Wall clock time and date at job start Tue Mar 31 2020 13:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46912 * 2 1 4 4 C 1.37098 * 119.99516 * 275.04959 * 3 2 1 5 5 H 1.08005 * 119.99652 * 154.61935 * 4 3 2 6 6 C 1.38948 * 120.00466 * 334.61381 * 4 3 2 7 7 N 1.31420 * 119.99692 * 331.43741 * 6 4 3 8 8 Si 1.86799 * 120.00200 * 151.43239 * 6 4 3 9 9 H 1.48497 * 109.46843 * 94.99635 * 8 6 4 10 10 H 1.48498 * 109.47075 * 214.99661 * 8 6 4 11 11 H 1.48498 * 109.46909 * 334.99951 * 8 6 4 12 12 C 1.34773 * 120.00002 * 95.04268 * 3 2 1 13 13 O 1.21299 * 119.99546 * 175.23301 * 12 3 2 14 14 C 1.50700 * 120.00250 * 355.23452 * 12 3 2 15 15 H 1.08995 * 109.69445 * 317.90216 * 14 12 3 16 16 C 1.53546 * 109.57952 * 78.24105 * 14 12 3 17 17 N 1.47295 * 107.57381 * 178.00327 * 16 14 12 18 18 C 1.34780 * 121.15755 * 138.03317 * 17 16 14 19 19 C 1.50697 * 119.99924 * 355.02256 * 18 17 16 20 20 O 1.21297 * 119.99639 * 175.01852 * 18 17 16 21 21 C 1.40556 * 117.68403 * 318.05628 * 17 16 14 22 22 C 1.38578 * 120.08861 * 193.59089 * 21 17 16 23 23 C 1.38249 * 119.87859 * 180.16955 * 22 21 17 24 24 C 1.38282 * 120.06052 * 0.04179 * 23 22 21 25 25 C 1.38206 * 120.29128 * 359.94889 * 24 23 22 26 26 C 1.38697 * 120.05764 * 359.97438 * 25 24 23 27 27 O 1.35902 * 119.67159 * 180.21482 * 26 25 24 28 28 H 1.09003 * 109.47308 * 299.99784 * 1 2 3 29 29 H 1.08994 * 109.47773 * 60.00350 * 1 2 3 30 30 H 1.09000 * 109.46730 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47381 * 240.00096 * 2 1 3 32 32 H 1.09001 * 109.47132 * 119.99561 * 2 1 3 33 33 H 0.96997 * 119.99631 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.83316 * 58.48933 * 16 14 12 35 35 H 1.08998 * 109.83496 * 297.52446 * 16 14 12 36 36 H 1.08995 * 109.47446 * 84.56296 * 19 18 17 37 37 H 1.09002 * 109.46663 * 204.56015 * 19 18 17 38 38 H 1.09003 * 109.46903 * 324.55525 * 19 18 17 39 39 H 1.08007 * 120.06200 * 0.19391 * 22 21 17 40 40 H 1.07998 * 119.97035 * 179.76408 * 23 22 21 41 41 H 1.07991 * 119.85241 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.96904 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1482 2.0623 -1.1828 5 1 2.1018 3.1413 -1.1925 6 6 2.3396 1.3645 -2.3690 7 7 2.9390 0.1951 -2.3539 8 14 1.7449 2.0885 -3.9850 9 1 2.8617 2.8120 -4.6439 10 1 1.2709 0.9960 -4.8721 11 1 0.6292 3.0330 -3.7233 12 6 2.3396 1.9824 1.1627 13 8 2.8250 3.0941 1.1567 14 6 2.0959 1.2736 2.4700 15 1 1.1261 0.7769 2.4434 16 6 3.2005 0.2332 2.7049 17 7 2.9473 -0.3968 4.0120 18 6 3.0878 -1.7262 4.1843 19 6 3.4008 -2.6099 3.0045 20 8 2.9623 -2.2111 5.2890 21 6 2.5536 0.4364 5.0733 22 6 2.5742 -0.0394 6.3747 23 6 2.1828 0.7828 7.4149 24 6 1.7706 2.0774 7.1571 25 6 1.7484 2.5569 5.8611 26 6 2.1408 1.7399 4.8113 27 8 2.1201 2.2209 3.5404 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0723 -0.2922 -3.1819 34 1 4.1743 0.7231 2.7128 35 1 3.1713 -0.5212 1.9187 36 1 4.4769 -2.6173 2.8314 37 1 3.0588 -3.6244 3.2096 38 1 2.8929 -2.2273 2.1191 39 1 2.8959 -1.0506 6.5760 40 1 2.1946 0.4123 8.4292 41 1 1.4652 2.7166 7.9722 42 1 1.4252 3.5687 5.6657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743892780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:36 Heat of formation + Delta-G solvation = -59.753268 kcal Electronic energy + Delta-G solvation = -27827.117869 eV Core-core repulsion = 23966.348048 eV Total energy + Delta-G solvation = -3860.769822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -42.67474 -40.76926 -40.03960 -38.40583 -37.11564 -36.64185 -34.15468 -32.47880 -31.96882 -31.30022 -30.71408 -29.08097 -27.27855 -25.88530 -24.33258 -23.97728 -22.73280 -21.17667 -20.64368 -19.39119 -18.94776 -18.75688 -18.18690 -17.41491 -17.05761 -16.97691 -16.64563 -16.28586 -15.95124 -15.62472 -15.30458 -15.14500 -14.92830 -14.76874 -14.52184 -14.39292 -14.05908 -13.67577 -13.63532 -13.37769 -13.18729 -12.95590 -12.92014 -12.83685 -12.68664 -12.50250 -12.31018 -12.11206 -12.06929 -11.78397 -11.38233 -11.03726 -10.67580 -10.41257 -9.62266 -9.56373 -8.94623 -8.40597 -6.01885 0.17106 0.34174 1.24411 1.39256 1.41487 1.45279 1.54717 1.75493 1.89386 2.35167 2.75248 2.91350 2.98208 3.22703 3.27306 3.54435 3.65925 3.78730 3.84568 4.11435 4.17144 4.25982 4.28923 4.40322 4.43248 4.51667 4.54764 4.58771 4.74263 4.76807 4.93859 4.96555 5.13611 5.26134 5.29835 5.40845 5.41915 5.53614 5.58041 5.79788 6.02628 6.06554 6.28512 6.45716 6.79996 7.07859 7.32460 7.89502 8.57706 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.004273 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.138980 B = 6551.358828 C = 7526.738328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.067 3.933 3 N -0.427 5.427 4 C -0.347 4.347 5 H 0.067 0.933 6 C 0.019 3.981 7 N -0.864 5.864 8 Si 0.974 3.026 9 H -0.279 1.279 10 H -0.261 1.261 11 H -0.273 1.273 12 C 0.440 3.560 13 O -0.614 6.614 14 C 0.082 3.918 15 H 0.100 0.900 16 C 0.084 3.916 17 N -0.555 5.555 18 C 0.514 3.486 19 C -0.173 4.173 20 O -0.550 6.550 21 C 0.054 3.946 22 C -0.134 4.134 23 C -0.129 4.129 24 C -0.095 4.095 25 C -0.139 4.139 26 C 0.068 3.932 27 O -0.312 6.312 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.281 0.719 34 H 0.083 0.917 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 -7.975 10.954 13.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.055 4.055 3 N -0.146 5.146 4 C -0.474 4.474 5 H 0.085 0.915 6 C -0.186 4.186 7 N -0.501 5.501 8 Si 0.798 3.202 9 H -0.204 1.204 10 H -0.186 1.186 11 H -0.198 1.198 12 C 0.228 3.772 13 O -0.501 6.501 14 C 0.021 3.979 15 H 0.118 0.882 16 C -0.039 4.039 17 N -0.280 5.280 18 C 0.308 3.692 19 C -0.231 4.231 20 O -0.429 6.429 21 C -0.040 4.040 22 C -0.153 4.153 23 C -0.147 4.147 24 C -0.113 4.113 25 C -0.158 4.158 26 C 0.021 3.979 27 O -0.226 6.226 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.159 0.841 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.182 0.818 40 H 0.176 0.824 41 H 0.183 0.817 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.699 -7.762 11.230 13.916 hybrid contribution -0.056 0.667 -1.079 1.269 sum -2.756 -7.096 10.152 12.689 Atomic orbital electron populations 1.22059 0.95612 1.02645 1.01095 1.22308 0.94739 0.83106 1.05390 1.43774 1.53626 1.13343 1.03806 1.19406 1.51921 0.92241 0.83812 0.91492 1.25826 0.94363 0.96721 1.01662 1.69838 1.34499 1.15699 1.30073 0.85231 0.78778 0.78611 0.77618 1.20443 1.18558 1.19795 1.20025 0.83850 0.88240 0.85082 1.90529 1.49271 1.22963 1.87287 1.22433 1.00380 0.89345 0.85765 0.88241 1.22717 0.98480 0.97177 0.85509 1.45960 1.65171 1.07326 1.09507 1.21777 0.74715 0.80552 0.92148 1.22123 1.06189 1.00120 0.94667 1.90458 1.51192 1.73816 1.27436 1.18344 1.05062 0.90991 0.89606 1.22159 1.00337 1.03248 0.89562 1.21464 0.99735 0.93686 0.99832 1.21334 0.98402 0.96227 0.95383 1.20750 1.03187 1.00628 0.91196 1.19153 1.01099 0.92889 0.84724 1.86120 1.89549 1.34867 1.12066 0.93912 0.93614 0.89231 0.86344 0.90823 0.90914 0.89855 0.84067 0.86383 0.86390 0.88286 0.81754 0.82420 0.81654 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 10.13 71.98 0.73 -4.31 16 2 C 0.07 2.50 5.33 86.38 0.46 2.96 16 3 N -0.43 -20.32 2.60 -635.53 -1.65 -21.97 16 4 C -0.35 -18.43 9.06 84.04 0.76 -17.67 16 5 H 0.07 3.93 7.63 -2.91 -0.02 3.91 16 6 C 0.02 0.92 4.94 84.92 0.42 1.34 16 7 N -0.86 -40.66 11.06 21.66 0.24 -40.42 16 8 Si 0.97 38.82 29.64 68.60 2.03 40.85 16 9 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 12 C 0.44 21.56 6.92 87.66 0.61 22.16 16 13 O -0.61 -36.22 16.36 15.26 0.25 -35.97 16 14 C 0.08 3.18 2.52 30.03 0.08 3.25 16 15 H 0.10 3.54 6.60 -2.39 -0.02 3.52 16 16 C 0.08 2.70 5.49 86.41 0.47 3.18 16 17 N -0.55 -16.99 3.01 -627.70 -1.89 -18.88 16 18 C 0.51 13.92 7.76 87.66 0.68 14.60 16 19 C -0.17 -3.04 9.46 71.23 0.67 -2.37 16 20 O -0.55 -17.26 13.80 -3.08 -0.04 -17.30 16 21 C 0.05 1.78 6.34 38.06 0.24 2.02 16 22 C -0.13 -3.93 9.04 22.35 0.20 -3.73 16 23 C -0.13 -2.97 10.05 22.28 0.22 -2.75 16 24 C -0.10 -2.12 10.03 22.27 0.22 -1.90 16 25 C -0.14 -4.04 9.97 22.37 0.22 -3.81 16 26 C 0.07 2.41 6.51 22.61 0.15 2.56 16 27 O -0.31 -13.10 9.57 -74.10 -0.71 -13.81 16 28 H 0.04 1.35 7.34 -2.39 -0.02 1.33 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.12 4.85 5.02 -2.39 -0.01 4.83 16 32 H 0.07 2.26 4.18 -2.39 -0.01 2.25 16 33 H 0.28 12.16 8.31 -92.71 -0.77 11.39 16 34 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 35 H 0.14 3.84 3.51 -2.39 -0.01 3.83 16 36 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.10 1.59 6.23 -2.39 -0.01 1.58 16 39 H 0.17 5.05 4.90 -21.17 -0.10 4.94 16 40 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.17 2.38 8.06 -2.92 -0.02 2.36 16 42 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -70.78 339.50 5.35 -65.43 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.98 Total: 26.53 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 6.14 Total: 15.55 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -3.30 Total: -81.28 kcal Atomic # 8 Polarization: -66.58 SS G_CDS: -0.50 Total: -67.09 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -70.78 5.35 -65.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743892780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.681 kcal (2) G-P(sol) polarization free energy of solvation -70.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds