Wall clock time and date at job start Tue Mar 31 2020 13:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42906 * 109.47090 * 2 1 4 4 C 1.35972 * 116.99933 * 179.97438 * 3 2 1 5 5 C 1.38722 * 119.98519 * 359.97438 * 4 3 2 6 6 C 1.38097 * 120.01318 * 179.97438 * 5 4 3 7 7 C 1.38845 * 119.98289 * 0.02562 * 6 5 4 8 8 N 1.40116 * 120.01035 * 179.97438 * 7 6 5 9 9 C 1.46765 * 124.34786 * 173.97985 * 8 7 6 10 10 C 1.54662 * 105.38191 * 162.85168 * 9 8 7 11 11 H 1.09000 * 111.22590 * 267.58223 * 10 9 8 12 12 C 1.50695 * 110.81737 * 143.77441 * 10 9 8 13 13 O 1.21294 * 120.00634 * 6.35569 * 12 10 9 14 14 N 1.34782 * 119.99671 * 186.34832 * 12 10 9 15 15 C 1.37103 * 119.99678 * 180.02562 * 14 12 10 16 16 H 1.07993 * 120.00264 * 359.97438 * 15 14 12 17 17 C 1.38954 * 119.99703 * 180.02562 * 15 14 12 18 18 N 1.31408 * 119.99950 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99915 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46714 * 60.00555 * 19 17 15 21 21 H 1.48497 * 109.46904 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47394 * 300.00191 * 19 17 15 23 23 C 1.54631 * 101.68063 * 25.76678 * 10 9 8 24 24 C 1.34421 * 124.35080 * 354.27636 * 8 7 6 25 25 O 1.21293 * 124.93926 * 0.39507 * 24 8 7 26 26 C 1.38840 * 119.97213 * 359.97438 * 7 6 5 27 27 C 1.38085 * 119.98878 * 0.02562 * 26 7 6 28 28 H 1.09000 * 109.47383 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47594 * 300.00487 * 1 2 3 30 30 H 1.09009 * 109.46827 * 60.00321 * 1 2 3 31 31 H 1.09000 * 109.47869 * 239.99958 * 2 1 3 32 32 H 1.09006 * 109.47104 * 119.99237 * 2 1 3 33 33 H 1.08002 * 119.99443 * 0.02562 * 5 4 3 34 34 H 1.07999 * 120.00596 * 180.27494 * 6 5 4 35 35 H 1.08994 * 110.24694 * 281.98314 * 9 8 7 36 36 H 1.08998 * 110.24284 * 43.98245 * 9 8 7 37 37 H 0.96998 * 119.99863 * 0.02562 * 14 12 10 38 38 H 0.97000 * 120.00241 * 179.97438 * 18 17 15 39 39 H 1.09000 * 110.48450 * 216.30489 * 23 10 9 40 40 H 1.09001 * 110.48485 * 93.66308 * 23 10 9 41 41 H 1.08003 * 120.00510 * 180.02562 * 26 7 6 42 42 H 1.07998 * 119.99449 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 4.1990 0.4251 0.0016 6 6 5.5682 0.6054 0.0016 7 6 6.0991 1.8883 0.0011 8 7 7.4882 2.0719 0.0017 9 6 8.1513 3.3749 -0.1259 10 6 9.6015 3.1467 0.3610 11 1 9.6997 3.3652 1.4244 12 6 10.5732 3.9670 -0.4475 13 8 10.1617 4.7659 -1.2621 14 7 11.8998 3.8130 -0.2653 15 6 12.7839 4.5597 -1.0005 16 1 12.4174 5.2709 -1.7258 17 6 14.1515 4.4006 -0.8130 18 7 14.5974 3.5341 0.0686 19 14 15.3561 5.4174 -1.8151 20 1 15.1236 6.8605 -1.5530 21 1 16.7451 5.0613 -1.4293 22 1 15.1572 5.1384 -3.2600 23 6 9.7898 1.6366 0.0867 24 6 8.3847 1.0766 0.1134 25 8 8.1075 -0.0994 0.2203 26 6 5.2530 2.9891 0.0001 27 6 3.8842 2.8075 0.0000 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.7859 -0.5727 0.0016 34 1 6.2257 -0.2513 -0.0020 35 1 8.1466 3.7004 -1.1661 36 1 7.6552 4.1138 0.5035 37 1 12.2289 3.1740 0.3860 38 1 15.5521 3.4228 0.1993 39 1 10.3974 1.1799 0.8679 40 1 10.2442 1.4804 -0.8917 41 1 5.6655 3.9873 -0.0008 42 1 3.2260 3.6638 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749609171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:31 Heat of formation + Delta-G solvation = -80.004126 kcal Electronic energy + Delta-G solvation = -25638.295273 eV Core-core repulsion = 21776.647308 eV Total energy + Delta-G solvation = -3861.647965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.14421 -39.94868 -38.38524 -37.50113 -36.08246 -34.10912 -32.96274 -31.83461 -31.20246 -31.05791 -28.35893 -27.57925 -25.44062 -24.30207 -23.02856 -22.85907 -21.25907 -19.80685 -19.16061 -18.42409 -18.04428 -17.49277 -16.94110 -16.32174 -16.15066 -15.25830 -15.13111 -14.70170 -14.51664 -14.20485 -14.15449 -13.86038 -13.79803 -13.66340 -13.33809 -13.29234 -12.94300 -12.79265 -12.62199 -12.28918 -12.15739 -11.94295 -11.65007 -11.29883 -11.20899 -11.12445 -11.04561 -10.98048 -10.52706 -10.32076 -9.75002 -9.64161 -9.61363 -9.12256 -8.59678 -8.12702 -7.58413 -6.54711 -3.96487 1.19098 1.28435 2.61425 2.80553 3.04106 3.11416 3.20128 3.23734 3.65597 3.74492 4.03562 4.28423 4.50063 4.60215 4.61382 4.73020 4.79586 4.89367 4.92259 5.03724 5.07987 5.18140 5.21431 5.32532 5.36169 5.44539 5.50468 5.56397 5.67447 5.72974 5.84655 5.89870 5.98985 6.13483 6.18032 6.21066 6.31021 6.40648 6.84500 7.08785 7.29657 7.43246 7.89750 8.08682 8.42629 9.02318 9.36611 9.85450 10.61994 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038915 B = 0.002283 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.342333 B =12261.037736 C =12776.378307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.098 3.902 5 C -0.179 4.179 6 C -0.119 4.119 7 C 0.138 3.862 8 N -0.558 5.558 9 C 0.115 3.885 10 C -0.111 4.111 11 H 0.107 0.893 12 C 0.445 3.555 13 O -0.591 6.591 14 N -0.549 5.549 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.027 3.973 18 N -0.895 5.895 19 Si 0.932 3.068 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.143 4.143 24 C 0.522 3.478 25 O -0.520 6.520 26 C -0.117 4.117 27 C -0.123 4.123 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.129 0.871 34 H 0.158 0.842 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.395 0.605 38 H 0.275 0.725 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.239 -6.196 2.897 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.052 3.948 5 C -0.199 4.199 6 C -0.139 4.139 7 C 0.044 3.956 8 N -0.281 5.281 9 C -0.007 4.007 10 C -0.133 4.133 11 H 0.125 0.875 12 C 0.230 3.770 13 O -0.478 6.478 14 N -0.183 5.183 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.176 4.176 18 N -0.535 5.535 19 Si 0.759 3.241 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.184 4.184 24 C 0.312 3.688 25 O -0.397 6.397 26 C -0.138 4.138 27 C -0.142 4.142 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.175 0.825 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.228 0.772 38 H 0.085 0.915 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.154 0.846 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.563 -6.195 2.470 21.618 hybrid contribution 1.013 -0.078 -0.002 1.016 sum -19.550 -6.273 2.469 20.680 Atomic orbital electron populations 1.21769 0.92868 1.02759 1.03461 1.22747 0.95725 0.82260 1.01387 1.86051 1.19098 1.28969 1.89213 1.18932 0.82186 0.94126 0.99514 1.21113 0.93537 0.98022 1.07191 1.21463 0.95190 0.97132 1.00150 1.17730 0.81635 0.94180 1.02068 1.45926 1.03600 1.10039 1.68523 1.22205 0.91053 0.82993 1.04466 1.22150 0.94555 0.94565 1.02040 0.87524 1.19245 0.83208 0.87262 0.87297 1.90540 1.77900 1.40167 1.39146 1.41840 1.03897 1.36501 1.36097 1.19693 0.86286 1.18949 1.18610 0.87712 1.25308 0.97882 0.97264 0.97182 1.69593 1.15759 1.34447 1.33715 0.85889 0.78608 0.79813 0.79781 1.19772 1.20882 1.19778 1.22402 0.94306 0.95145 1.06511 1.21130 0.88267 0.84972 0.74458 1.90579 1.83279 1.16466 1.49385 1.20668 0.92104 0.98065 1.02957 1.20164 0.94236 0.94892 1.04940 0.90470 0.91571 0.91551 0.92115 0.92127 0.85338 0.82468 0.88028 0.89508 0.77175 0.91540 0.86922 0.86657 0.84622 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.15 0.38 -0.50 16 2 C 0.05 0.43 5.46 37.15 0.20 0.63 16 3 O -0.32 -3.53 10.14 -19.65 -0.20 -3.73 16 4 C 0.10 1.18 6.69 -39.22 -0.26 0.92 16 5 C -0.18 -2.17 9.03 -39.45 -0.36 -2.53 16 6 C -0.12 -1.69 9.28 -39.41 -0.37 -2.05 16 7 C 0.14 1.96 6.60 -83.62 -0.55 1.41 16 8 N -0.56 -8.23 3.14 -112.12 -0.35 -8.58 16 9 C 0.11 1.65 5.82 -3.02 -0.02 1.64 16 10 C -0.11 -1.72 3.56 -90.04 -0.32 -2.04 16 11 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 12 C 0.44 9.40 7.02 -10.99 -0.08 9.32 16 13 O -0.59 -14.51 15.14 5.55 0.08 -14.43 16 14 N -0.55 -12.74 5.24 -10.96 -0.06 -12.80 16 15 C -0.31 -7.99 9.68 -14.93 -0.14 -8.13 16 16 H 0.11 2.86 7.16 -52.49 -0.38 2.49 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 18 N -0.90 -23.08 13.05 55.50 0.72 -22.36 16 19 Si 0.93 20.06 29.55 -169.99 -5.02 15.04 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 C -0.14 -2.12 6.37 -26.74 -0.17 -2.29 16 24 C 0.52 8.29 7.92 -10.86 -0.09 8.20 16 25 O -0.52 -9.29 14.81 5.55 0.08 -9.21 16 26 C -0.12 -1.44 9.41 -39.42 -0.37 -1.82 16 27 C -0.12 -1.44 9.98 -39.46 -0.39 -1.83 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 32 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 33 H 0.13 1.27 6.29 -52.49 -0.33 0.94 16 34 H 0.16 2.43 5.25 -52.49 -0.28 2.15 16 35 H 0.10 1.64 7.07 -51.93 -0.37 1.27 16 36 H 0.09 1.07 7.22 -51.93 -0.38 0.69 16 37 H 0.39 8.74 7.90 -40.82 -0.32 8.42 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.12 1.81 7.89 -51.93 -0.41 1.40 16 41 H 0.14 1.45 6.74 -52.48 -0.35 1.09 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -30.67 352.91 -7.33 -38.00 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -5.28 Total: 11.26 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.63 Total: 1.50 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.31 Total: -43.74 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.03 Total: -27.37 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.67 -7.33 -38.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749609171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.002 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds