Wall clock time and date at job start Tue Mar 31 2020 13:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.46866 * 2 1 4 4 C 1.37092 * 119.99690 * 263.70019 * 3 2 1 5 5 H 1.08007 * 119.99647 * 194.47375 * 4 3 2 6 6 C 1.38942 * 120.00411 * 14.47554 * 4 3 2 7 7 N 1.31407 * 120.00042 * 19.51916 * 6 4 3 8 8 Si 1.86804 * 120.00228 * 199.52119 * 6 4 3 9 9 H 1.48500 * 109.47253 * 89.99792 * 8 6 4 10 10 H 1.48500 * 109.47359 * 209.99730 * 8 6 4 11 11 H 1.48498 * 109.46955 * 329.99895 * 8 6 4 12 12 C 1.34782 * 120.00033 * 83.70111 * 3 2 1 13 13 O 1.21292 * 119.99721 * 355.48690 * 12 3 2 14 14 C 1.50695 * 119.99763 * 175.48382 * 12 3 2 15 15 H 1.08999 * 109.58146 * 49.28673 * 14 12 3 16 16 C 1.53141 * 109.63849 * 289.05337 * 14 12 3 17 17 N 1.47297 * 107.79189 * 182.19694 * 16 14 12 18 18 C 1.34775 * 121.15889 * 221.84180 * 17 16 14 19 19 C 1.50700 * 120.00207 * 4.26621 * 18 17 16 20 20 O 1.21300 * 120.00282 * 184.53752 * 18 17 16 21 21 C 1.40558 * 117.68511 * 41.57368 * 17 16 14 22 22 C 1.38569 * 120.09319 * 166.53531 * 21 17 16 23 23 C 1.38263 * 119.87932 * 179.83491 * 22 21 17 24 24 C 1.38284 * 120.05645 * 0.02562 * 23 22 21 25 25 C 1.38202 * 120.29752 * 0.04871 * 24 23 22 26 26 C 1.38708 * 120.04952 * 359.97438 * 25 24 23 27 27 O 1.35905 * 119.66378 * 179.66288 * 26 25 24 28 28 H 1.09000 * 109.47143 * 299.53498 * 1 2 3 29 29 H 1.09004 * 109.47029 * 59.53709 * 1 2 3 30 30 H 1.08997 * 109.46570 * 179.53511 * 1 2 3 31 31 H 1.08995 * 109.47275 * 240.00173 * 2 1 3 32 32 H 1.09007 * 109.46749 * 119.99642 * 2 1 3 33 33 H 0.97006 * 120.00457 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.80679 * 62.57177 * 16 14 12 35 35 H 1.08993 * 109.65785 * 301.74131 * 16 14 12 36 36 H 1.08995 * 109.47713 * 176.40605 * 19 18 17 37 37 H 1.09003 * 109.46838 * 296.40381 * 19 18 17 38 38 H 1.09000 * 109.46864 * 56.39570 * 19 18 17 39 39 H 1.07999 * 120.06800 * 359.81321 * 22 21 17 40 40 H 1.07993 * 119.97498 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.85075 * 180.02562 * 24 23 22 42 42 H 1.07990 * 119.97849 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3696 1.9840 -1.1801 5 1 2.9417 2.9001 -1.1692 6 6 1.9898 1.4166 -2.3902 7 7 1.0009 0.5520 -2.4287 8 14 2.8847 1.8827 -3.9622 9 1 4.0289 0.9597 -4.1727 10 1 1.9503 1.7829 -5.1120 11 1 3.3866 3.2759 -3.8516 12 6 2.1222 2.0593 1.1602 13 8 1.7351 1.5559 2.1936 14 6 2.7194 3.4428 1.1734 15 1 2.2515 4.0501 0.3986 16 6 4.2263 3.3555 0.9148 17 7 4.7756 4.7202 0.9891 18 6 5.6966 5.1503 0.1042 19 6 6.1114 4.2646 -1.0423 20 8 6.1954 6.2485 0.2334 21 6 4.3015 5.5601 2.0116 22 6 4.9675 6.7388 2.3072 23 6 4.4953 7.5634 3.3116 24 6 3.3609 7.2122 4.0201 25 6 2.6938 6.0371 3.7303 26 6 3.1604 5.2034 2.7247 27 8 2.5023 4.0462 2.4509 28 1 -0.3633 0.5066 0.8941 29 1 -0.3633 0.5210 -0.8858 30 1 -0.3632 -1.0276 -0.0083 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 0.7359 0.1555 -3.2735 34 1 4.4075 2.9373 -0.0754 35 1 4.6927 2.7272 1.6735 36 1 6.8109 4.8023 -1.6823 37 1 6.5916 3.3670 -0.6527 38 1 5.2315 3.9838 -1.6211 39 1 5.8539 7.0127 1.7545 40 1 5.0134 8.4821 3.5436 41 1 2.9948 7.8590 4.8036 42 1 1.8081 5.7681 4.2865 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743892777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:31 Heat of formation + Delta-G solvation = -57.131290 kcal Electronic energy + Delta-G solvation = -27939.452120 eV Core-core repulsion = 24078.795995 eV Total energy + Delta-G solvation = -3860.656124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.60730 -40.75811 -40.02487 -38.40823 -37.03742 -36.59645 -33.57350 -32.94724 -32.17654 -31.21266 -30.50952 -28.87931 -26.95752 -26.00392 -24.44861 -23.83912 -22.49386 -21.19051 -20.63658 -19.62574 -19.06886 -18.66473 -17.92570 -17.27996 -17.05064 -16.82196 -16.50011 -16.07163 -15.95838 -15.56198 -15.45969 -15.03900 -14.78052 -14.69808 -14.43465 -14.29438 -14.08882 -13.69733 -13.42086 -13.19879 -13.10175 -12.97248 -12.85028 -12.82467 -12.60857 -12.45633 -12.29793 -12.06022 -11.96439 -11.65290 -11.33240 -10.92054 -10.64994 -10.36418 -9.79443 -9.53592 -8.90737 -8.28552 -5.94875 0.19643 0.36319 1.32241 1.42294 1.50562 1.53803 1.62855 1.77629 1.91834 2.33264 2.77129 2.98704 3.07093 3.31445 3.37278 3.73835 3.78697 3.93565 4.10166 4.19033 4.28941 4.31659 4.43887 4.46037 4.52990 4.53665 4.58041 4.79035 4.82186 4.94153 4.94849 5.09706 5.16316 5.27668 5.33654 5.40401 5.43762 5.55157 5.74878 5.83238 5.86157 6.06890 6.30953 6.44361 6.82873 7.05865 7.45123 7.86326 8.67178 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.005361 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.521570 B = 5222.074861 C = 6756.062311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.143 3.857 3 N -0.429 5.429 4 C -0.370 4.370 5 H 0.114 0.886 6 C 0.009 3.991 7 N -0.870 5.870 8 Si 0.979 3.021 9 H -0.265 1.265 10 H -0.291 1.291 11 H -0.253 1.253 12 C 0.448 3.552 13 O -0.622 6.622 14 C 0.088 3.912 15 H 0.089 0.911 16 C 0.086 3.914 17 N -0.556 5.556 18 C 0.514 3.486 19 C -0.174 4.174 20 O -0.552 6.552 21 C 0.053 3.947 22 C -0.134 4.134 23 C -0.130 4.130 24 C -0.096 4.096 25 C -0.139 4.139 26 C 0.069 3.931 27 O -0.313 6.313 28 H 0.009 0.991 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.274 0.726 34 H 0.144 0.856 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 7.551 1.376 11.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.020 3.980 3 N -0.147 5.147 4 C -0.497 4.497 5 H 0.132 0.868 6 C -0.196 4.196 7 N -0.506 5.506 8 Si 0.802 3.198 9 H -0.190 1.190 10 H -0.217 1.217 11 H -0.177 1.177 12 C 0.235 3.765 13 O -0.510 6.510 14 C 0.028 3.972 15 H 0.107 0.893 16 C -0.036 4.036 17 N -0.281 5.281 18 C 0.308 3.692 19 C -0.233 4.233 20 O -0.431 6.431 21 C -0.040 4.040 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.114 4.114 25 C -0.158 4.158 26 C 0.022 3.978 27 O -0.226 6.226 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.181 0.819 40 H 0.175 0.825 41 H 0.183 0.817 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.925 7.557 1.799 11.097 hybrid contribution -0.240 -0.296 -0.829 0.913 sum 7.685 7.261 0.969 10.617 Atomic orbital electron populations 1.21952 0.96223 1.00676 1.00451 1.21152 0.95016 0.82154 0.99668 1.43915 1.54223 1.11489 1.05066 1.20067 1.35736 1.11218 0.82630 0.86821 1.26061 0.95134 0.96390 1.01972 1.70189 1.23166 1.29106 1.28163 0.85130 0.78249 0.79790 0.76613 1.18973 1.21703 1.17689 1.19548 0.85861 0.86573 0.84529 1.90550 1.55905 1.70418 1.34098 1.22118 0.96527 0.94256 0.84312 0.89322 1.22582 0.91613 0.82289 1.07133 1.45966 1.40599 1.13291 1.28206 1.21734 0.76982 0.87554 0.82938 1.22119 1.05016 1.00967 0.95170 1.90450 1.54768 1.23170 1.74755 1.18360 0.95784 0.95389 0.94502 1.22138 1.01683 0.92689 0.98893 1.21453 0.97297 1.00656 0.95430 1.21324 0.94961 0.95069 1.00056 1.20744 1.02331 0.94268 0.98453 1.19156 0.91329 0.88118 0.99167 1.86087 1.65837 1.35807 1.34896 0.97136 0.90188 0.92601 0.89020 0.94756 0.91529 0.83843 0.89477 0.86774 0.86537 0.87945 0.81898 0.82478 0.81653 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 9.65 71.98 0.69 -5.38 16 2 C 0.14 6.51 5.20 86.38 0.45 6.96 16 3 N -0.43 -19.83 2.64 -635.52 -1.68 -21.51 16 4 C -0.37 -15.94 8.46 84.04 0.71 -15.23 16 5 H 0.11 4.40 5.00 -2.91 -0.01 4.39 16 6 C 0.01 0.40 4.96 84.92 0.42 0.82 16 7 N -0.87 -39.29 8.31 21.66 0.18 -39.11 16 8 Si 0.98 32.92 29.60 68.60 2.03 34.95 16 9 H -0.26 -8.57 7.11 99.48 0.71 -7.87 16 10 H -0.29 -10.27 7.11 99.48 0.71 -9.56 16 11 H -0.25 -7.88 7.11 99.48 0.71 -7.18 16 12 C 0.45 21.31 6.94 87.65 0.61 21.91 16 13 O -0.62 -33.94 16.11 15.69 0.25 -33.69 16 14 C 0.09 3.61 2.50 29.89 0.07 3.68 16 15 H 0.09 3.67 7.36 -2.39 -0.02 3.65 16 16 C 0.09 2.88 5.45 86.27 0.47 3.35 16 17 N -0.56 -18.14 3.02 -628.45 -1.90 -20.04 16 18 C 0.51 15.17 7.76 87.66 0.68 15.85 16 19 C -0.17 -3.56 8.76 71.24 0.62 -2.93 16 20 O -0.55 -18.56 13.79 -3.09 -0.04 -18.60 16 21 C 0.05 1.86 6.34 38.05 0.24 2.11 16 22 C -0.13 -4.17 9.03 22.35 0.20 -3.97 16 23 C -0.13 -3.17 10.05 22.29 0.22 -2.95 16 24 C -0.10 -2.24 10.03 22.27 0.22 -2.02 16 25 C -0.14 -4.20 9.97 22.37 0.22 -3.98 16 26 C 0.07 2.55 6.52 22.62 0.15 2.69 16 27 O -0.31 -13.43 9.53 -73.72 -0.70 -14.13 16 28 H 0.01 0.46 7.98 -2.39 -0.02 0.44 16 29 H 0.08 3.85 5.99 -2.38 -0.01 3.84 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.09 4.18 6.11 -2.39 -0.01 4.16 16 32 H 0.03 1.57 7.69 -2.38 -0.02 1.55 16 33 H 0.27 11.76 8.31 -92.70 -0.77 10.99 16 34 H 0.14 4.21 4.20 -2.39 -0.01 4.20 16 35 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.11 1.96 8.12 -2.39 -0.02 1.94 16 37 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 2.06 7.54 -2.39 -0.02 2.04 16 39 H 0.16 5.28 4.90 -20.38 -0.10 5.18 16 40 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 41 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 42 H 0.14 3.91 8.06 -2.92 -0.02 3.89 16 Total: -1.00 -62.46 337.73 5.12 -57.34 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.98 Total: 33.86 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 5.99 Total: 20.93 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -3.39 Total: -80.66 kcal Atomic # 8 Polarization: -65.93 SS G_CDS: -0.49 Total: -66.43 kcal Atomic # 14 Polarization: 32.92 SS G_CDS: 2.03 Total: 34.95 kcal Total: -62.46 5.12 -57.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743892777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.213 kcal (2) G-P(sol) polarization free energy of solvation -62.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds