Wall clock time and date at job start Tue Mar 31 2020 12:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.27948 * 2 1 4 4 C 1.50689 * 109.37506 * 119.70765 * 2 1 3 5 5 O 1.21297 * 120.32123 * 265.14744 * 4 2 1 6 6 N 1.35155 * 119.36222 * 85.42089 * 4 2 1 7 7 C 1.40360 * 118.50539 * 0.25746 * 6 4 2 8 8 C 1.38010 * 120.38618 * 198.51951 * 7 6 4 9 9 C 1.39887 * 119.76527 * 180.02562 * 8 7 6 10 10 C 1.47381 * 120.08675 * 179.97438 * 9 8 7 11 11 O 1.21519 * 120.00523 * 359.97438 * 10 9 8 12 12 O 1.34766 * 119.99908 * 179.97438 * 10 9 8 13 13 C 1.45205 * 116.99714 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46730 * 179.97438 * 13 12 10 15 15 C 1.50704 * 109.47264 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99280 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00161 * 180.02562 * 15 14 13 18 18 N 1.31523 * 120.00050 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00037 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47187 * 90.00525 * 19 17 15 21 21 H 1.48504 * 109.47001 * 209.99975 * 19 17 15 22 22 H 1.48495 * 109.46884 * 330.00026 * 19 17 15 23 23 C 1.39832 * 119.82309 * 359.97438 * 9 8 7 24 24 C 1.37662 * 120.14937 * 0.06498 * 23 9 8 25 25 C 1.39137 * 120.17479 * 359.97438 * 24 23 9 26 26 N 1.39045 * 119.97499 * 179.86631 * 25 24 23 27 27 C 1.46905 * 110.99957 * 19.49067 * 26 25 24 28 28 H 1.08997 * 109.47568 * 300.28851 * 1 2 3 29 29 H 1.08998 * 109.47399 * 60.29485 * 1 2 3 30 30 H 1.09004 * 109.47073 * 180.29218 * 1 2 3 31 31 H 0.97002 * 120.74746 * 180.50601 * 6 4 2 32 32 H 1.08003 * 120.11642 * 0.03308 * 8 7 6 33 33 H 1.09002 * 109.47237 * 299.99733 * 13 12 10 34 34 H 1.08993 * 109.47242 * 60.00063 * 13 12 10 35 35 H 1.08997 * 109.47266 * 300.00347 * 14 13 12 36 36 H 1.09005 * 109.47433 * 60.00277 * 14 13 12 37 37 H 0.97000 * 120.00046 * 180.02562 * 18 17 15 38 38 H 1.07998 * 119.92447 * 180.02562 * 23 9 8 39 39 H 1.07993 * 119.91289 * 179.97438 * 24 23 9 40 40 H 1.08997 * 109.46875 * 177.52208 * 27 26 25 41 41 H 1.09000 * 109.46926 * 297.52223 * 27 26 25 42 42 H 1.09000 * 109.47022 * 57.52048 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8899 1.0288 0.0000 4 6 2.0299 -0.7045 1.2347 5 8 2.3166 -0.0700 2.2280 6 7 2.1610 -2.0496 1.2229 7 6 1.8291 -2.7447 0.0496 8 6 1.5775 -4.1011 0.0893 9 6 1.2483 -4.7811 -1.0880 10 6 0.9787 -6.2297 -1.0539 11 8 1.0428 -6.8351 -0.0022 12 8 0.6612 -6.8829 -2.1891 13 6 0.4093 -8.3088 -2.0806 14 6 0.0663 -8.8725 -3.4610 15 6 -0.1946 -10.3525 -3.3487 16 1 -0.1233 -10.8420 -2.3886 17 6 -0.5243 -11.0816 -4.4715 18 7 -0.7524 -12.3731 -4.3733 19 14 -0.6468 -10.2350 -6.1321 20 1 0.6773 -10.2681 -6.8035 21 1 -1.6465 -10.9397 -6.9744 22 1 -1.0688 -8.8245 -5.9387 23 6 1.1756 -4.0828 -2.2973 24 6 1.4284 -2.7300 -2.3308 25 6 1.7569 -2.0508 -1.1618 26 7 2.0142 -0.6849 -1.2009 27 6 1.4539 -0.0782 -2.4159 28 1 -0.3634 0.5183 0.8873 29 1 -0.3634 0.5092 -0.8926 30 1 -0.3633 -1.0277 0.0052 31 1 2.4740 -2.5243 2.0088 32 1 1.6344 -4.6357 1.0260 33 1 1.2991 -8.8068 -1.6953 34 1 -0.4256 -8.4796 -1.4011 35 1 -0.8236 -8.3745 -3.8460 36 1 0.9010 -8.7017 -4.1410 37 1 -0.9840 -12.8862 -5.1633 38 1 0.9212 -4.6061 -3.2072 39 1 1.3716 -2.1946 -3.2669 40 1 1.6310 0.9971 -2.3998 41 1 1.9335 -0.5124 -3.2931 42 1 0.3816 -0.2693 -2.4561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750568213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:53 Heat of formation + Delta-G solvation = -81.482850 kcal Electronic energy + Delta-G solvation = -25897.108730 eV Core-core repulsion = 22035.396643 eV Total energy + Delta-G solvation = -3861.712087 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06272 -40.13287 -39.04582 -37.52404 -36.16409 -35.57863 -33.33925 -32.20178 -30.83654 -30.35510 -29.58518 -27.67903 -25.59510 -24.42800 -23.63699 -22.76546 -21.55818 -20.68124 -19.36623 -18.93632 -18.24942 -17.21763 -16.64135 -16.52300 -16.22700 -16.11195 -16.00638 -15.49550 -15.06262 -14.67970 -14.63691 -14.22633 -13.94728 -13.76323 -13.54436 -13.35111 -13.10303 -12.90297 -12.66213 -12.54022 -12.43772 -12.12760 -11.62204 -11.58482 -11.29358 -11.08170 -10.74661 -10.69549 -10.60684 -10.42646 -10.05324 -9.96595 -9.74041 -9.37799 -8.96385 -8.64813 -8.07763 -6.15167 -4.16638 0.36946 0.82577 1.87614 2.44884 2.56058 2.97862 3.04512 3.25600 3.33108 3.36430 3.50501 3.64234 4.06748 4.25552 4.35999 4.37542 4.60492 4.68211 4.74656 4.82779 4.88349 4.89676 5.03509 5.06688 5.18272 5.20208 5.33553 5.40368 5.44272 5.71885 5.92859 5.94102 5.99774 6.09257 6.11558 6.19233 6.40916 6.44375 6.70370 6.71347 7.13942 7.18357 7.46080 7.59552 8.04390 8.37148 8.86536 9.44103 10.97385 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025941 B = 0.002511 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.094016 B =11150.453204 C =11983.445897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.067 3.933 3 H 0.131 0.869 4 C 0.531 3.469 5 O -0.517 6.517 6 N -0.657 5.657 7 C 0.102 3.898 8 C -0.059 4.059 9 C -0.117 4.117 10 C 0.504 3.496 11 O -0.512 6.512 12 O -0.355 6.355 13 C 0.083 3.917 14 C -0.009 4.009 15 C -0.528 4.528 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.882 3.118 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.263 1.263 23 C -0.046 4.046 24 C -0.150 4.150 25 C 0.115 3.885 26 N -0.482 5.482 27 C 0.016 3.984 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.417 0.583 32 H 0.146 0.854 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 28.572 4.349 29.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.042 4.042 3 H 0.149 0.851 4 C 0.318 3.682 5 O -0.391 6.391 6 N -0.304 5.304 7 C 0.005 3.995 8 C -0.080 4.080 9 C -0.120 4.120 10 C 0.349 3.651 11 O -0.402 6.402 12 O -0.272 6.272 13 C 0.011 3.989 14 C -0.046 4.046 15 C -0.566 4.566 16 H 0.094 0.906 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.709 3.291 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.065 4.065 24 C -0.172 4.172 25 C 0.013 3.987 26 N -0.196 5.196 27 C -0.129 4.129 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.257 0.743 32 H 0.164 0.836 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.200 28.850 4.982 29.577 hybrid contribution -0.545 -0.302 -0.440 0.763 sum 3.654 28.549 4.541 29.138 Atomic orbital electron populations 1.22446 0.93347 1.04003 1.04531 1.22028 0.96025 0.99741 0.86430 0.85140 1.20558 0.76518 0.81766 0.89364 1.90804 1.48163 1.65193 1.34896 1.43702 1.65070 1.07202 1.14415 1.17180 1.05622 0.91746 0.84945 1.20650 0.97090 0.91300 0.98989 1.18933 1.07936 0.90846 0.94238 1.20859 0.73951 0.87834 0.82486 1.90829 1.48432 1.69046 1.31874 1.86527 1.78790 1.27236 1.34628 1.23430 1.00934 0.72758 1.01793 1.19629 0.97382 0.96731 0.90893 1.20837 1.48599 0.90234 0.96916 0.90637 1.24943 0.94264 0.94689 0.99147 1.69899 1.47056 1.06406 1.30100 0.86742 0.78310 0.80302 0.83793 1.20051 1.21200 1.18740 1.21418 0.93929 0.93322 0.97862 1.20962 1.04203 0.94845 0.97154 1.18796 0.97887 0.89355 0.92652 1.58426 1.56199 1.00888 1.04099 1.22680 0.98957 1.00594 0.90693 0.90285 0.89996 0.91373 0.74313 0.83586 0.91545 0.91545 0.95344 0.95755 0.92415 0.83365 0.83812 0.89889 0.89381 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 8.47 37.16 0.31 -0.72 16 2 C 0.07 0.47 2.92 -69.10 -0.20 0.27 16 3 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.53 5.24 7.17 -10.82 -0.08 5.16 16 5 O -0.52 -6.63 17.96 5.54 0.10 -6.53 16 6 N -0.66 -5.96 5.49 -9.65 -0.05 -6.01 16 7 C 0.10 0.98 6.17 -83.45 -0.51 0.46 16 8 C -0.06 -0.64 9.48 -39.05 -0.37 -1.01 16 9 C -0.12 -1.45 5.88 -104.96 -0.62 -2.07 16 10 C 0.50 8.29 7.89 34.45 0.27 8.56 16 11 O -0.51 -9.66 16.13 -19.28 -0.31 -9.97 16 12 O -0.36 -6.39 9.46 -40.67 -0.38 -6.78 16 13 C 0.08 1.72 5.42 37.16 0.20 1.92 16 14 C -0.01 -0.21 4.42 -27.88 -0.12 -0.33 16 15 C -0.53 -14.72 9.66 -34.44 -0.33 -15.06 16 16 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 19 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 23 C -0.05 -0.46 9.60 -39.20 -0.38 -0.84 16 24 C -0.15 -1.20 8.95 -39.46 -0.35 -1.55 16 25 C 0.11 0.98 5.06 -83.67 -0.42 0.56 16 26 N -0.48 -3.42 4.85 -172.85 -0.84 -4.26 16 27 C 0.02 0.07 7.67 60.07 0.46 0.53 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.31 6.46 -51.93 -0.34 -0.03 16 30 H 0.07 0.47 7.28 -51.93 -0.38 0.09 16 31 H 0.42 3.23 8.90 -40.82 -0.36 2.87 16 32 H 0.15 1.53 7.65 -52.48 -0.40 1.13 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 36 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.15 1.44 7.59 -52.49 -0.40 1.05 16 39 H 0.14 0.77 5.91 -52.49 -0.31 0.46 16 40 H 0.08 0.21 8.10 -51.93 -0.42 -0.21 16 41 H 0.09 0.30 6.68 -51.93 -0.35 -0.05 16 42 H 0.05 0.19 6.57 -51.93 -0.34 -0.16 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -33.81 349.05 -7.70 -41.51 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.34 Total: -1.04 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.24 Total: -2.18 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.12 Total: -36.52 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.60 Total: -23.28 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.81 -7.70 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750568213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.970 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds