Wall clock time and date at job start Tue Mar 31 2020 13:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42906 * 109.47090 * 2 1 4 4 C 1.35972 * 116.99933 * 179.97438 * 3 2 1 5 5 C 1.38722 * 119.98519 * 359.97438 * 4 3 2 6 6 C 1.38097 * 120.01318 * 179.97438 * 5 4 3 7 7 C 1.38845 * 119.98289 * 0.02562 * 6 5 4 8 8 N 1.40116 * 120.01035 * 179.97438 * 7 6 5 9 9 C 1.46765 * 124.34786 * 173.97985 * 8 7 6 10 10 C 1.54662 * 105.38191 * 162.85168 * 9 8 7 11 11 H 1.09000 * 111.22590 * 267.58223 * 10 9 8 12 12 C 1.50695 * 110.81737 * 143.77441 * 10 9 8 13 13 O 1.21294 * 120.00634 * 6.35569 * 12 10 9 14 14 N 1.34782 * 119.99671 * 186.34832 * 12 10 9 15 15 C 1.37103 * 119.99678 * 180.02562 * 14 12 10 16 16 H 1.07993 * 120.00264 * 359.97438 * 15 14 12 17 17 C 1.38954 * 119.99703 * 180.02562 * 15 14 12 18 18 N 1.31408 * 119.99950 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99915 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46714 * 60.00555 * 19 17 15 21 21 H 1.48497 * 109.46904 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47394 * 300.00191 * 19 17 15 23 23 C 1.54631 * 101.68063 * 25.76678 * 10 9 8 24 24 C 1.34421 * 124.35080 * 354.27636 * 8 7 6 25 25 O 1.21293 * 124.93926 * 0.39507 * 24 8 7 26 26 C 1.38840 * 119.97213 * 359.97438 * 7 6 5 27 27 C 1.38085 * 119.98878 * 0.02562 * 26 7 6 28 28 H 1.09000 * 109.47383 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47594 * 300.00487 * 1 2 3 30 30 H 1.09009 * 109.46827 * 60.00321 * 1 2 3 31 31 H 1.09000 * 109.47869 * 239.99958 * 2 1 3 32 32 H 1.09006 * 109.47104 * 119.99237 * 2 1 3 33 33 H 1.08002 * 119.99443 * 0.02562 * 5 4 3 34 34 H 1.07999 * 120.00596 * 180.27494 * 6 5 4 35 35 H 1.08994 * 110.24694 * 281.98314 * 9 8 7 36 36 H 1.08998 * 110.24284 * 43.98245 * 9 8 7 37 37 H 0.96998 * 119.99863 * 0.02562 * 14 12 10 38 38 H 0.97000 * 120.00241 * 179.97438 * 18 17 15 39 39 H 1.09000 * 110.48450 * 216.30489 * 23 10 9 40 40 H 1.09001 * 110.48485 * 93.66308 * 23 10 9 41 41 H 1.08003 * 120.00510 * 180.02562 * 26 7 6 42 42 H 1.07998 * 119.99449 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 4.1990 0.4251 0.0016 6 6 5.5682 0.6054 0.0016 7 6 6.0991 1.8883 0.0011 8 7 7.4882 2.0719 0.0017 9 6 8.1513 3.3749 -0.1259 10 6 9.6015 3.1467 0.3610 11 1 9.6997 3.3652 1.4244 12 6 10.5732 3.9670 -0.4475 13 8 10.1617 4.7659 -1.2621 14 7 11.8998 3.8130 -0.2653 15 6 12.7839 4.5597 -1.0005 16 1 12.4174 5.2709 -1.7258 17 6 14.1515 4.4006 -0.8130 18 7 14.5974 3.5341 0.0686 19 14 15.3561 5.4174 -1.8151 20 1 15.1236 6.8605 -1.5530 21 1 16.7451 5.0613 -1.4293 22 1 15.1572 5.1384 -3.2600 23 6 9.7898 1.6366 0.0867 24 6 8.3847 1.0766 0.1134 25 8 8.1075 -0.0994 0.2203 26 6 5.2530 2.9891 0.0001 27 6 3.8842 2.8075 0.0000 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.7859 -0.5727 0.0016 34 1 6.2257 -0.2513 -0.0020 35 1 8.1466 3.7004 -1.1661 36 1 7.6552 4.1138 0.5035 37 1 12.2289 3.1740 0.3860 38 1 15.5521 3.4228 0.1993 39 1 10.3974 1.1799 0.8679 40 1 10.2442 1.4804 -0.8917 41 1 5.6655 3.9873 -0.0008 42 1 3.2260 3.6638 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749609171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:30 Heat of formation + Delta-G solvation = -98.819477 kcal Electronic energy + Delta-G solvation = -25639.111167 eV Core-core repulsion = 21776.647308 eV Total energy + Delta-G solvation = -3862.463860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32828 -40.90993 -40.00666 -38.50496 -37.37632 -35.97916 -34.11397 -33.16320 -32.46914 -31.95598 -29.44748 -28.79300 -27.16947 -25.23422 -24.08706 -24.00262 -22.24658 -20.97496 -20.74493 -19.86795 -19.29267 -18.67930 -18.32005 -17.30008 -17.03189 -16.85026 -16.25819 -16.12773 -15.95442 -15.72814 -15.40302 -15.07847 -14.77063 -14.69174 -14.51625 -14.31692 -14.12649 -13.98715 -13.65383 -13.42789 -13.23014 -13.08198 -12.91562 -12.68414 -12.50920 -12.42044 -12.34725 -12.09810 -11.92086 -11.79747 -11.50627 -10.91183 -10.74287 -10.34666 -10.07852 -10.02664 -8.61417 -8.46693 -5.95329 0.20117 0.28745 1.40242 1.42570 1.45095 1.54586 1.67121 1.97371 2.27569 2.30316 2.75390 2.90579 3.16182 3.23197 3.44995 3.77764 3.84769 3.90157 3.99907 4.06712 4.10439 4.20179 4.35330 4.38484 4.41520 4.47527 4.51331 4.56720 4.71362 4.78012 4.93578 4.95797 4.96624 5.01485 5.16422 5.21699 5.34783 5.42316 5.43356 5.81078 5.94934 5.98864 6.43995 6.55916 6.87990 7.10663 7.53091 8.05788 8.69618 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038915 B = 0.002283 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.342333 B =12261.037736 C =12776.378307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.328 6.328 4 C 0.098 3.902 5 C -0.180 4.180 6 C -0.134 4.134 7 C 0.111 3.889 8 N -0.552 5.552 9 C 0.120 3.880 10 C -0.099 4.099 11 H 0.138 0.862 12 C 0.451 3.549 13 O -0.626 6.626 14 N -0.560 5.560 15 C -0.335 4.335 16 H 0.084 0.916 17 C -0.009 4.009 18 N -0.915 5.915 19 Si 0.990 3.010 20 H -0.271 1.271 21 H -0.274 1.274 22 H -0.273 1.273 23 C -0.136 4.136 24 C 0.519 3.481 25 O -0.545 6.545 26 C -0.113 4.113 27 C -0.125 4.125 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.399 0.601 38 H 0.278 0.722 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.153 0.847 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.545 -6.057 3.498 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.243 6.243 4 C 0.052 3.948 5 C -0.199 4.199 6 C -0.154 4.154 7 C 0.019 3.981 8 N -0.275 5.275 9 C -0.002 4.002 10 C -0.120 4.120 11 H 0.155 0.845 12 C 0.238 3.762 13 O -0.513 6.513 14 N -0.195 5.195 15 C -0.465 4.465 16 H 0.102 0.898 17 C -0.210 4.210 18 N -0.555 5.555 19 Si 0.814 3.186 20 H -0.196 1.196 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.177 4.177 24 C 0.309 3.691 25 O -0.424 6.424 26 C -0.133 4.133 27 C -0.144 4.144 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.233 0.767 38 H 0.088 0.912 39 H 0.150 0.850 40 H 0.122 0.878 41 H 0.170 0.830 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.898 -6.059 3.081 22.929 hybrid contribution 1.227 -0.150 -0.209 1.254 sum -20.671 -6.209 2.872 21.774 Atomic orbital electron populations 1.21796 0.91291 1.04124 1.03285 1.23052 0.97024 0.80976 1.02079 1.86059 1.18316 1.30981 1.88903 1.19095 0.82790 0.94265 0.98632 1.21266 0.92750 0.99218 1.06631 1.21407 0.95903 0.96726 1.01347 1.17958 0.81430 0.94924 1.03834 1.45883 1.03950 1.09647 1.68045 1.22152 0.90574 0.83470 1.03977 1.22041 0.93521 0.93893 1.02578 0.84453 1.20083 0.83202 0.86445 0.86440 1.90521 1.78532 1.41684 1.40595 1.41876 1.04464 1.36774 1.36395 1.19665 0.87462 1.19853 1.19471 0.89821 1.26008 0.98867 0.98100 0.97982 1.69652 1.16214 1.35185 1.34455 0.85022 0.76899 0.78397 0.78273 1.19574 1.19834 1.19815 1.22353 0.94171 0.94521 1.06623 1.21217 0.88672 0.84841 0.74350 1.90573 1.83620 1.17410 1.50762 1.20858 0.92211 0.98222 1.02016 1.20463 0.94292 0.95606 1.04040 0.88351 0.91687 0.91767 0.91481 0.91360 0.83498 0.84168 0.89813 0.86765 0.76665 0.91230 0.85018 0.87798 0.82970 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 71.98 0.74 -0.67 16 2 C 0.04 0.60 5.46 71.98 0.39 0.99 16 3 O -0.33 -6.64 10.14 -93.23 -0.95 -7.59 16 4 C 0.10 2.20 6.69 22.50 0.15 2.35 16 5 C -0.18 -4.15 9.03 22.35 0.20 -3.94 16 6 C -0.13 -3.74 9.28 22.38 0.21 -3.53 16 7 C 0.11 3.08 6.60 38.11 0.25 3.33 16 8 N -0.55 -15.83 3.14 -627.23 -1.97 -17.80 16 9 C 0.12 3.30 5.82 86.90 0.51 3.81 16 10 C -0.10 -2.94 3.56 -10.42 -0.04 -2.97 16 11 H 0.14 3.34 8.14 -2.39 -0.02 3.32 16 12 C 0.45 19.03 7.02 87.65 0.62 19.64 16 13 O -0.63 -31.00 15.14 -3.07 -0.05 -31.04 16 14 N -0.56 -26.16 5.24 -306.98 -1.61 -27.77 16 15 C -0.34 -17.76 9.68 84.04 0.81 -16.94 16 16 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 17 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 18 N -0.91 -46.97 13.05 21.66 0.28 -46.68 16 19 Si 0.99 40.97 29.55 68.60 2.03 43.00 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 C -0.14 -3.94 6.37 30.59 0.19 -3.74 16 24 C 0.52 16.28 7.92 87.90 0.70 16.98 16 25 O -0.54 -19.59 14.81 -3.07 -0.05 -19.64 16 26 C -0.11 -2.58 9.41 22.38 0.21 -2.37 16 27 C -0.13 -2.66 9.98 22.35 0.22 -2.44 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 32 H 0.07 0.84 7.66 -2.38 -0.02 0.82 16 33 H 0.15 2.69 6.29 -2.91 -0.02 2.68 16 34 H 0.14 4.42 5.25 -2.91 -0.02 4.41 16 35 H 0.08 2.66 7.07 -2.39 -0.02 2.64 16 36 H 0.11 2.52 7.22 -2.39 -0.02 2.51 16 37 H 0.40 17.68 7.90 -92.71 -0.73 16.95 16 38 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 39 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.10 3.27 7.89 -2.39 -0.02 3.26 16 41 H 0.15 2.88 6.74 -2.91 -0.02 2.86 16 42 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -66.35 352.91 3.66 -62.69 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 0.33 Total: 34.32 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 5.63 Total: 10.50 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -3.30 Total: -92.25 kcal Atomic # 8 Polarization: -57.23 SS G_CDS: -1.04 Total: -58.26 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -66.35 3.66 -62.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749609171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.127 kcal (2) G-P(sol) polarization free energy of solvation -66.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds