Wall clock time and date at job start Tue Mar 31 2020 12:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46864 * 2 1 4 4 C 1.50701 * 109.47104 * 240.00229 * 2 1 3 5 5 H 1.07998 * 119.99910 * 239.99850 * 4 2 1 6 6 C 1.37880 * 119.99647 * 59.99596 * 4 2 1 7 7 N 1.31512 * 120.00449 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99639 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47154 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46980 * 120.00146 * 8 6 4 11 11 H 1.48500 * 109.47279 * 240.00475 * 8 6 4 12 12 O 1.45201 * 109.47198 * 120.00104 * 2 1 3 13 13 C 1.34759 * 116.99761 * 269.99672 * 12 2 1 14 14 O 1.21516 * 120.00487 * 359.72923 * 13 12 2 15 15 C 1.47396 * 119.99724 * 180.02562 * 13 12 2 16 16 C 1.39833 * 120.08519 * 359.45290 * 15 13 12 17 17 C 1.37666 * 120.14382 * 179.77594 * 16 15 13 18 18 C 1.39133 * 120.17660 * 0.56294 * 17 16 15 19 19 C 1.39797 * 119.85899 * 359.60621 * 18 17 16 20 20 C 1.38006 * 120.22907 * 0.16012 * 19 18 17 21 21 N 1.40368 * 119.46591 * 180.35635 * 19 18 17 22 22 C 1.35153 * 118.51465 * 18.05576 * 21 19 18 23 23 O 1.21294 * 120.31090 * 180.74671 * 22 21 19 24 24 C 1.50680 * 119.37219 * 0.76400 * 22 21 19 25 25 H 1.09004 * 109.27669 * 85.16624 * 24 22 21 26 26 C 1.53004 * 109.37300 * 204.86645 * 24 22 21 27 27 N 1.39046 * 119.98448 * 179.50557 * 18 17 16 28 28 C 1.46902 * 110.99559 * 268.82991 * 27 18 17 29 29 H 1.09004 * 109.47696 * 59.99702 * 1 2 3 30 30 H 1.08996 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46728 * 299.99738 * 1 2 3 32 32 H 0.96993 * 120.00015 * 179.97438 * 7 6 4 33 33 H 1.07998 * 119.93141 * 0.05535 * 16 15 13 34 34 H 1.07994 * 119.91425 * 180.26429 * 17 16 15 35 35 H 1.07995 * 120.11769 * 179.97438 * 20 19 18 36 36 H 0.96989 * 120.74484 * 198.03088 * 21 19 18 37 37 H 1.09003 * 109.46707 * 180.59935 * 26 24 22 38 38 H 1.08994 * 109.46821 * 300.59400 * 26 24 22 39 39 H 1.08994 * 109.47071 * 60.60126 * 26 24 22 40 40 H 1.09001 * 109.47211 * 56.05297 * 28 27 18 41 41 H 1.09000 * 109.46508 * 176.04593 * 28 27 18 42 42 H 1.08996 * 109.47517 * 296.04382 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1658 -1.5865 -4.8161 11 1 3.1465 -0.1873 -4.8166 12 8 2.0140 -0.6845 1.1855 13 6 2.2180 0.0670 2.2854 14 8 2.0021 1.2624 2.2532 15 6 2.7092 -0.5600 3.5256 16 6 2.9532 -1.9363 3.5662 17 6 3.4164 -2.5224 4.7226 18 6 3.6328 -1.7506 5.8598 19 6 3.3868 -0.3749 5.8244 20 6 2.9270 0.2192 4.6667 21 7 3.6152 0.3972 6.9742 22 6 4.3989 -0.1140 7.9495 23 8 4.6069 0.5194 8.9627 24 6 5.0120 -1.4782 7.7659 25 1 5.9434 -1.3819 7.2079 26 6 5.3028 -2.0925 9.1367 27 7 4.0909 -2.3484 7.0286 28 6 2.9695 -2.7691 7.8791 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.7093 1.1619 -3.4843 33 1 2.7822 -2.5401 2.6873 34 1 3.6076 -3.5850 4.7486 35 1 2.7371 1.2820 4.6415 36 1 3.2198 1.2780 7.0666 37 1 5.7563 -3.0750 9.0056 38 1 5.9877 -1.4467 9.6863 39 1 4.3719 -2.1934 9.6945 40 1 2.3139 -3.4320 7.3144 41 1 3.3537 -3.2958 8.7526 42 1 2.4088 -1.8917 8.2014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750708420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:59 Heat of formation + Delta-G solvation = -100.157594 kcal Electronic energy + Delta-G solvation = -26312.677273 eV Core-core repulsion = 22450.155388 eV Total energy + Delta-G solvation = -3862.521885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.75595 -41.33472 -39.81195 -38.10621 -37.44878 -36.32371 -35.30788 -32.92355 -31.72106 -31.18939 -30.10932 -28.11007 -27.44764 -25.29390 -24.44436 -24.05883 -23.15649 -21.87535 -20.14495 -19.54105 -19.01915 -18.68017 -18.12859 -17.70889 -17.29888 -16.94496 -16.82369 -16.48361 -15.92591 -15.66799 -15.59812 -15.01356 -14.92343 -14.40652 -14.31408 -14.24935 -13.88559 -13.76318 -13.22924 -13.17744 -13.03844 -12.98603 -12.81457 -12.79065 -12.67677 -12.38382 -12.25097 -12.12646 -11.94305 -11.71927 -11.60897 -11.51785 -10.98280 -10.60186 -10.39011 -9.70461 -9.19170 -8.27917 -6.44545 -0.56129 0.04497 1.13657 1.44081 1.44824 1.52328 1.57723 1.64236 1.96550 2.40197 2.47306 2.61452 2.97511 3.03502 3.54210 3.69471 3.76567 4.00580 4.02733 4.06021 4.25478 4.36677 4.42662 4.51718 4.64025 4.74638 4.78086 4.78955 4.83518 4.87808 4.93164 5.00221 5.15723 5.20279 5.23213 5.33132 5.49225 5.49747 5.55397 5.61967 5.72135 5.89624 6.04808 6.05862 6.60186 6.68013 6.89269 7.26881 8.80217 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.002668 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.368129 B =10491.884262 C =10925.943729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.218 3.782 3 H 0.007 0.993 4 C -0.544 4.544 5 H 0.072 0.928 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.984 3.016 9 H -0.260 1.260 10 H -0.272 1.272 11 H -0.279 1.279 12 O -0.349 6.349 13 C 0.492 3.508 14 O -0.552 6.552 15 C -0.110 4.110 16 C -0.062 4.062 17 C -0.067 4.067 18 C 0.091 3.909 19 C 0.107 3.893 20 C -0.081 4.081 21 N -0.662 5.662 22 C 0.489 3.511 23 O -0.548 6.548 24 C 0.066 3.934 25 H 0.131 0.869 26 C -0.133 4.133 27 N -0.474 5.474 28 C 0.014 3.986 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.022 0.978 32 H 0.270 0.730 33 H 0.153 0.847 34 H 0.179 0.821 35 H 0.135 0.865 36 H 0.416 0.584 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.485 -11.192 21.143 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.582 4.582 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.807 3.193 9 H -0.183 1.183 10 H -0.198 1.198 11 H -0.204 1.204 12 O -0.265 6.265 13 C 0.339 3.661 14 O -0.445 6.445 15 C -0.112 4.112 16 C -0.082 4.082 17 C -0.086 4.086 18 C -0.007 4.007 19 C 0.010 3.990 20 C -0.102 4.102 21 N -0.308 5.308 22 C 0.276 3.724 23 O -0.423 6.423 24 C -0.044 4.044 25 H 0.149 0.851 26 C -0.190 4.190 27 N -0.193 5.193 28 C -0.131 4.131 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.171 0.829 34 H 0.196 0.804 35 H 0.153 0.847 36 H 0.256 0.744 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 6.796 -10.970 21.490 25.067 hybrid contribution -0.765 2.021 -0.961 2.365 sum 6.031 -8.949 20.530 23.193 Atomic orbital electron populations 1.21997 0.96667 1.00636 1.00771 1.20401 0.92073 0.92119 0.78956 0.97553 1.21328 1.33277 1.13938 0.89637 0.90946 1.25852 0.94735 0.95673 1.02237 1.70027 1.36737 1.23754 1.25163 0.85116 0.78313 0.78469 0.77400 1.18335 1.19768 1.20417 1.86522 1.76083 1.42928 1.21006 1.21723 0.74080 0.85020 0.85303 1.90760 1.50639 1.17793 1.85353 1.18977 1.06462 0.95454 0.90277 1.21582 0.94593 0.92205 0.99780 1.21030 0.97214 1.01937 0.88421 1.18855 0.99523 0.88575 0.93725 1.18084 1.02422 0.91676 0.86861 1.20612 0.99413 1.00424 0.89765 1.43995 1.49257 1.20740 1.16837 1.22514 0.77822 0.90284 0.81755 1.90748 1.60164 1.62881 1.28520 1.22224 0.97307 0.85315 0.99590 0.85130 1.21833 1.03305 1.02505 0.91369 1.59240 1.17853 1.38212 1.04032 1.22796 0.91535 1.00333 0.98417 0.90069 0.93156 0.95923 0.92038 0.82918 0.80350 0.84682 0.74444 0.88004 0.90894 0.91421 0.88736 0.87254 0.96230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.29 9.33 71.98 0.67 -6.62 16 2 C 0.22 11.83 2.57 29.85 0.08 11.91 16 3 H 0.01 0.41 7.16 -2.38 -0.02 0.39 16 4 C -0.54 -30.23 8.90 25.60 0.23 -30.00 16 5 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -52.36 11.32 21.45 0.24 -52.11 16 8 Si 0.98 42.05 29.54 68.60 2.03 44.07 16 9 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 11 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 12 O -0.35 -16.39 9.10 -56.70 -0.52 -16.91 16 13 C 0.49 20.92 7.86 70.23 0.55 21.47 16 14 O -0.55 -26.97 15.60 19.78 0.31 -26.67 16 15 C -0.11 -3.39 5.88 -20.08 -0.12 -3.51 16 16 C -0.06 -1.47 9.60 22.52 0.22 -1.26 16 17 C -0.07 -1.14 9.94 22.35 0.22 -0.91 16 18 C 0.09 1.65 4.85 38.59 0.19 1.84 16 19 C 0.11 2.32 6.49 38.10 0.25 2.57 16 20 C -0.08 -2.17 9.48 22.61 0.21 -1.95 16 21 N -0.66 -13.61 5.49 -302.63 -1.66 -15.27 16 22 C 0.49 10.21 6.89 87.59 0.60 10.81 16 23 O -0.55 -14.61 16.95 -3.07 -0.05 -14.66 16 24 C 0.07 0.98 3.06 44.22 0.14 1.12 16 25 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 26 C -0.13 -1.40 8.00 71.98 0.58 -0.82 16 27 N -0.47 -6.62 4.76 -700.47 -3.34 -9.95 16 28 C 0.01 0.15 8.60 127.69 1.10 1.25 16 29 H 0.08 4.46 6.07 -2.39 -0.01 4.44 16 30 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.15 3.59 7.60 -2.91 -0.02 3.57 16 34 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.14 3.77 7.65 -2.91 -0.02 3.75 16 36 H 0.42 7.93 8.90 -92.72 -0.83 7.11 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 0.89 7.85 -2.39 -0.02 0.87 16 39 H 0.07 0.70 6.28 -2.39 -0.02 0.69 16 40 H 0.09 0.87 8.12 -2.39 -0.02 0.85 16 41 H 0.11 0.77 6.10 -2.39 -0.01 0.75 16 42 H 0.02 0.28 7.62 -2.39 -0.02 0.26 16 Total: -1.00 -70.55 350.92 2.61 -67.94 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.24 Total: 16.44 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 5.36 Total: 7.12 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -4.76 Total: -77.34 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -0.26 Total: -58.24 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -70.55 2.61 -67.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750708420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.218 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds