Wall clock time and date at job start Tue Mar 31 2020 12:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.36815 * 2 1 4 4 C 1.50688 * 109.37687 * 240.34961 * 2 1 3 5 5 O 1.21293 * 120.31437 * 24.80786 * 4 2 1 6 6 N 1.35151 * 119.36442 * 204.82800 * 4 2 1 7 7 C 1.40363 * 118.50865 * 0.72839 * 6 4 2 8 8 C 1.38006 * 120.32192 * 198.27540 * 7 6 4 9 9 C 1.39887 * 119.76322 * 179.77304 * 8 7 6 10 10 C 1.47389 * 120.08327 * 180.02562 * 9 8 7 11 11 O 1.21516 * 120.00192 * 0.02562 * 10 9 8 12 12 O 1.34766 * 119.99885 * 180.02562 * 10 9 8 13 13 C 1.45200 * 117.00302 * 179.97438 * 12 10 9 14 14 C 1.52990 * 109.47091 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47042 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99859 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00353 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00420 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99844 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47010 * 90.00070 * 19 17 15 21 21 H 1.48500 * 109.47196 * 210.00396 * 19 17 15 22 22 H 1.48505 * 109.47283 * 330.00541 * 19 17 15 23 23 C 1.39831 * 119.82491 * 0.02562 * 9 8 7 24 24 C 1.37661 * 120.14587 * 0.31564 * 23 9 8 25 25 C 1.39126 * 120.17990 * 359.49303 * 24 23 9 26 26 N 1.39045 * 119.98192 * 180.10550 * 25 24 23 27 27 C 1.46898 * 110.99753 * 19.69606 * 26 25 24 28 28 H 1.09005 * 109.47474 * 300.23058 * 1 2 3 29 29 H 1.08997 * 109.47258 * 60.23811 * 1 2 3 30 30 H 1.09005 * 109.47031 * 180.23927 * 1 2 3 31 31 H 0.97002 * 120.74507 * 180.70461 * 6 4 2 32 32 H 1.07997 * 120.11217 * 359.75814 * 8 7 6 33 33 H 1.08999 * 109.47014 * 300.00490 * 13 12 10 34 34 H 1.08997 * 109.46470 * 60.00084 * 13 12 10 35 35 H 1.08999 * 109.47665 * 300.00181 * 14 13 12 36 36 H 1.08997 * 109.47322 * 60.00696 * 14 13 12 37 37 H 0.97005 * 120.00228 * 180.02562 * 18 17 15 38 38 H 1.08004 * 119.92236 * 180.08551 * 23 9 8 39 39 H 1.07999 * 119.90615 * 179.75134 * 24 23 9 40 40 H 1.09003 * 109.47507 * 56.05206 * 27 26 25 41 41 H 1.08998 * 109.47243 * 176.04980 * 27 26 25 42 42 H 1.09001 * 109.47386 * 296.04690 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8915 1.0283 0.0000 4 6 2.0299 -0.7032 -1.2354 5 8 1.3364 -0.7631 -2.2287 6 7 3.2583 -1.2669 -1.2258 7 6 4.0221 -1.1887 -0.0508 8 6 5.3854 -1.3992 -0.0908 9 6 6.1361 -1.3137 1.0865 10 6 7.5926 -1.5367 1.0519 11 8 8.1430 -1.7946 -0.0004 12 8 8.3141 -1.4544 2.1872 13 6 9.7433 -1.6863 2.0784 14 6 10.3885 -1.5509 3.4589 15 6 11.8720 -1.7910 3.3459 16 1 12.3107 -2.0170 2.3853 17 6 12.6691 -1.7220 4.4687 18 7 13.9638 -1.9310 4.3700 19 14 11.9104 -1.3303 6.1302 20 1 11.5052 -2.5926 6.7992 21 1 12.9051 -0.6202 6.9736 22 1 10.7175 -0.4668 5.9384 23 6 5.5009 -1.0163 2.2962 24 6 4.1397 -0.8142 2.3310 25 6 3.3906 -0.8946 1.1613 26 7 2.0162 -0.6876 1.2008 27 6 1.6281 0.0393 2.4169 28 1 -0.3634 0.5174 0.8879 29 1 -0.3633 0.5101 -0.8921 30 1 -0.3633 -1.0277 0.0043 31 1 3.6041 -1.7157 -2.0132 32 1 5.8709 -1.6293 -1.0276 33 1 9.9201 -2.6897 1.6910 34 1 10.1796 -0.9529 1.4003 35 1 10.2116 -0.5474 3.8459 36 1 9.9522 -2.2841 4.1374 37 1 14.5245 -1.8828 5.1600 38 1 6.0792 -0.9485 3.2059 39 1 3.6525 -0.5887 3.2681 40 1 2.1811 0.9769 2.4719 41 1 0.5589 0.2493 2.3890 42 1 1.8561 -0.5690 3.2922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750568214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:57 Heat of formation + Delta-G solvation = -81.222279 kcal Electronic energy + Delta-G solvation = -25706.748005 eV Core-core repulsion = 21845.047218 eV Total energy + Delta-G solvation = -3861.700788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92816 -40.13840 -39.05941 -37.47171 -36.17506 -35.58756 -33.33861 -32.40857 -30.84856 -30.29292 -29.53249 -27.79869 -25.45978 -24.10988 -23.65233 -22.79322 -21.42830 -20.67741 -19.42006 -18.93990 -18.25460 -17.31254 -17.00620 -16.54088 -16.41496 -16.11757 -16.05586 -15.01517 -14.82733 -14.72857 -14.63581 -14.23599 -14.20734 -13.71549 -13.49602 -13.19402 -13.00934 -12.94923 -12.56334 -12.49164 -12.30908 -12.03522 -11.60764 -11.58501 -11.29077 -11.09142 -10.74354 -10.69248 -10.60584 -10.46924 -10.05256 -9.96501 -9.73886 -9.37687 -8.96599 -8.64772 -8.08699 -6.15047 -4.16487 0.36552 0.82648 1.87376 2.43339 2.57097 2.95618 3.04025 3.25686 3.33188 3.36546 3.50736 3.64050 4.08437 4.24663 4.36100 4.42792 4.57634 4.71677 4.77862 4.83484 4.89259 4.92361 5.11130 5.16827 5.18376 5.28844 5.33921 5.41424 5.63532 5.71676 5.92951 5.94220 6.00031 6.10057 6.10989 6.19676 6.40941 6.44106 6.70138 6.71371 7.14066 7.18501 7.46548 7.59662 8.04450 8.37248 8.86697 9.44201 10.97464 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.002423 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.590789 B =11554.391204 C =12495.854243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.066 3.934 3 H 0.088 0.912 4 C 0.529 3.471 5 O -0.513 6.513 6 N -0.659 5.659 7 C 0.102 3.898 8 C -0.059 4.059 9 C -0.116 4.116 10 C 0.504 3.496 11 O -0.511 6.511 12 O -0.355 6.355 13 C 0.083 3.917 14 C -0.009 4.009 15 C -0.528 4.528 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.882 3.118 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.263 1.263 23 C -0.046 4.046 24 C -0.149 4.149 25 C 0.112 3.888 26 N -0.482 5.482 27 C 0.015 3.985 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.418 0.582 32 H 0.147 0.853 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.024 5.435 -4.410 29.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.044 4.044 3 H 0.106 0.894 4 C 0.315 3.685 5 O -0.386 6.386 6 N -0.306 5.306 7 C 0.004 3.996 8 C -0.080 4.080 9 C -0.119 4.119 10 C 0.349 3.651 11 O -0.402 6.402 12 O -0.272 6.272 13 C 0.011 3.989 14 C -0.046 4.046 15 C -0.566 4.566 16 H 0.094 0.906 17 C -0.131 4.131 18 N -0.534 5.534 19 Si 0.708 3.292 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.065 4.065 24 C -0.170 4.170 25 C 0.010 3.990 26 N -0.197 5.197 27 C -0.130 4.130 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.257 0.743 32 H 0.164 0.836 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -29.480 4.990 -5.050 30.322 hybrid contribution 0.567 0.420 0.463 0.844 sum -28.913 5.411 -4.588 29.770 Atomic orbital electron populations 1.21776 0.90101 1.04142 1.03290 1.21835 0.98910 0.97013 0.86608 0.89419 1.20596 0.80519 0.77934 0.89444 1.90787 1.55391 1.57686 1.34771 1.43724 1.16684 1.55944 1.14211 1.17195 0.90600 1.06839 0.84919 1.20650 0.90320 0.98018 0.98995 1.18940 0.90544 1.08194 0.94241 1.20857 0.87742 0.74028 0.82494 1.90828 1.72724 1.44779 1.31838 1.86526 1.25050 1.81000 1.34602 1.23428 0.72417 1.01273 1.01794 1.19627 0.96139 0.97983 0.90894 1.20835 0.89268 1.49613 0.96873 0.90634 1.24944 0.94668 0.94290 0.99153 1.69894 1.04267 1.49181 1.30093 0.86744 0.79459 0.79149 0.83799 1.20057 1.21198 1.18740 1.21420 0.93967 0.93277 0.97872 1.20943 0.93608 1.05375 0.97092 1.18823 0.87399 1.00037 0.92701 1.58289 1.09874 1.47476 1.04056 1.22736 1.02478 0.97134 0.90700 0.90947 0.90133 0.90930 0.74303 0.83565 0.91543 0.91542 0.95345 0.95750 0.92416 0.83335 0.83804 0.93103 0.89560 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.63 37.16 0.32 -0.45 16 2 C 0.07 0.48 2.55 -69.00 -0.18 0.30 16 3 H 0.09 0.54 8.13 -51.93 -0.42 0.12 16 4 C 0.53 5.24 7.66 -10.82 -0.08 5.16 16 5 O -0.51 -6.42 16.95 5.55 0.09 -6.33 16 6 N -0.66 -6.06 5.49 -9.65 -0.05 -6.11 16 7 C 0.10 0.99 6.49 -83.45 -0.54 0.45 16 8 C -0.06 -0.64 9.48 -39.05 -0.37 -1.01 16 9 C -0.12 -1.46 5.88 -104.96 -0.62 -2.08 16 10 C 0.50 8.33 7.89 34.46 0.27 8.60 16 11 O -0.51 -9.69 16.13 -19.28 -0.31 -10.00 16 12 O -0.36 -6.41 9.46 -40.67 -0.38 -6.80 16 13 C 0.08 1.73 5.41 37.15 0.20 1.93 16 14 C -0.01 -0.21 4.42 -27.89 -0.12 -0.33 16 15 C -0.53 -14.74 9.66 -34.44 -0.33 -15.07 16 16 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 19 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 23 C -0.05 -0.47 9.60 -39.20 -0.38 -0.85 16 24 C -0.15 -1.21 8.93 -39.46 -0.35 -1.56 16 25 C 0.11 0.99 5.91 -83.67 -0.49 0.49 16 26 N -0.48 -3.52 4.65 -172.71 -0.80 -4.32 16 27 C 0.01 0.06 8.30 60.06 0.50 0.56 16 28 H 0.07 0.25 6.31 -51.93 -0.33 -0.08 16 29 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.42 3.27 8.90 -40.82 -0.36 2.90 16 32 H 0.15 1.54 7.65 -52.49 -0.40 1.14 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 36 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.15 1.46 7.60 -52.48 -0.40 1.06 16 39 H 0.14 0.79 5.95 -52.49 -0.31 0.48 16 40 H 0.05 0.19 7.98 -51.93 -0.41 -0.22 16 41 H 0.09 0.24 6.01 -51.93 -0.31 -0.07 16 42 H 0.09 0.31 6.77 -51.93 -0.35 -0.04 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -33.63 349.79 -7.69 -41.32 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.33 Total: -1.13 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.27 Total: -1.92 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.08 Total: -36.69 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.60 Total: -23.13 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.63 -7.69 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750568214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.904 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds