Wall clock time and date at job start Tue Mar 31 2020 12:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47572 * 2 1 4 4 C 1.50701 * 109.46975 * 120.00693 * 2 1 3 5 5 H 1.07995 * 120.00192 * 119.99605 * 4 2 1 6 6 C 1.37874 * 119.99542 * 299.99576 * 4 2 1 7 7 N 1.31512 * 120.00508 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99973 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47081 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47403 * 119.99708 * 8 6 4 11 11 H 1.48501 * 109.47326 * 240.00012 * 8 6 4 12 12 O 1.45206 * 109.46788 * 240.00216 * 2 1 3 13 13 C 1.34756 * 116.99995 * 90.00493 * 12 2 1 14 14 O 1.21519 * 120.00442 * 359.97438 * 13 12 2 15 15 C 1.47390 * 120.00160 * 179.97438 * 13 12 2 16 16 C 1.39840 * 120.08484 * 0.02562 * 15 13 12 17 17 C 1.37657 * 120.14361 * 180.34352 * 16 15 13 18 18 C 1.39138 * 120.18113 * 359.47531 * 17 16 15 19 19 C 1.39800 * 119.85537 * 0.44486 * 18 17 16 20 20 C 1.38001 * 120.23036 * 359.83820 * 19 18 17 21 21 N 1.40369 * 119.45640 * 179.97438 * 19 18 17 22 22 C 1.35146 * 118.51209 * 18.15026 * 21 19 18 23 23 O 1.21292 * 120.32109 * 180.76403 * 22 21 19 24 24 C 1.50692 * 119.36223 * 0.74850 * 22 21 19 25 25 H 1.08999 * 109.37534 * 204.82926 * 24 22 21 26 26 C 1.53003 * 109.37830 * 85.18245 * 24 22 21 27 27 N 1.39043 * 119.98602 * 180.02562 * 18 17 16 28 28 C 1.46896 * 111.00042 * 269.15819 * 27 18 17 29 29 H 1.08998 * 109.47278 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46716 * 299.99937 * 1 2 3 31 31 H 1.09003 * 109.46984 * 59.99489 * 1 2 3 32 32 H 0.96996 * 120.00754 * 180.02562 * 7 6 4 33 33 H 1.08002 * 119.92506 * 0.05906 * 16 15 13 34 34 H 1.07995 * 119.91300 * 179.75355 * 17 16 15 35 35 H 1.07995 * 120.12046 * 179.97438 * 20 19 18 36 36 H 0.96998 * 120.74289 * 198.17536 * 21 19 18 37 37 H 1.09001 * 109.46991 * 59.99372 * 26 24 22 38 38 H 1.09000 * 109.47200 * 180.02562 * 26 24 22 39 39 H 1.09000 * 109.46666 * 299.99993 * 26 24 22 40 40 H 1.09006 * 109.46981 * 294.75307 * 28 27 18 41 41 H 1.08993 * 109.47581 * 54.75499 * 28 27 18 42 42 H 1.08997 * 109.47309 * 174.75862 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9437 0.8301 2.6034 8 14 2.3224 -1.1198 4.0078 9 1 3.1472 -2.2866 3.6037 10 1 3.1473 -0.1861 4.8160 11 1 1.1677 -1.5868 4.8164 12 8 2.0140 -0.6845 -1.1856 13 6 2.2180 0.0670 -2.2855 14 8 1.9971 1.2616 -2.2548 15 6 2.7091 -0.5599 -3.5257 16 6 2.9634 -1.9344 -3.5633 17 6 3.4288 -2.5200 -4.7189 18 6 3.6381 -1.7494 -5.8583 19 6 3.3835 -0.3751 -5.8255 20 6 2.9224 0.2186 -4.6682 21 7 3.5981 0.3944 -6.9797 22 6 3.6813 -0.2386 -8.1708 23 8 3.8799 0.3928 -9.1872 24 6 3.5252 -1.7364 -8.2241 25 1 4.0339 -2.1218 -9.1077 26 6 2.0386 -2.0895 -8.3028 27 7 4.1078 -2.3451 -7.0236 28 6 5.5755 -2.3144 -7.0758 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7096 1.1617 3.4844 33 1 2.7987 -2.5371 -2.6823 34 1 3.6278 -3.5812 -4.7426 35 1 2.7267 1.2804 -4.6447 36 1 3.6851 1.3589 -6.9235 37 1 1.6069 -1.6462 -9.2001 38 1 1.9239 -3.1728 -8.3409 39 1 1.5259 -1.7010 -7.4229 40 1 5.9152 -1.2808 -7.1433 41 1 5.9809 -2.7718 -6.1734 42 1 5.9196 -2.8677 -7.9496 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750708423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:04 Heat of formation + Delta-G solvation = -83.420343 kcal Electronic energy + Delta-G solvation = -26447.118532 eV Core-core repulsion = 22585.322429 eV Total energy + Delta-G solvation = -3861.796103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.90708 -39.75920 -38.70276 -37.00676 -35.70862 -35.29834 -33.30360 -32.01920 -30.60785 -29.99385 -29.22704 -26.24572 -25.36755 -24.80546 -23.55409 -23.07031 -21.90261 -20.39271 -19.06727 -18.48694 -18.01238 -16.86663 -16.61917 -16.35514 -15.89739 -15.71037 -15.26554 -15.06428 -15.00633 -14.55412 -14.44557 -14.09638 -13.64471 -13.47830 -13.21425 -12.81929 -12.76434 -12.52344 -12.27231 -12.05568 -11.94754 -11.77210 -11.59934 -11.29936 -11.11971 -10.98126 -10.88348 -10.83704 -10.40568 -10.32435 -9.85888 -9.61718 -9.47481 -8.95318 -8.81252 -8.54016 -8.25023 -6.22612 -4.29773 0.53577 1.00857 2.04656 2.53832 2.84998 3.18128 3.21160 3.27988 3.32196 3.51829 3.76732 3.81572 4.29445 4.39372 4.46524 4.66903 4.85747 4.95667 5.05081 5.09979 5.10673 5.12081 5.24124 5.36652 5.38333 5.45317 5.57140 5.72155 5.82239 5.99877 6.12678 6.27574 6.30948 6.42899 6.56156 6.61136 6.84862 6.85739 6.91702 7.07690 7.54066 7.54556 7.67012 7.86544 8.08012 8.52959 8.81501 9.35861 10.84919 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027418 B = 0.002776 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.999308 B =10085.585195 C =10525.231617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.048 0.952 4 C -0.521 4.521 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.348 6.348 13 C 0.495 3.505 14 O -0.515 6.515 15 C -0.085 4.085 16 C -0.069 4.069 17 C -0.085 4.085 18 C 0.080 3.920 19 C 0.106 3.894 20 C -0.080 4.080 21 N -0.661 5.661 22 C 0.493 3.507 23 O -0.523 6.523 24 C 0.069 3.931 25 H 0.126 0.874 26 C -0.141 4.141 27 N -0.485 5.485 28 C 0.023 3.977 29 H 0.038 0.962 30 H 0.100 0.900 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.414 0.586 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.084 0.916 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.683 -7.922 -19.181 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.739 3.261 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.264 6.264 13 C 0.339 3.661 14 O -0.406 6.406 15 C -0.087 4.087 16 C -0.088 4.088 17 C -0.105 4.105 18 C -0.017 4.017 19 C 0.008 3.992 20 C -0.102 4.102 21 N -0.308 5.308 22 C 0.280 3.720 23 O -0.396 6.396 24 C -0.042 4.042 25 H 0.144 0.856 26 C -0.199 4.199 27 N -0.205 5.205 28 C -0.122 4.122 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.253 0.747 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.103 0.897 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.509 -7.771 -19.652 21.839 hybrid contribution 0.420 1.168 0.962 1.571 sum 5.928 -6.603 -18.690 20.689 Atomic orbital electron populations 1.22174 0.97428 1.00235 1.01487 1.20702 0.91464 0.93985 0.77483 0.93456 1.21049 1.32542 1.13543 0.88762 0.91138 1.24891 0.94902 0.95091 0.99109 1.69901 1.36058 1.22528 1.24154 0.86214 0.78642 0.79491 0.81758 1.19420 1.20762 1.20704 1.86545 1.75684 1.43112 1.21042 1.20831 0.75235 0.85271 0.84721 1.90790 1.48746 1.16250 1.84822 1.19258 1.03206 0.94105 0.92106 1.21533 0.95065 0.93628 0.98588 1.20796 0.99047 1.00217 0.90428 1.18573 1.02111 0.88869 0.92188 1.18086 1.02980 0.90687 0.87401 1.20727 0.98131 1.01071 0.90238 1.43913 1.70555 1.10900 1.05432 1.21927 0.75438 0.92119 0.82565 1.90774 1.46961 1.68710 1.33177 1.22169 0.99855 0.87334 0.94844 0.85573 1.21780 0.91363 1.03774 1.02961 1.59099 1.08284 1.53517 0.99574 1.22563 0.84437 1.00978 1.04266 0.94297 0.88168 0.96480 0.92397 0.83095 0.83822 0.83866 0.74681 0.91024 0.89737 0.91749 0.94895 0.89748 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.33 37.16 0.35 -3.50 16 2 C 0.22 5.63 2.56 -27.88 -0.07 5.56 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.19 8.90 -34.44 -0.31 -14.50 16 5 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.78 11.32 55.43 0.63 -24.16 16 8 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 O -0.35 -7.89 9.10 -40.64 -0.37 -8.26 16 13 C 0.50 10.07 7.86 34.46 0.27 10.34 16 14 O -0.51 -11.82 15.60 -19.28 -0.30 -12.12 16 15 C -0.08 -1.29 5.88 -104.96 -0.62 -1.91 16 16 C -0.07 -0.86 9.60 -39.19 -0.38 -1.24 16 17 C -0.09 -0.86 9.94 -39.46 -0.39 -1.25 16 18 C 0.08 0.83 3.99 -83.67 -0.33 0.49 16 19 C 0.11 1.19 6.17 -83.45 -0.52 0.68 16 20 C -0.08 -1.06 9.48 -39.05 -0.37 -1.43 16 21 N -0.66 -7.02 5.49 -9.65 -0.05 -7.07 16 22 C 0.49 5.52 6.37 -10.82 -0.07 5.45 16 23 O -0.52 -7.38 17.96 5.55 0.10 -7.28 16 24 C 0.07 0.60 2.73 -69.00 -0.19 0.41 16 25 H 0.13 0.92 7.99 -51.93 -0.42 0.50 16 26 C -0.14 -1.11 9.17 37.16 0.34 -0.77 16 27 N -0.49 -4.20 4.61 -172.71 -0.80 -4.99 16 28 C 0.02 0.17 9.34 60.06 0.56 0.73 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 2.66 6.07 -51.93 -0.32 2.34 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.15 1.88 7.60 -52.49 -0.40 1.48 16 34 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.14 1.88 7.65 -52.49 -0.40 1.48 16 36 H 0.41 3.93 8.90 -40.82 -0.36 3.57 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.59 7.29 -51.93 -0.38 0.22 16 40 H 0.03 0.28 7.59 -51.93 -0.39 -0.12 16 41 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 42 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -31.72 354.75 -7.82 -39.54 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.54 Total: 2.79 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.81 Total: 0.65 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.22 Total: -36.22 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.57 Total: -27.66 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.72 -7.82 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750708423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.880 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds