3 17 17 N 1.47297 * 107.79189 * 182.19694 * 16 14 12 18 18 C 1.34775 * 121.15889 * 221.84180 * 17 16 14 19 19 C 1.50700 * 120.00207 * 4.26621 * 18 17 16 20 20 O 1.21300 * 120.00282 * 184.53752 * 18 17 16 21 21 C 1.40558 * 117.68511 * 41.57368 * 17 16 14 22 22 C 1.38569 * 120.09319 * 166.53531 * 21 17 16 23 23 C 1.38263 * 119.87932 * 179.83491 * 22 21 17 24 24 C 1.38284 * 120.05645 * 0.02562 * 23 22 21 25 25 C 1.38202 * 120.29752 * 0.04871 * 24 23 22 26 26 C 1.38708 * 120.04952 * 359.97438 * 25 24 23 27 27 O 1.35905 * 119.66378 * 179.66288 * 26 25 24 28 28 H 1.09000 * 109.47143 * 299.53498 * 1 2 3 29 29 H 1.09004 * 109.47029 * 59.53709 * 1 2 3 30 30 H 1.08997 * 109.46570 * 179.53511 * 1 2 3 31 31 H 1.08995 * 109.47275 * 240.00173 * 2 1 3 32 32 H 1.09007 * 109.46749 * 119.99642 * 2 1 3 33 33 H 0.97006 * 120.00457 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.80679 * 62.57177 * 16 14 12 35 35 H 1.08993 * 109.65785 * 301.74131 * 16 14 12 36 36 H 1.08995 * 109.47713 * 176.40605 * 19 18 17 37 37 H 1.09003 * 109.46838 * 296.40381 * 19 18 17 38 38 H 1.09000 * 109.46864 * 56.39570 * 19 18 17 39 39 H 1.07999 * 120.06800 * 359.81321 * 22 21 17 40 40 H 1.07993 * 119.97498 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.85075 * 180.02562 * 24 23 22 42 42 H 1.07990 * 119.97849 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3696 1.9840 -1.1801 5 1 2.9417 2.9001 -1.1692 6 6 1.9898 1.4166 -2.3902 7 7 1.0009 0.5520 -2.4287 8 14 2.8847 1.8827 -3.9622 9 1 4.0289 0.9597 -4.1727 10 1 1.9503 1.7829 -5.1120 11 1 3.3866 3.2759 -3.8516 12 6 2.1222 2.0593 1.1602 13 8 1.7351 1.5559 2.1936 14 6 2.7194 3.4428 1.1734 15 1 2.2515 4.0501 0.3986 16 6 4.2263 3.3555 0.9148 17 7 4.7756 4.7202 0.9891 18 6 5.6966 5.1503 0.1042 19 6 6.1114 4.2646 -1.0423 20 8 6.1954 6.2485 0.2334 21 6 4.3015 5.5601 2.0116 22 6 4.9675 6.7388 2.3072 23 6 4.4953 7.5634 3.3116 24 6 3.3609 7.2122 4.0201 25 6 2.6938 6.0371 3.7303 26 6 3.1604 5.2034 2.7247 27 8 2.5023 4.0462 2.4509 28 1 -0.3633 0.5066 0.8941 29 1 -0.3633 0.5210 -0.8858 30 1 -0.3632 -1.0276 -0.0083 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 0.7359 0.1555 -3.2735 34 1 4.4075 2.9373 -0.0754 35 1 4.6927 2.7272 1.6735 36 1 6.8109 4.8023 -1.6823 37 1 6.5916 3.3670 -0.6527 38 1 5.2315 3.9838 -1.6211 39 1 5.8539 7.0127 1.7545 40 1 5.0134 8.4821 3.5436 41 1 2.9948 7.8590 4.8036 42 1 1.8081 5.7681 4.2865 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743892777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:32 Heat of formation + Delta-G solvation = -42.447153 kcal Electronic energy + Delta-G solvation = -27938.815368 eV Core-core repulsion = 24078.795995 eV Total energy + Delta-G solvation = -3860.019372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.29706 -39.23271 -38.59574 -37.06580 -35.44431 -35.08009 -31.85021 -31.48001 -30.96746 -29.80078 -29.19104 -27.63382 -25.27455 -24.51557 -23.18494 -22.26480 -21.14925 -19.57268 -19.31445 -18.18446 -17.50775 -17.40330 -16.41792 -15.95463 -15.58859 -15.51593 -14.99784 -14.69110 -14.44760 -14.16305 -13.86231 -13.83171 -13.42581 -13.28749 -12.99856 -12.82536 -12.58668 -12.39542 -12.16102 -12.01448 -11.71090 -11.63311 -11.43769 -11.27295 -11.18422 -11.02702 -10.72704 -10.60111 -10.40367 -10.06240 -9.85892 -9.38615 -9.15622 -8.61006 -8.30887 -8.00608 -7.64106 -6.59949 -4.19821 1.38014 1.58345 2.57618 2.67992 2.90976 3.00963 3.05292 3.24359 3.56429 3.86004 3.97725 4.39986 4.58869 4.70123 4.86751 4.99352 5.15634 5.20206 5.22162 5.33758 5.40017 5.45447 5.53662 5.63097 5.79183 5.83231 5.90758 6.04102 6.32232 6.40272 6.43599 6.57705 6.61279 6.69775 6.73940 6.89802 6.99491 7.06824 7.22915 7.26023 7.49870 7.65178 7.69912 8.02500 8.17920 8.78824 9.21592 9.62221 10.34931 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.005361 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.521570 B = 5222.074861 C = 6756.062311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.143 3.857 3 N -0.428 5.428 4 C -0.355 4.355 5 H 0.097 0.903 6 C 0.045 3.955 7 N -0.846 5.846 8 Si 0.915 3.085 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.268 1.268 12 C 0.461 3.539 13 O -0.580 6.580 14 C 0.081 3.919 15 H 0.097 0.903 16 C 0.072 3.928 17 N -0.553 5.553 18 C 0.520 3.480 19 C -0.178 4.178 20 O -0.530 6.530 21 C 0.072 3.928 22 C -0.121 4.121 23 C -0.141 4.141 24 C -0.107 4.107 25 C -0.133 4.133 26 C 0.106 3.894 27 O -0.285 6.285 28 H 0.028 0.972 29 H 0.094 0.906 30 H 0.033 0.967 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.272 0.728 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.170 0.830 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 6.039 2.135 9.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 N -0.148 5.148 4 C -0.482 4.482 5 H 0.115 0.885 6 C -0.162 4.162 7 N -0.482 5.482 8 Si 0.740 3.260 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.193 1.193 12 C 0.247 3.753 13 O -0.464 6.464 14 C 0.020 3.980 15 H 0.114 0.886 16 C -0.050 4.050 17 N -0.277 5.277 18 C 0.312 3.688 19 C -0.237 4.237 20 O -0.408 6.408 21 C -0.022 4.022 22 C -0.140 4.140 23 C -0.160 4.160 24 C -0.126 4.126 25 C -0.152 4.152 26 C 0.058 3.942 27 O -0.198 6.198 28 H 0.048 0.952 29 H 0.113 0.887 30 H 0.053 0.947 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.146 0.854 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.187 0.813 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.421 6.034 2.567 9.178 hybrid contribution 0.282 0.118 -1.111 1.152 sum 6.703 6.152 1.457 9.214 Atomic orbital electron populations 1.22097 0.96429 0.99786 1.02305 1.21159 0.94887 0.81844 1.00040 1.43711 1.55052 1.11454 1.04565 1.19636 1.35229 1.10414 0.82924 0.88506 1.25238 0.94949 0.96640 0.99350 1.70101 1.22380 1.28430 1.27318 0.86124 0.79593 0.79212 0.81042 1.19824 1.20586 1.19259 1.19050 0.85760 0.85471 0.85036 1.90597 1.53930 1.69098 1.32777 1.22369 0.94729 0.96539 0.84348 0.88580 1.22745 0.93908 0.81855 1.06481 1.45868 1.40313 1.13615 1.27920 1.20994 0.77818 0.87354 0.82661 1.22027 1.04411 1.00725 0.96546 1.90465 1.54105 1.22040 1.74162 1.18105 0.95550 0.94566 0.93953 1.22028 1.01589 0.92586 0.97823 1.21016 0.97601 1.00280 0.97103 1.20902 0.95881 0.95946 0.99911 1.20400 1.01849 0.93781 0.99156 1.18782 0.90235 0.87965 0.97260 1.86145 1.64641 1.34282 1.34700 0.95242 0.88742 0.94748 0.88974 0.94351 0.91683 0.85415 0.89237 0.88441 0.88647 0.88342 0.81335 0.85886 0.85673 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.65 37.16 0.36 -2.91 16 2 C 0.14 3.21 5.20 -4.04 -0.02 3.19 16 3 N -0.43 -9.76 2.64 -114.81 -0.30 -10.06 16 4 C -0.36 -7.74 8.46 -14.94 -0.13 -7.87 16 5 H 0.10 1.93 5.00 -52.48 -0.26 1.67 16 6 C 0.05 0.98 4.96 -17.47 -0.09 0.90 16 7 N -0.85 -19.25 8.31 55.49 0.46 -18.79 16 8 Si 0.91 16.81 29.60 -169.99 -5.03 11.78 16 9 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 10 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 11 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 12 C 0.46 10.64 6.94 -10.99 -0.08 10.56 16 13 O -0.58 -15.17 16.11 -14.07 -0.23 -15.40 16 14 C 0.08 1.61 2.50 -27.81 -0.07 1.54 16 15 H 0.10 1.93 7.36 -51.93 -0.38 1.55 16 16 C 0.07 1.21 5.45 -3.53 -0.02 1.19 16 17 N -0.55 -9.14 3.02 -112.57 -0.34 -9.47 16 18 C 0.52 8.00 7.76 -10.99 -0.09 7.92 16 19 C -0.18 -2.05 8.76 36.01 0.32 -1.74 16 20 O -0.53 -9.18 13.79 5.54 0.08 -9.11 16 21 C 0.07 1.26 6.34 -83.37 -0.53 0.73 16 22 C -0.12 -1.94 9.03 -39.45 -0.36 -2.30 16 23 C -0.14 -1.92 10.05 -39.56 -0.40 -2.32 16 24 C -0.11 -1.41 10.03 -39.58 -0.40 -1.81 16 25 C -0.13 -2.06 9.97 -39.42 -0.39 -2.45 16 26 C 0.11 1.92 6.52 -39.05 -0.25 1.67 16 27 O -0.29 -5.91 9.53 -39.06 -0.37 -6.28 16 28 H 0.03 0.67 7.98 -51.93 -0.41 0.26 16 29 H 0.09 2.24 5.99 -51.93 -0.31 1.93 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 2.09 6.11 -51.93 -0.32 1.77 16 32 H 0.04 0.85 7.69 -51.93 -0.40 0.45 16 33 H 0.27 5.90 8.31 -40.82 -0.34 5.56 16 34 H 0.13 1.95 4.20 -51.93 -0.22 1.73 16 35 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.10 0.99 8.12 -51.93 -0.42 0.57 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.14 7.54 -51.93 -0.39 0.75 16 39 H 0.17 2.81 4.90 -53.59 -0.26 2.55 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -28.18 337.73 -7.83 -36.01 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.05 Total: 9.92 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -2.14 Total: 6.30 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.18 Total: -38.32 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.52 Total: -30.78 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.18 -7.83 -36.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743892777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.433 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds