Wall clock time and date at job start Tue Mar 31 2020 12:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46864 * 2 1 4 4 C 1.50701 * 109.47104 * 240.00229 * 2 1 3 5 5 H 1.07998 * 119.99910 * 239.99850 * 4 2 1 6 6 C 1.37880 * 119.99647 * 59.99596 * 4 2 1 7 7 N 1.31512 * 120.00449 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99639 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47154 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46980 * 120.00146 * 8 6 4 11 11 H 1.48500 * 109.47279 * 240.00475 * 8 6 4 12 12 O 1.45201 * 109.47198 * 120.00104 * 2 1 3 13 13 C 1.34759 * 116.99761 * 269.99672 * 12 2 1 14 14 O 1.21516 * 120.00487 * 359.72923 * 13 12 2 15 15 C 1.47396 * 119.99724 * 180.02562 * 13 12 2 16 16 C 1.39833 * 120.08519 * 359.45290 * 15 13 12 17 17 C 1.37666 * 120.14382 * 179.77594 * 16 15 13 18 18 C 1.39133 * 120.17660 * 0.56294 * 17 16 15 19 19 C 1.39797 * 119.85899 * 359.60621 * 18 17 16 20 20 C 1.38006 * 120.22907 * 0.16012 * 19 18 17 21 21 N 1.40368 * 119.46591 * 180.35635 * 19 18 17 22 22 C 1.35153 * 118.51465 * 18.05576 * 21 19 18 23 23 O 1.21294 * 120.31090 * 180.74671 * 22 21 19 24 24 C 1.50680 * 119.37219 * 0.76400 * 22 21 19 25 25 H 1.09004 * 109.27669 * 85.16624 * 24 22 21 26 26 C 1.53004 * 109.37300 * 204.86645 * 24 22 21 27 27 N 1.39046 * 119.98448 * 179.50557 * 18 17 16 28 28 C 1.46902 * 110.99559 * 268.82991 * 27 18 17 29 29 H 1.09004 * 109.47696 * 59.99702 * 1 2 3 30 30 H 1.08996 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46728 * 299.99738 * 1 2 3 32 32 H 0.96993 * 120.00015 * 179.97438 * 7 6 4 33 33 H 1.07998 * 119.93141 * 0.05535 * 16 15 13 34 34 H 1.07994 * 119.91425 * 180.26429 * 17 16 15 35 35 H 1.07995 * 120.11769 * 179.97438 * 20 19 18 36 36 H 0.96989 * 120.74484 * 198.03088 * 21 19 18 37 37 H 1.09003 * 109.46707 * 180.59935 * 26 24 22 38 38 H 1.08994 * 109.46821 * 300.59400 * 26 24 22 39 39 H 1.08994 * 109.47071 * 60.60126 * 26 24 22 40 40 H 1.09001 * 109.47211 * 56.05297 * 28 27 18 41 41 H 1.09000 * 109.46508 * 176.04593 * 28 27 18 42 42 H 1.08996 * 109.47517 * 296.04382 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1658 -1.5865 -4.8161 11 1 3.1465 -0.1873 -4.8166 12 8 2.0140 -0.6845 1.1855 13 6 2.2180 0.0670 2.2854 14 8 2.0021 1.2624 2.2532 15 6 2.7092 -0.5600 3.5256 16 6 2.9532 -1.9363 3.5662 17 6 3.4164 -2.5224 4.7226 18 6 3.6328 -1.7506 5.8598 19 6 3.3868 -0.3749 5.8244 20 6 2.9270 0.2192 4.6667 21 7 3.6152 0.3972 6.9742 22 6 4.3989 -0.1140 7.9495 23 8 4.6069 0.5194 8.9627 24 6 5.0120 -1.4782 7.7659 25 1 5.9434 -1.3819 7.2079 26 6 5.3028 -2.0925 9.1367 27 7 4.0909 -2.3484 7.0286 28 6 2.9695 -2.7691 7.8791 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.7093 1.1619 -3.4843 33 1 2.7822 -2.5401 2.6873 34 1 3.6076 -3.5850 4.7486 35 1 2.7371 1.2820 4.6415 36 1 3.2198 1.2780 7.0666 37 1 5.7563 -3.0750 9.0056 38 1 5.9877 -1.4467 9.6863 39 1 4.3719 -2.1934 9.6945 40 1 2.3139 -3.4320 7.3144 41 1 3.3537 -3.2958 8.7526 42 1 2.4088 -1.8917 8.2014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750708420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:00 Heat of formation + Delta-G solvation = -79.623889 kcal Electronic energy + Delta-G solvation = -26311.786864 eV Core-core repulsion = 22450.155388 eV Total energy + Delta-G solvation = -3861.631477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.88031 -39.77879 -38.71353 -37.13750 -35.74190 -35.35333 -33.30109 -32.04233 -30.27225 -29.90363 -29.04495 -27.35009 -25.36712 -24.19497 -23.54267 -23.04404 -21.72386 -20.32514 -19.00057 -18.50038 -18.04999 -17.13085 -16.80527 -16.41790 -16.05973 -15.71870 -15.23312 -15.05611 -14.78304 -14.67940 -14.46681 -14.05862 -13.64364 -13.46409 -13.06825 -12.91971 -12.54277 -12.43280 -12.30112 -12.18342 -11.92981 -11.67838 -11.58951 -11.28239 -11.12602 -10.97162 -10.88942 -10.82821 -10.40481 -10.32178 -9.85900 -9.61296 -9.46621 -8.95226 -8.80736 -8.53800 -8.25681 -6.22411 -4.29473 0.53099 1.01070 2.05590 2.52703 2.84845 3.20587 3.21688 3.28301 3.32550 3.52060 3.76961 3.82143 4.29724 4.34399 4.47162 4.68054 4.83418 4.96384 5.04971 5.10064 5.10824 5.12219 5.25543 5.27910 5.43157 5.47945 5.57300 5.70609 5.80047 6.00073 6.14344 6.27547 6.30942 6.43541 6.55613 6.60668 6.84464 6.85552 6.91939 7.07529 7.54292 7.55566 7.66969 7.86594 8.08136 8.53022 8.81750 9.36134 10.85151 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.002668 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.368129 B =10491.884262 C =10925.943729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.048 0.952 4 C -0.521 4.521 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.348 6.348 13 C 0.495 3.505 14 O -0.515 6.515 15 C -0.084 4.084 16 C -0.069 4.069 17 C -0.083 4.083 18 C 0.076 3.924 19 C 0.106 3.894 20 C -0.081 4.081 21 N -0.663 5.663 22 C 0.491 3.509 23 O -0.519 6.519 24 C 0.067 3.933 25 H 0.122 0.878 26 C -0.138 4.138 27 N -0.483 5.483 28 C 0.018 3.982 29 H 0.100 0.900 30 H 0.038 0.962 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.414 0.586 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 -8.186 20.086 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.559 4.559 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.208 1.208 12 O -0.264 6.264 13 C 0.339 3.661 14 O -0.406 6.406 15 C -0.086 4.086 16 C -0.089 4.089 17 C -0.103 4.103 18 C -0.021 4.021 19 C 0.009 3.991 20 C -0.102 4.102 21 N -0.310 5.310 22 C 0.277 3.723 23 O -0.392 6.392 24 C -0.044 4.044 25 H 0.140 0.860 26 C -0.195 4.195 27 N -0.202 5.202 28 C -0.128 4.128 29 H 0.118 0.882 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.253 0.747 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.710 -7.949 20.408 22.633 hybrid contribution -0.456 1.068 -0.796 1.408 sum 5.254 -6.881 19.612 21.438 Atomic orbital electron populations 1.22173 0.97435 1.00220 1.01478 1.20704 0.91450 0.94007 0.77496 0.93446 1.21050 1.32521 1.13542 0.88749 0.91131 1.24894 0.94904 0.95095 0.99116 1.69902 1.36063 1.22543 1.24153 0.86212 0.78634 0.79504 0.81749 1.19407 1.20711 1.20757 1.86546 1.75676 1.43120 1.21022 1.20832 0.75203 0.85289 0.84741 1.90789 1.48810 1.16176 1.84811 1.19263 1.03096 0.94071 0.92141 1.21535 0.95060 0.93641 0.98638 1.20798 0.98979 1.00545 0.89968 1.18603 1.01602 0.89139 0.92766 1.18109 1.02585 0.91031 0.87403 1.20728 0.99076 1.00801 0.89582 1.43941 1.49374 1.20540 1.17116 1.21976 0.78381 0.89571 0.82412 1.90759 1.59166 1.61871 1.27420 1.22038 0.97363 0.86736 0.98216 0.86038 1.21826 1.03155 1.01721 0.92839 1.59112 1.17510 1.39203 1.04407 1.22652 0.91933 1.00501 0.97684 0.88163 0.94309 0.96499 0.92402 0.83069 0.83788 0.83851 0.74706 0.90209 0.90349 0.91594 0.89923 0.89509 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 9.33 37.16 0.35 -3.50 16 2 C 0.22 5.64 2.57 -27.88 -0.07 5.56 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.21 8.90 -34.44 -0.31 -14.52 16 5 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 8 Si 0.91 20.63 29.54 -169.99 -5.02 15.60 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 O -0.35 -7.90 9.10 -40.65 -0.37 -8.27 16 13 C 0.50 10.10 7.86 34.46 0.27 10.37 16 14 O -0.51 -11.85 15.60 -19.28 -0.30 -12.15 16 15 C -0.08 -1.28 5.88 -104.96 -0.62 -1.90 16 16 C -0.07 -0.88 9.60 -39.19 -0.38 -1.25 16 17 C -0.08 -0.85 9.94 -39.46 -0.39 -1.24 16 18 C 0.08 0.80 4.85 -83.67 -0.41 0.40 16 19 C 0.11 1.22 6.49 -83.45 -0.54 0.67 16 20 C -0.08 -1.07 9.48 -39.05 -0.37 -1.44 16 21 N -0.66 -7.09 5.49 -9.66 -0.05 -7.14 16 22 C 0.49 5.47 6.89 -10.83 -0.07 5.40 16 23 O -0.52 -7.13 16.95 5.54 0.09 -7.04 16 24 C 0.07 0.59 3.06 -69.03 -0.21 0.38 16 25 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 26 C -0.14 -0.94 8.00 37.16 0.30 -0.64 16 27 N -0.48 -4.24 4.76 -172.75 -0.82 -5.06 16 28 C 0.02 0.13 8.60 60.07 0.52 0.65 16 29 H 0.10 2.66 6.07 -51.93 -0.32 2.34 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.15 1.89 7.60 -52.49 -0.40 1.49 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.14 1.89 7.65 -52.49 -0.40 1.49 16 36 H 0.41 3.95 8.90 -40.82 -0.36 3.59 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 39 H 0.07 0.44 6.28 -51.93 -0.33 0.12 16 40 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 41 H 0.09 0.49 6.10 -51.93 -0.32 0.17 16 42 H 0.03 0.28 7.62 -51.93 -0.40 -0.12 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -31.64 350.92 -7.96 -39.61 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.38 Total: 2.85 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.03 Total: 0.52 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.25 Total: -36.41 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.58 Total: -27.46 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.64 -7.96 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750708420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.018 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds