Wall clock time and date at job start Tue Mar 31 2020 12:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.27948 * 2 1 4 4 C 1.50689 * 109.37506 * 119.70765 * 2 1 3 5 5 O 1.21297 * 120.32123 * 265.14744 * 4 2 1 6 6 N 1.35155 * 119.36222 * 85.42089 * 4 2 1 7 7 C 1.40360 * 118.50539 * 0.25746 * 6 4 2 8 8 C 1.38010 * 120.38618 * 198.51951 * 7 6 4 9 9 C 1.39887 * 119.76527 * 180.02562 * 8 7 6 10 10 C 1.47381 * 120.08675 * 179.97438 * 9 8 7 11 11 O 1.21519 * 120.00523 * 359.97438 * 10 9 8 12 12 O 1.34766 * 119.99908 * 179.97438 * 10 9 8 13 13 C 1.45205 * 116.99714 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46730 * 179.97438 * 13 12 10 15 15 C 1.50704 * 109.47264 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99280 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00161 * 180.02562 * 15 14 13 18 18 N 1.31523 * 120.00050 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00037 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47187 * 90.00525 * 19 17 15 21 21 H 1.48504 * 109.47001 * 209.99975 * 19 17 15 22 22 H 1.48495 * 109.46884 * 330.00026 * 19 17 15 23 23 C 1.39832 * 119.82309 * 359.97438 * 9 8 7 24 24 C 1.37662 * 120.14937 * 0.06498 * 23 9 8 25 25 C 1.39137 * 120.17479 * 359.97438 * 24 23 9 26 26 N 1.39045 * 119.97499 * 179.86631 * 25 24 23 27 27 C 1.46905 * 110.99957 * 19.49067 * 26 25 24 28 28 H 1.08997 * 109.47568 * 300.28851 * 1 2 3 29 29 H 1.08998 * 109.47399 * 60.29485 * 1 2 3 30 30 H 1.09004 * 109.47073 * 180.29218 * 1 2 3 31 31 H 0.97002 * 120.74746 * 180.50601 * 6 4 2 32 32 H 1.08003 * 120.11642 * 0.03308 * 8 7 6 33 33 H 1.09002 * 109.47237 * 299.99733 * 13 12 10 34 34 H 1.08993 * 109.47242 * 60.00063 * 13 12 10 35 35 H 1.08997 * 109.47266 * 300.00347 * 14 13 12 36 36 H 1.09005 * 109.47433 * 60.00277 * 14 13 12 37 37 H 0.97000 * 120.00046 * 180.02562 * 18 17 15 38 38 H 1.07998 * 119.92447 * 180.02562 * 23 9 8 39 39 H 1.07993 * 119.91289 * 179.97438 * 24 23 9 40 40 H 1.08997 * 109.46875 * 177.52208 * 27 26 25 41 41 H 1.09000 * 109.46926 * 297.52223 * 27 26 25 42 42 H 1.09000 * 109.47022 * 57.52048 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8899 1.0288 0.0000 4 6 2.0299 -0.7045 1.2347 5 8 2.3166 -0.0700 2.2280 6 7 2.1610 -2.0496 1.2229 7 6 1.8291 -2.7447 0.0496 8 6 1.5775 -4.1011 0.0893 9 6 1.2483 -4.7811 -1.0880 10 6 0.9787 -6.2297 -1.0539 11 8 1.0428 -6.8351 -0.0022 12 8 0.6612 -6.8829 -2.1891 13 6 0.4093 -8.3088 -2.0806 14 6 0.0663 -8.8725 -3.4610 15 6 -0.1946 -10.3525 -3.3487 16 1 -0.1233 -10.8420 -2.3886 17 6 -0.5243 -11.0816 -4.4715 18 7 -0.7524 -12.3731 -4.3733 19 14 -0.6468 -10.2350 -6.1321 20 1 0.6773 -10.2681 -6.8035 21 1 -1.6465 -10.9397 -6.9744 22 1 -1.0688 -8.8245 -5.9387 23 6 1.1756 -4.0828 -2.2973 24 6 1.4284 -2.7300 -2.3308 25 6 1.7569 -2.0508 -1.1618 26 7 2.0142 -0.6849 -1.2009 27 6 1.4539 -0.0782 -2.4159 28 1 -0.3634 0.5183 0.8873 29 1 -0.3634 0.5092 -0.8926 30 1 -0.3633 -1.0277 0.0052 31 1 2.4740 -2.5243 2.0088 32 1 1.6344 -4.6357 1.0260 33 1 1.2991 -8.8068 -1.6953 34 1 -0.4256 -8.4796 -1.4011 35 1 -0.8236 -8.3745 -3.8460 36 1 0.9010 -8.7017 -4.1410 37 1 -0.9840 -12.8862 -5.1633 38 1 0.9212 -4.6061 -3.2072 39 1 1.3716 -2.1946 -3.2669 40 1 1.6310 0.9971 -2.3998 41 1 1.9335 -0.5124 -3.2931 42 1 0.3816 -0.2693 -2.4561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750568213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:52 Heat of formation + Delta-G solvation = -105.036908 kcal Electronic energy + Delta-G solvation = -25898.130111 eV Core-core repulsion = 22035.396643 eV Total energy + Delta-G solvation = -3862.733468 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.75326 -41.41805 -39.89303 -38.29337 -37.54820 -36.36971 -35.36403 -33.02641 -32.58446 -31.08328 -30.31963 -28.26049 -27.20664 -25.38813 -24.35292 -23.59154 -22.71435 -22.35506 -20.28960 -19.76487 -19.15783 -18.86338 -17.92922 -17.54037 -17.43423 -17.12054 -16.86534 -16.28384 -16.12025 -15.74992 -15.40774 -15.28876 -15.22210 -14.96805 -14.57445 -14.33858 -14.12157 -13.86386 -13.70535 -13.30102 -13.16218 -13.05977 -12.91527 -12.66460 -12.47896 -12.44706 -12.19629 -11.89263 -11.78700 -11.62702 -11.51162 -11.42676 -11.32417 -11.07376 -10.78935 -9.69232 -8.76845 -8.32155 -6.40792 -0.49234 0.07168 1.09885 1.41166 1.43121 1.51541 1.54859 1.56569 1.89499 2.37161 2.40272 2.66837 2.97184 3.02925 3.43209 3.59159 3.73933 3.89846 4.01718 4.07212 4.14742 4.19212 4.22114 4.40998 4.47608 4.54584 4.59435 4.64270 4.65459 4.70497 4.92493 4.98901 5.05923 5.13396 5.23534 5.32032 5.39006 5.43458 5.49539 5.54430 5.60348 5.77702 6.01468 6.17511 6.65521 6.68181 6.72757 7.24343 8.84003 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025941 B = 0.002511 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.094016 B =11150.453204 C =11983.445897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 H 0.148 0.852 4 C 0.525 3.475 5 O -0.554 6.554 6 N -0.656 5.656 7 C 0.094 3.906 8 C -0.059 4.059 9 C -0.143 4.143 10 C 0.504 3.496 11 O -0.547 6.547 12 O -0.351 6.351 13 C 0.094 3.906 14 C -0.002 4.002 15 C -0.543 4.543 16 H 0.033 0.967 17 C 0.009 3.991 18 N -0.947 5.947 19 Si 0.957 3.043 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.238 1.238 23 C -0.039 4.039 24 C -0.140 4.140 25 C 0.127 3.873 26 N -0.487 5.487 27 C 0.008 3.992 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.054 0.946 31 H 0.419 0.581 32 H 0.139 0.861 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.270 0.730 38 H 0.155 0.845 39 H 0.180 0.820 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 32.480 1.600 32.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.038 4.038 3 H 0.165 0.835 4 C 0.314 3.686 5 O -0.430 6.430 6 N -0.302 5.302 7 C -0.003 4.003 8 C -0.081 4.081 9 C -0.146 4.146 10 C 0.351 3.649 11 O -0.439 6.439 12 O -0.267 6.267 13 C 0.021 3.979 14 C -0.039 4.039 15 C -0.581 4.581 16 H 0.051 0.949 17 C -0.189 4.189 18 N -0.586 5.586 19 Si 0.779 3.221 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.161 1.161 23 C -0.058 4.058 24 C -0.161 4.161 25 C 0.025 3.975 26 N -0.200 5.200 27 C -0.136 4.136 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.073 0.927 31 H 0.259 0.741 32 H 0.157 0.843 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.173 0.827 39 H 0.197 0.803 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.159 32.790 2.232 33.128 hybrid contribution -0.472 -1.426 0.528 1.592 sum 3.687 31.364 2.759 31.701 Atomic orbital electron populations 1.22441 0.91992 1.03485 1.05864 1.22095 0.96913 0.99907 0.84923 0.83465 1.21171 0.75777 0.81717 0.89983 1.90785 1.49955 1.65807 1.36490 1.43752 1.64605 1.07319 1.14545 1.17186 1.06169 0.91295 0.85630 1.20561 0.97188 0.91905 0.98399 1.18720 1.11468 0.88372 0.95991 1.21592 0.72679 0.89253 0.81399 1.90810 1.50218 1.70059 1.32799 1.86497 1.79264 1.25369 1.35542 1.22980 1.00152 0.74640 1.00167 1.19459 0.98168 0.93829 0.92470 1.21130 1.48670 0.92861 0.95453 0.94912 1.26006 0.93565 0.95303 1.04000 1.70057 1.48428 1.08450 1.31677 0.85567 0.78862 0.80103 0.77612 1.18789 1.20873 1.16144 1.21537 0.93143 0.94198 0.96924 1.21253 1.02726 0.93845 0.98242 1.19042 0.95823 0.90400 0.92280 1.58417 1.56215 1.00048 1.05350 1.22925 0.99722 1.01752 0.89247 0.90352 0.87347 0.92729 0.74112 0.84279 0.92543 0.92500 0.94254 0.94437 0.92108 0.82699 0.80268 0.87961 0.88186 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 8.47 71.98 0.61 -0.87 16 2 C 0.07 0.80 2.92 44.24 0.13 0.93 16 3 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.53 9.80 7.17 87.59 0.63 10.43 16 5 O -0.55 -14.07 17.96 -3.08 -0.06 -14.12 16 6 N -0.66 -11.57 5.49 -302.62 -1.66 -13.23 16 7 C 0.09 1.69 6.17 38.10 0.24 1.92 16 8 C -0.06 -1.27 9.48 22.62 0.21 -1.06 16 9 C -0.14 -3.46 5.88 -20.09 -0.12 -3.57 16 10 C 0.50 16.74 7.89 70.23 0.55 17.30 16 11 O -0.55 -21.49 16.13 19.77 0.32 -21.17 16 12 O -0.35 -12.47 9.46 -56.77 -0.54 -13.00 16 13 C 0.09 3.96 5.42 71.98 0.39 4.35 16 14 C 0.00 -0.08 4.42 29.85 0.13 0.05 16 15 C -0.54 -31.07 9.66 25.60 0.25 -30.82 16 16 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 17 C 0.01 0.51 5.47 84.65 0.46 0.98 16 18 N -0.95 -58.49 13.96 21.45 0.30 -58.19 16 19 Si 0.96 42.22 27.47 68.60 1.88 44.11 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 23 C -0.04 -0.68 9.60 22.52 0.22 -0.47 16 24 C -0.14 -1.69 8.95 22.35 0.20 -1.49 16 25 C 0.13 1.80 5.06 38.59 0.20 2.00 16 26 N -0.49 -5.09 4.85 -700.77 -3.40 -8.49 16 27 C 0.01 0.02 7.67 127.69 0.98 1.00 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.11 0.33 6.46 -2.39 -0.02 0.32 16 30 H 0.05 0.62 7.28 -2.38 -0.02 0.61 16 31 H 0.42 6.67 8.90 -92.71 -0.83 5.84 16 32 H 0.14 3.08 7.65 -2.91 -0.02 3.06 16 33 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.04 1.73 7.20 -2.39 -0.02 1.72 16 36 H 0.04 1.64 7.57 -2.38 -0.02 1.62 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.16 2.55 7.59 -2.91 -0.02 2.52 16 39 H 0.18 0.90 5.91 -2.91 -0.02 0.88 16 40 H 0.10 -0.02 8.10 -2.39 -0.02 -0.04 16 41 H 0.10 0.11 6.68 -2.39 -0.02 0.10 16 42 H 0.07 0.08 6.57 -2.39 -0.02 0.07 16 Total: -1.00 -76.20 349.05 2.11 -74.09 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.19 Total: 9.33 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.07 Total: 0.68 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -4.76 Total: -79.91 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -0.27 Total: -48.29 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.11 kcal Total: -76.20 2.11 -74.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750568213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.946 kcal (2) G-P(sol) polarization free energy of solvation -76.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds