Wall clock time and date at job start Tue Mar 31 2020 13:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47103 * 2 1 4 4 C 1.35966 * 116.99792 * 180.02562 * 3 2 1 5 5 C 1.38723 * 119.98718 * 0.29577 * 4 3 2 6 6 C 1.38087 * 120.01297 * 180.25581 * 5 4 3 7 7 C 1.38848 * 119.98707 * 359.44819 * 6 5 4 8 8 N 1.40112 * 120.01566 * 180.25361 * 7 6 5 9 9 C 1.46766 * 124.34713 * 173.98709 * 8 7 6 10 10 C 1.54662 * 105.37794 * 162.85902 * 9 8 7 11 11 H 1.08996 * 110.82100 * 143.77732 * 10 9 8 12 12 C 1.50701 * 111.22094 * 267.57809 * 10 9 8 13 13 O 1.21294 * 120.00339 * 353.88127 * 12 10 9 14 14 N 1.34774 * 119.99989 * 173.88700 * 12 10 9 15 15 C 1.37103 * 120.00299 * 180.02562 * 14 12 10 16 16 H 1.07998 * 119.99636 * 359.97438 * 15 14 12 17 17 C 1.38947 * 119.99939 * 179.97438 * 15 14 12 18 18 N 1.31406 * 120.00392 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99664 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46815 * 90.00301 * 19 17 15 21 21 H 1.48498 * 109.47068 * 210.00192 * 19 17 15 22 22 H 1.48501 * 109.47048 * 330.00154 * 19 17 15 23 23 C 1.54619 * 101.68694 * 25.76557 * 10 9 8 24 24 C 1.34421 * 124.35115 * 354.28967 * 8 7 6 25 25 O 1.21295 * 124.93661 * 0.42679 * 24 8 7 26 26 C 1.38843 * 119.97053 * 0.27402 * 7 6 5 27 27 C 1.38090 * 119.98397 * 0.02562 * 26 7 6 28 28 H 1.08994 * 109.47058 * 59.99940 * 1 2 3 29 29 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46921 * 299.99947 * 1 2 3 31 31 H 1.08994 * 109.47067 * 239.99779 * 2 1 3 32 32 H 1.09002 * 109.46902 * 119.99776 * 2 1 3 33 33 H 1.07999 * 119.99520 * 0.02562 * 5 4 3 34 34 H 1.08005 * 120.00752 * 179.72422 * 6 5 4 35 35 H 1.09004 * 110.24804 * 281.98315 * 9 8 7 36 36 H 1.08992 * 110.24653 * 43.98657 * 9 8 7 37 37 H 0.97002 * 119.99868 * 359.97438 * 14 12 10 38 38 H 0.96996 * 120.00303 * 179.97438 * 18 17 15 39 39 H 1.09001 * 110.48855 * 216.31206 * 23 10 9 40 40 H 1.08995 * 110.48545 * 93.67051 * 23 10 9 41 41 H 1.08001 * 120.01007 * 180.02562 * 26 7 6 42 42 H 1.08005 * 119.99203 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3543 1.5253 -0.0005 5 6 4.1990 0.4250 -0.0073 6 6 5.5681 0.6052 -0.0025 7 6 6.0992 1.8881 -0.0025 8 7 7.4882 2.0717 -0.0030 9 6 8.1512 3.3749 -0.1301 10 6 9.6018 3.1461 0.3552 11 1 10.3042 3.7399 -0.2297 12 6 9.7390 3.4470 1.8255 13 8 8.8052 3.9213 2.4373 14 7 10.8994 3.1892 2.4606 15 6 11.0241 3.4624 3.7984 16 1 10.1926 3.8846 4.3430 17 6 12.2203 3.1961 4.4532 18 7 13.2322 2.6829 3.7904 19 14 12.3904 3.5691 6.2757 20 1 11.9812 2.3794 7.0647 21 1 13.8042 3.9041 6.5826 22 1 11.5211 4.7201 6.6287 23 6 9.7899 1.6364 0.0794 24 6 8.3849 1.0763 0.1069 25 8 8.1076 -0.0998 0.2124 26 6 5.2531 2.9890 -0.0016 27 6 3.8842 2.8074 -0.0001 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.7859 -0.5728 -0.0125 34 1 6.2257 -0.2515 -0.0032 35 1 8.1455 3.7013 -1.1701 36 1 7.6558 4.1132 0.5004 37 1 11.6461 2.8096 1.9715 38 1 14.0674 2.4973 4.2474 39 1 10.3982 1.1789 0.8597 40 1 10.2434 1.4810 -0.8994 41 1 5.6655 3.9872 -0.0021 42 1 3.2260 3.6637 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749609172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:33 Heat of formation + Delta-G solvation = -100.138901 kcal Electronic energy + Delta-G solvation = -26086.607471 eV Core-core repulsion = 22224.086397 eV Total energy + Delta-G solvation = -3862.521074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.32510 -40.92129 -39.92424 -38.49165 -37.32983 -35.98100 -34.11901 -33.16818 -32.46551 -31.95886 -29.40424 -28.73372 -27.21413 -25.22533 -24.08210 -24.01504 -22.35294 -20.92923 -20.73865 -19.91742 -19.29978 -18.64290 -18.32633 -17.13115 -17.06446 -16.94714 -16.40810 -16.13416 -15.91136 -15.56098 -15.45075 -15.09643 -14.79382 -14.63658 -14.53765 -14.32820 -14.12524 -13.82907 -13.55139 -13.35418 -13.13203 -13.03403 -12.93842 -12.77605 -12.69897 -12.48748 -12.33681 -12.12817 -11.91744 -11.80924 -11.53945 -10.80364 -10.68820 -10.37252 -10.08247 -10.04078 -8.59018 -8.49359 -5.97694 0.21507 0.28297 1.35367 1.40877 1.45139 1.52555 1.81701 1.97328 2.26947 2.27441 2.76091 3.03285 3.12369 3.20722 3.42036 3.79217 3.82587 3.89191 4.05185 4.11537 4.18489 4.21411 4.35159 4.37148 4.47707 4.49200 4.56457 4.61637 4.74661 4.82096 4.89397 4.94587 4.97186 5.00876 5.18011 5.20681 5.33741 5.39703 5.43947 5.82944 5.96310 6.03196 6.43172 6.55015 6.92881 7.09343 7.52085 8.06504 8.67323 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019709 B = 0.002777 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.304143 B =10081.014668 C =10520.775015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.327 6.327 4 C 0.096 3.904 5 C -0.180 4.180 6 C -0.139 4.139 7 C 0.114 3.886 8 N -0.552 5.552 9 C 0.112 3.888 10 C -0.102 4.102 11 H 0.164 0.836 12 C 0.439 3.561 13 O -0.629 6.629 14 N -0.563 5.563 15 C -0.335 4.335 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.914 5.914 19 Si 0.988 3.012 20 H -0.276 1.276 21 H -0.268 1.268 22 H -0.272 1.272 23 C -0.135 4.135 24 C 0.506 3.494 25 O -0.556 6.556 26 C -0.113 4.113 27 C -0.126 4.126 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.399 0.601 38 H 0.279 0.721 39 H 0.094 0.906 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.355 -2.121 -13.463 20.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.242 6.242 4 C 0.050 3.950 5 C -0.199 4.199 6 C -0.159 4.159 7 C 0.021 3.979 8 N -0.274 5.274 9 C -0.010 4.010 10 C -0.124 4.124 11 H 0.181 0.819 12 C 0.227 3.773 13 O -0.516 6.516 14 N -0.199 5.199 15 C -0.464 4.464 16 H 0.095 0.905 17 C -0.210 4.210 18 N -0.554 5.554 19 Si 0.812 3.188 20 H -0.202 1.202 21 H -0.193 1.193 22 H -0.197 1.197 23 C -0.175 4.175 24 C 0.297 3.703 25 O -0.436 6.436 26 C -0.133 4.133 27 C -0.145 4.145 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.234 0.766 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.179 0.821 41 H 0.169 0.831 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.048 -2.318 -12.935 20.742 hybrid contribution 0.826 -0.427 1.072 1.419 sum -15.222 -2.745 -11.863 19.493 Atomic orbital electron populations 1.21792 0.91123 1.04156 1.03319 1.23055 0.97132 0.81006 1.01999 1.86048 1.18211 1.30962 1.88968 1.19059 0.82800 0.94203 0.98900 1.21250 0.92735 0.99211 1.06725 1.21415 0.95982 0.96822 1.01729 1.17979 0.81955 0.94806 1.03184 1.45867 1.03777 1.10064 1.67715 1.22436 0.90753 0.83714 1.04053 1.22248 0.99405 0.97481 0.93251 0.81877 1.20598 0.83021 0.83478 0.90243 1.90514 1.40643 1.51205 1.69275 1.41871 1.13028 1.55681 1.09345 1.19627 0.99429 1.41334 0.86035 0.90471 1.25976 0.94471 0.96259 1.04250 1.69642 1.03992 1.43250 1.38551 0.85002 0.77909 0.78571 0.77339 1.20158 1.19288 1.19696 1.22447 0.93189 0.94244 1.07666 1.21588 0.89581 0.84920 0.74194 1.90553 1.83951 1.18013 1.51068 1.20848 0.92267 0.98185 1.02027 1.20466 0.94276 0.95625 1.04103 0.91462 0.88295 0.91895 0.91178 0.91870 0.83547 0.84399 0.85006 0.89237 0.76605 0.91189 0.88757 0.82142 0.83137 0.82753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.04 0.70 5.46 71.98 0.39 1.09 16 3 O -0.33 -7.57 10.14 -93.17 -0.94 -8.51 16 4 C 0.10 2.50 6.69 22.50 0.15 2.65 16 5 C -0.18 -4.86 9.03 22.35 0.20 -4.66 16 6 C -0.14 -4.51 9.28 22.38 0.21 -4.31 16 7 C 0.11 3.65 6.60 38.11 0.25 3.90 16 8 N -0.55 -17.56 3.14 -627.22 -1.97 -19.53 16 9 C 0.11 2.90 5.91 86.90 0.51 3.41 16 10 C -0.10 -2.91 3.54 -10.42 -0.04 -2.95 16 11 H 0.16 3.19 8.14 -2.39 -0.02 3.17 16 12 C 0.44 19.25 7.12 87.66 0.62 19.87 16 13 O -0.63 -32.88 15.11 -3.07 -0.05 -32.92 16 14 N -0.56 -27.30 5.01 -306.98 -1.54 -28.84 16 15 C -0.33 -18.49 9.68 84.04 0.81 -17.68 16 16 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 17 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 18 N -0.91 -47.92 13.05 21.66 0.28 -47.63 16 19 Si 0.99 42.46 29.55 68.60 2.03 44.48 16 20 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 C -0.14 -3.76 6.38 30.58 0.20 -3.57 16 24 C 0.51 17.61 7.92 87.90 0.70 18.31 16 25 O -0.56 -22.68 14.81 -3.08 -0.05 -22.73 16 26 C -0.11 -3.06 9.41 22.38 0.21 -2.85 16 27 C -0.13 -3.14 9.98 22.35 0.22 -2.92 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.01 7.64 -2.39 -0.02 0.99 16 32 H 0.06 1.00 7.67 -2.39 -0.02 0.99 16 33 H 0.15 3.22 6.29 -2.91 -0.02 3.20 16 34 H 0.14 4.99 5.25 -2.91 -0.02 4.98 16 35 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.09 2.68 6.06 -2.39 -0.01 2.66 16 37 H 0.40 18.11 7.72 -92.71 -0.72 17.40 16 38 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 39 H 0.09 3.07 7.51 -2.39 -0.02 3.05 16 40 H 0.16 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.15 3.48 6.74 -2.91 -0.02 3.46 16 42 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -74.59 352.17 3.77 -70.83 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.35 Total: 35.50 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.65 Total: 9.35 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -3.23 Total: -96.00 kcal Atomic # 8 Polarization: -63.13 SS G_CDS: -1.04 Total: -64.17 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -74.59 3.77 -70.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749609172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.313 kcal (2) G-P(sol) polarization free energy of solvation -74.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds