Wall clock time and date at job start Tue Mar 31 2020 12:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.36815 * 2 1 4 4 C 1.50688 * 109.37687 * 240.34961 * 2 1 3 5 5 O 1.21293 * 120.31437 * 24.80786 * 4 2 1 6 6 N 1.35151 * 119.36442 * 204.82800 * 4 2 1 7 7 C 1.40363 * 118.50865 * 0.72839 * 6 4 2 8 8 C 1.38006 * 120.32192 * 198.27540 * 7 6 4 9 9 C 1.39887 * 119.76322 * 179.77304 * 8 7 6 10 10 C 1.47389 * 120.08327 * 180.02562 * 9 8 7 11 11 O 1.21516 * 120.00192 * 0.02562 * 10 9 8 12 12 O 1.34766 * 119.99885 * 180.02562 * 10 9 8 13 13 C 1.45200 * 117.00302 * 179.97438 * 12 10 9 14 14 C 1.52990 * 109.47091 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47042 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99859 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00353 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00420 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99844 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47010 * 90.00070 * 19 17 15 21 21 H 1.48500 * 109.47196 * 210.00396 * 19 17 15 22 22 H 1.48505 * 109.47283 * 330.00541 * 19 17 15 23 23 C 1.39831 * 119.82491 * 0.02562 * 9 8 7 24 24 C 1.37661 * 120.14587 * 0.31564 * 23 9 8 25 25 C 1.39126 * 120.17990 * 359.49303 * 24 23 9 26 26 N 1.39045 * 119.98192 * 180.10550 * 25 24 23 27 27 C 1.46898 * 110.99753 * 19.69606 * 26 25 24 28 28 H 1.09005 * 109.47474 * 300.23058 * 1 2 3 29 29 H 1.08997 * 109.47258 * 60.23811 * 1 2 3 30 30 H 1.09005 * 109.47031 * 180.23927 * 1 2 3 31 31 H 0.97002 * 120.74507 * 180.70461 * 6 4 2 32 32 H 1.07997 * 120.11217 * 359.75814 * 8 7 6 33 33 H 1.08999 * 109.47014 * 300.00490 * 13 12 10 34 34 H 1.08997 * 109.46470 * 60.00084 * 13 12 10 35 35 H 1.08999 * 109.47665 * 300.00181 * 14 13 12 36 36 H 1.08997 * 109.47322 * 60.00696 * 14 13 12 37 37 H 0.97005 * 120.00228 * 180.02562 * 18 17 15 38 38 H 1.08004 * 119.92236 * 180.08551 * 23 9 8 39 39 H 1.07999 * 119.90615 * 179.75134 * 24 23 9 40 40 H 1.09003 * 109.47507 * 56.05206 * 27 26 25 41 41 H 1.08998 * 109.47243 * 176.04980 * 27 26 25 42 42 H 1.09001 * 109.47386 * 296.04690 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8915 1.0283 0.0000 4 6 2.0299 -0.7032 -1.2354 5 8 1.3364 -0.7631 -2.2287 6 7 3.2583 -1.2669 -1.2258 7 6 4.0221 -1.1887 -0.0508 8 6 5.3854 -1.3992 -0.0908 9 6 6.1361 -1.3137 1.0865 10 6 7.5926 -1.5367 1.0519 11 8 8.1430 -1.7946 -0.0004 12 8 8.3141 -1.4544 2.1872 13 6 9.7433 -1.6863 2.0784 14 6 10.3885 -1.5509 3.4589 15 6 11.8720 -1.7910 3.3459 16 1 12.3107 -2.0170 2.3853 17 6 12.6691 -1.7220 4.4687 18 7 13.9638 -1.9310 4.3700 19 14 11.9104 -1.3303 6.1302 20 1 11.5052 -2.5926 6.7992 21 1 12.9051 -0.6202 6.9736 22 1 10.7175 -0.4668 5.9384 23 6 5.5009 -1.0163 2.2962 24 6 4.1397 -0.8142 2.3310 25 6 3.3906 -0.8946 1.1613 26 7 2.0162 -0.6876 1.2008 27 6 1.6281 0.0393 2.4169 28 1 -0.3634 0.5174 0.8879 29 1 -0.3633 0.5101 -0.8921 30 1 -0.3633 -1.0277 0.0043 31 1 3.6041 -1.7157 -2.0132 32 1 5.8709 -1.6293 -1.0276 33 1 9.9201 -2.6897 1.6910 34 1 10.1796 -0.9529 1.4003 35 1 10.2116 -0.5474 3.8459 36 1 9.9522 -2.2841 4.1374 37 1 14.5245 -1.8828 5.1600 38 1 6.0792 -0.9485 3.2059 39 1 3.6525 -0.5887 3.2681 40 1 2.1811 0.9769 2.4719 41 1 0.5589 0.2493 2.3890 42 1 1.8561 -0.5690 3.2922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750568214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:56 Heat of formation + Delta-G solvation = -104.275396 kcal Electronic energy + Delta-G solvation = -25707.747664 eV Core-core repulsion = 21845.047218 eV Total energy + Delta-G solvation = -3862.700446 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.63639 -41.41798 -39.91560 -38.23361 -37.55421 -36.38858 -35.36486 -33.15238 -32.68075 -31.03985 -30.27378 -28.40939 -27.16064 -24.97341 -24.41648 -23.60497 -22.65791 -22.26407 -20.34600 -19.72485 -19.20615 -18.84892 -18.01296 -17.64216 -17.53352 -17.42320 -17.03627 -16.28555 -15.72425 -15.56016 -15.43327 -15.27939 -15.16687 -15.06578 -14.71496 -14.36371 -14.02833 -13.69793 -13.62758 -13.29067 -13.19196 -12.96081 -12.92272 -12.49913 -12.47159 -12.44888 -12.15591 -11.90234 -11.78795 -11.62154 -11.50987 -11.42864 -11.32333 -11.13518 -10.79061 -9.70108 -8.78799 -8.32175 -6.40767 -0.50342 0.06552 1.09040 1.41020 1.43005 1.51435 1.54338 1.56195 1.88260 2.37045 2.37260 2.65161 2.96723 3.02832 3.42337 3.58599 3.75113 3.92065 3.97483 4.06876 4.17123 4.19134 4.22608 4.40314 4.49914 4.57884 4.64288 4.65868 4.71319 4.78657 4.94518 5.02646 5.10706 5.21108 5.22732 5.31939 5.38618 5.45364 5.49295 5.54308 5.59757 5.76649 6.00537 6.17474 6.65486 6.67874 6.73108 7.24271 8.83902 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.002423 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.590789 B =11554.391204 C =12495.854243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.067 3.933 3 H 0.105 0.895 4 C 0.522 3.478 5 O -0.546 6.546 6 N -0.658 5.658 7 C 0.093 3.907 8 C -0.058 4.058 9 C -0.142 4.142 10 C 0.504 3.496 11 O -0.546 6.546 12 O -0.351 6.351 13 C 0.094 3.906 14 C -0.002 4.002 15 C -0.543 4.543 16 H 0.033 0.967 17 C 0.009 3.991 18 N -0.946 5.946 19 Si 0.957 3.043 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.239 1.239 23 C -0.039 4.039 24 C -0.138 4.138 25 C 0.123 3.877 26 N -0.487 5.487 27 C 0.007 3.993 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.420 0.580 32 H 0.140 0.860 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.270 0.730 38 H 0.156 0.844 39 H 0.180 0.820 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.624 6.753 -1.663 33.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.042 4.042 3 H 0.123 0.877 4 C 0.309 3.691 5 O -0.422 6.422 6 N -0.304 5.304 7 C -0.004 4.004 8 C -0.080 4.080 9 C -0.145 4.145 10 C 0.351 3.649 11 O -0.439 6.439 12 O -0.267 6.267 13 C 0.021 3.979 14 C -0.039 4.039 15 C -0.581 4.581 16 H 0.051 0.949 17 C -0.189 4.189 18 N -0.586 5.586 19 Si 0.778 3.222 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.162 1.162 23 C -0.058 4.058 24 C -0.159 4.159 25 C 0.021 3.979 26 N -0.201 5.201 27 C -0.137 4.137 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.259 0.741 32 H 0.158 0.842 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.174 0.826 39 H 0.197 0.803 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -33.115 6.313 -2.304 33.790 hybrid contribution 1.584 -0.015 -0.505 1.663 sum -31.531 6.299 -2.810 32.277 Atomic orbital electron populations 1.21779 0.88816 1.03751 1.04491 1.21930 0.99815 0.97201 0.85221 0.87736 1.21195 0.80208 0.77581 0.90072 1.90769 1.56172 1.59057 1.36211 1.43775 1.16648 1.55680 1.14335 1.17208 0.90140 1.07420 0.85613 1.20564 0.90890 0.98111 0.98422 1.18731 0.87949 1.11826 0.95992 1.21585 0.89131 0.72784 0.81413 1.90809 1.73634 1.46649 1.32759 1.86496 1.23286 1.81378 1.35513 1.22979 0.74301 1.00493 1.00166 1.19458 0.93322 0.98687 0.92475 1.21128 0.92021 1.49553 0.95412 0.94895 1.26006 0.95009 0.93875 1.04009 1.70053 1.06178 1.50662 1.31666 0.85569 0.79233 0.79729 0.77622 1.18794 1.20866 1.16163 1.21541 0.94997 0.92324 0.96948 1.21231 0.92494 1.03984 0.98164 1.19076 0.88310 0.98174 0.92371 1.58272 1.08483 1.48069 1.05271 1.22975 1.03921 0.97535 0.89304 0.87999 0.90685 0.92118 0.74078 0.84211 0.92522 0.92495 0.94270 0.94427 0.92111 0.82646 0.80266 0.91849 0.87740 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.63 71.98 0.62 -0.51 16 2 C 0.07 0.80 2.55 44.21 0.11 0.91 16 3 H 0.11 0.94 8.13 -2.39 -0.02 0.92 16 4 C 0.52 9.80 7.66 87.59 0.67 10.47 16 5 O -0.55 -13.56 16.95 -3.07 -0.05 -13.61 16 6 N -0.66 -11.71 5.49 -302.63 -1.66 -13.37 16 7 C 0.09 1.69 6.49 38.10 0.25 1.94 16 8 C -0.06 -1.26 9.48 22.61 0.21 -1.05 16 9 C -0.14 -3.46 5.88 -20.08 -0.12 -3.58 16 10 C 0.50 16.78 7.89 70.23 0.55 17.33 16 11 O -0.55 -21.49 16.13 19.78 0.32 -21.17 16 12 O -0.35 -12.48 9.46 -56.77 -0.54 -13.02 16 13 C 0.09 3.96 5.41 71.98 0.39 4.35 16 14 C 0.00 -0.09 4.42 29.85 0.13 0.04 16 15 C -0.54 -31.08 9.66 25.60 0.25 -30.83 16 16 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 17 C 0.01 0.50 5.47 84.66 0.46 0.96 16 18 N -0.95 -58.46 13.96 21.45 0.30 -58.16 16 19 Si 0.96 42.27 27.47 68.60 1.88 44.15 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 23 C -0.04 -0.69 9.60 22.52 0.22 -0.47 16 24 C -0.14 -1.69 8.93 22.35 0.20 -1.49 16 25 C 0.12 1.79 5.91 38.59 0.23 2.02 16 26 N -0.49 -5.30 4.65 -700.33 -3.26 -8.56 16 27 C 0.01 0.02 8.30 127.69 1.06 1.08 16 28 H 0.10 0.27 6.31 -2.38 -0.02 0.25 16 29 H 0.07 0.77 7.86 -2.39 -0.02 0.75 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.42 6.70 8.90 -92.71 -0.83 5.87 16 32 H 0.14 3.10 7.65 -2.91 -0.02 3.08 16 33 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.04 1.73 7.20 -2.39 -0.02 1.71 16 36 H 0.04 1.64 7.57 -2.39 -0.02 1.62 16 37 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 38 H 0.16 2.57 7.60 -2.91 -0.02 2.55 16 39 H 0.18 0.94 5.95 -2.91 -0.02 0.92 16 40 H 0.06 0.12 7.98 -2.39 -0.02 0.11 16 41 H 0.10 0.02 6.01 -2.39 -0.01 0.00 16 42 H 0.10 0.14 6.77 -2.39 -0.02 0.13 16 Total: -1.00 -75.66 349.79 2.42 -73.24 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.19 Total: 9.32 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 5.24 Total: 1.17 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -4.62 Total: -80.09 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -0.27 Total: -47.80 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.15 kcal Total: -75.66 2.42 -73.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750568214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.031 kcal (2) G-P(sol) polarization free energy of solvation -75.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds