Wall clock time and date at job start Tue Mar 31 2020 13:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46912 * 2 1 4 4 C 1.37098 * 119.99516 * 275.04959 * 3 2 1 5 5 H 1.08005 * 119.99652 * 154.61935 * 4 3 2 6 6 C 1.38948 * 120.00466 * 334.61381 * 4 3 2 7 7 N 1.31420 * 119.99692 * 331.43741 * 6 4 3 8 8 Si 1.86799 * 120.00200 * 151.43239 * 6 4 3 9 9 H 1.48497 * 109.46843 * 94.99635 * 8 6 4 10 10 H 1.48498 * 109.47075 * 214.99661 * 8 6 4 11 11 H 1.48498 * 109.46909 * 334.99951 * 8 6 4 12 12 C 1.34773 * 120.00002 * 95.04268 * 3 2 1 13 13 O 1.21299 * 119.99546 * 175.23301 * 12 3 2 14 14 C 1.50700 * 120.00250 * 355.23452 * 12 3 2 15 15 H 1.08995 * 109.69445 * 317.90216 * 14 12 3 16 16 C 1.53546 * 109.57952 * 78.24105 * 14 12 3 17 17 N 1.47295 * 107.57381 * 178.00327 * 16 14 12 18 18 C 1.34780 * 121.15755 * 138.03317 * 17 16 14 19 19 C 1.50697 * 119.99924 * 355.02256 * 18 17 16 20 20 O 1.21297 * 119.99639 * 175.01852 * 18 17 16 21 21 C 1.40556 * 117.68403 * 318.05628 * 17 16 14 22 22 C 1.38578 * 120.08861 * 193.59089 * 21 17 16 23 23 C 1.38249 * 119.87859 * 180.16955 * 22 21 17 24 24 C 1.38282 * 120.06052 * 0.04179 * 23 22 21 25 25 C 1.38206 * 120.29128 * 359.94889 * 24 23 22 26 26 C 1.38697 * 120.05764 * 359.97438 * 25 24 23 27 27 O 1.35902 * 119.67159 * 180.21482 * 26 25 24 28 28 H 1.09003 * 109.47308 * 299.99784 * 1 2 3 29 29 H 1.08994 * 109.47773 * 60.00350 * 1 2 3 30 30 H 1.09000 * 109.46730 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47381 * 240.00096 * 2 1 3 32 32 H 1.09001 * 109.47132 * 119.99561 * 2 1 3 33 33 H 0.96997 * 119.99631 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.83316 * 58.48933 * 16 14 12 35 35 H 1.08998 * 109.83496 * 297.52446 * 16 14 12 36 36 H 1.08995 * 109.47446 * 84.56296 * 19 18 17 37 37 H 1.09002 * 109.46663 * 204.56015 * 19 18 17 38 38 H 1.09003 * 109.46903 * 324.55525 * 19 18 17 39 39 H 1.08007 * 120.06200 * 0.19391 * 22 21 17 40 40 H 1.07998 * 119.97035 * 179.76408 * 23 22 21 41 41 H 1.07991 * 119.85241 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.96904 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1482 2.0623 -1.1828 5 1 2.1018 3.1413 -1.1925 6 6 2.3396 1.3645 -2.3690 7 7 2.9390 0.1951 -2.3539 8 14 1.7449 2.0885 -3.9850 9 1 2.8617 2.8120 -4.6439 10 1 1.2709 0.9960 -4.8721 11 1 0.6292 3.0330 -3.7233 12 6 2.3396 1.9824 1.1627 13 8 2.8250 3.0941 1.1567 14 6 2.0959 1.2736 2.4700 15 1 1.1261 0.7769 2.4434 16 6 3.2005 0.2332 2.7049 17 7 2.9473 -0.3968 4.0120 18 6 3.0878 -1.7262 4.1843 19 6 3.4008 -2.6099 3.0045 20 8 2.9623 -2.2111 5.2890 21 6 2.5536 0.4364 5.0733 22 6 2.5742 -0.0394 6.3747 23 6 2.1828 0.7828 7.4149 24 6 1.7706 2.0774 7.1571 25 6 1.7484 2.5569 5.8611 26 6 2.1408 1.7399 4.8113 27 8 2.1201 2.2209 3.5404 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0723 -0.2922 -3.1819 34 1 4.1743 0.7231 2.7128 35 1 3.1713 -0.5212 1.9187 36 1 4.4769 -2.6173 2.8314 37 1 3.0588 -3.6244 3.2096 38 1 2.8929 -2.2273 2.1191 39 1 2.8959 -1.0506 6.5760 40 1 2.1946 0.4123 8.4292 41 1 1.4652 2.7166 7.9722 42 1 1.4252 3.5687 5.6657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743892780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:37 Heat of formation + Delta-G solvation = -41.815455 kcal Electronic energy + Delta-G solvation = -27826.340027 eV Core-core repulsion = 23966.348048 eV Total energy + Delta-G solvation = -3859.991980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.41663 -39.30982 -38.64246 -37.09783 -35.56240 -35.11946 -32.37422 -31.33996 -30.68330 -29.72153 -29.59234 -27.92479 -25.60706 -24.40480 -23.18013 -22.46874 -21.47424 -19.71837 -19.34574 -18.02763 -17.55061 -17.19715 -16.72815 -16.09271 -15.71004 -15.57435 -15.05334 -15.01077 -14.53514 -14.24293 -13.94526 -13.72396 -13.59149 -13.32990 -13.20165 -13.09309 -12.78957 -12.45860 -12.23440 -12.06782 -11.96425 -11.78027 -11.56134 -11.36915 -11.22781 -11.13513 -10.82267 -10.54571 -10.47573 -10.21143 -10.10632 -9.47008 -9.24282 -8.62420 -8.39126 -7.78658 -7.73740 -6.55652 -4.08157 1.29687 1.50667 2.47650 2.55267 3.02122 3.09342 3.16854 3.28204 3.55484 3.88733 4.04538 4.30190 4.51619 4.62240 4.80097 4.87314 4.95470 5.07564 5.12303 5.17201 5.27764 5.33354 5.40579 5.46208 5.54665 5.62664 5.73892 5.79723 5.92523 6.05451 6.11986 6.23650 6.30031 6.35823 6.49214 6.62662 6.73641 6.94754 7.06633 7.15214 7.43706 7.53622 7.92006 7.94148 8.28126 8.94238 9.16171 9.71520 10.44450 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.004273 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.138980 B = 6551.358828 C = 7526.738328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 N -0.426 5.426 4 C -0.306 4.306 5 H 0.101 0.899 6 C 0.038 3.962 7 N -0.859 5.859 8 Si 0.917 3.083 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.267 1.267 12 C 0.454 3.546 13 O -0.555 6.555 14 C 0.071 3.929 15 H 0.088 0.912 16 C 0.071 3.929 17 N -0.553 5.553 18 C 0.519 3.481 19 C -0.177 4.177 20 O -0.528 6.528 21 C 0.071 3.929 22 C -0.120 4.120 23 C -0.140 4.140 24 C -0.106 4.106 25 C -0.132 4.132 26 C 0.103 3.897 27 O -0.282 6.282 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.133 0.867 32 H 0.044 0.956 33 H 0.271 0.729 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.171 0.829 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.253 -5.936 10.127 11.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.053 4.053 3 N -0.145 5.145 4 C -0.433 4.433 5 H 0.119 0.881 6 C -0.166 4.166 7 N -0.497 5.497 8 Si 0.743 3.257 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.192 1.192 12 C 0.239 3.761 13 O -0.437 6.437 14 C 0.010 3.990 15 H 0.105 0.895 16 C -0.051 4.051 17 N -0.278 5.278 18 C 0.310 3.690 19 C -0.236 4.236 20 O -0.406 6.406 21 C -0.022 4.022 22 C -0.140 4.140 23 C -0.159 4.159 24 C -0.125 4.125 25 C -0.151 4.151 26 C 0.056 3.944 27 O -0.194 6.194 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.187 0.813 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.990 -5.657 10.402 12.007 hybrid contribution -0.294 0.042 -0.907 0.954 sum -2.285 -5.615 9.495 11.265 Atomic orbital electron populations 1.22113 0.97506 1.00532 1.01872 1.22131 0.93148 0.85338 1.04689 1.43562 1.54459 1.12088 1.04422 1.19560 1.48838 0.93091 0.81852 0.88142 1.25236 0.95268 0.96400 0.99723 1.69811 1.35600 1.15450 1.28812 0.86062 0.79704 0.78926 0.80996 1.20208 1.20568 1.19155 1.19332 0.84601 0.88619 0.83503 1.90587 1.46571 1.20403 1.86145 1.22700 0.98885 0.89557 0.87906 0.89464 1.22910 1.00304 0.97494 0.84391 1.45885 1.64890 1.06808 1.10184 1.21009 0.75718 0.80993 0.91238 1.22028 1.04904 1.00253 0.96444 1.90471 1.50198 1.73730 1.26163 1.18098 1.04551 0.90929 0.88658 1.22044 0.99513 1.02945 0.89490 1.21031 1.01973 0.93987 0.98887 1.20921 1.00101 0.95955 0.95559 1.20414 1.03586 1.00453 0.90626 1.18800 0.98588 0.91655 0.85399 1.86184 1.88654 1.33797 1.10799 0.94125 0.91805 0.92888 0.85010 0.93780 0.91849 0.88496 0.86077 0.88131 0.88168 0.89110 0.81262 0.85793 0.85575 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.13 37.16 0.38 -2.35 16 2 C 0.07 1.35 5.33 -4.04 -0.02 1.33 16 3 N -0.43 -9.85 2.60 -114.81 -0.30 -10.15 16 4 C -0.31 -7.85 9.06 -14.93 -0.14 -7.98 16 5 H 0.10 2.75 7.63 -52.48 -0.40 2.35 16 6 C 0.04 0.92 4.94 -17.46 -0.09 0.84 16 7 N -0.86 -20.54 11.06 55.50 0.61 -19.93 16 8 Si 0.92 18.98 29.64 -169.99 -5.04 13.95 16 9 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 10 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 12 C 0.45 10.61 6.92 -10.99 -0.08 10.54 16 13 O -0.56 -15.34 16.36 -13.65 -0.22 -15.57 16 14 C 0.07 1.34 2.52 -27.60 -0.07 1.27 16 15 H 0.09 1.55 6.60 -51.93 -0.34 1.20 16 16 C 0.07 1.15 5.49 -3.32 -0.02 1.13 16 17 N -0.55 -8.62 3.01 -112.34 -0.34 -8.96 16 18 C 0.52 7.39 7.76 -10.99 -0.09 7.31 16 19 C -0.18 -1.80 9.46 36.00 0.34 -1.46 16 20 O -0.53 -8.61 13.80 5.54 0.08 -8.54 16 21 C 0.07 1.19 6.34 -83.37 -0.53 0.66 16 22 C -0.12 -1.85 9.04 -39.45 -0.36 -2.20 16 23 C -0.14 -1.81 10.05 -39.56 -0.40 -2.21 16 24 C -0.11 -1.34 10.03 -39.58 -0.40 -1.73 16 25 C -0.13 -1.96 9.97 -39.42 -0.39 -2.36 16 26 C 0.10 1.81 6.51 -39.05 -0.25 1.56 16 27 O -0.28 -5.67 9.57 -38.63 -0.37 -6.04 16 28 H 0.04 0.66 7.34 -51.93 -0.38 0.28 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.13 2.77 5.02 -51.93 -0.26 2.51 16 32 H 0.04 0.71 4.18 -51.93 -0.22 0.50 16 33 H 0.27 6.10 8.31 -40.82 -0.34 5.76 16 34 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 35 H 0.12 1.72 3.51 -51.93 -0.18 1.54 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.87 6.23 -51.93 -0.32 0.55 16 39 H 0.17 2.69 4.90 -53.64 -0.26 2.43 16 40 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -30.83 339.50 -7.45 -38.28 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.89 Total: 7.50 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.10 Total: 4.34 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.02 Total: -39.03 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.52 Total: -30.15 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.04 Total: 13.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.83 -7.45 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743892780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.537 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds