Wall clock time and date at job start Tue Mar 31 2020 12:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47572 * 2 1 4 4 C 1.50701 * 109.46975 * 120.00693 * 2 1 3 5 5 H 1.07995 * 120.00192 * 119.99605 * 4 2 1 6 6 C 1.37874 * 119.99542 * 299.99576 * 4 2 1 7 7 N 1.31512 * 120.00508 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99973 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47081 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47403 * 119.99708 * 8 6 4 11 11 H 1.48501 * 109.47326 * 240.00012 * 8 6 4 12 12 O 1.45206 * 109.46788 * 240.00216 * 2 1 3 13 13 C 1.34756 * 116.99995 * 90.00493 * 12 2 1 14 14 O 1.21519 * 120.00442 * 359.97438 * 13 12 2 15 15 C 1.47390 * 120.00160 * 179.97438 * 13 12 2 16 16 C 1.39840 * 120.08484 * 0.02562 * 15 13 12 17 17 C 1.37657 * 120.14361 * 180.34352 * 16 15 13 18 18 C 1.39138 * 120.18113 * 359.47531 * 17 16 15 19 19 C 1.39800 * 119.85537 * 0.44486 * 18 17 16 20 20 C 1.38001 * 120.23036 * 359.83820 * 19 18 17 21 21 N 1.40369 * 119.45640 * 179.97438 * 19 18 17 22 22 C 1.35146 * 118.51209 * 18.15026 * 21 19 18 23 23 O 1.21292 * 120.32109 * 180.76403 * 22 21 19 24 24 C 1.50692 * 119.36223 * 0.74850 * 22 21 19 25 25 H 1.08999 * 109.37534 * 204.82926 * 24 22 21 26 26 C 1.53003 * 109.37830 * 85.18245 * 24 22 21 27 27 N 1.39043 * 119.98602 * 180.02562 * 18 17 16 28 28 C 1.46896 * 111.00042 * 269.15819 * 27 18 17 29 29 H 1.08998 * 109.47278 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46716 * 299.99937 * 1 2 3 31 31 H 1.09003 * 109.46984 * 59.99489 * 1 2 3 32 32 H 0.96996 * 120.00754 * 180.02562 * 7 6 4 33 33 H 1.08002 * 119.92506 * 0.05906 * 16 15 13 34 34 H 1.07995 * 119.91300 * 179.75355 * 17 16 15 35 35 H 1.07995 * 120.12046 * 179.97438 * 20 19 18 36 36 H 0.96998 * 120.74289 * 198.17536 * 21 19 18 37 37 H 1.09001 * 109.46991 * 59.99372 * 26 24 22 38 38 H 1.09000 * 109.47200 * 180.02562 * 26 24 22 39 39 H 1.09000 * 109.46666 * 299.99993 * 26 24 22 40 40 H 1.09006 * 109.46981 * 294.75307 * 28 27 18 41 41 H 1.08993 * 109.47581 * 54.75499 * 28 27 18 42 42 H 1.08997 * 109.47309 * 174.75862 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9437 0.8301 2.6034 8 14 2.3224 -1.1198 4.0078 9 1 3.1472 -2.2866 3.6037 10 1 3.1473 -0.1861 4.8160 11 1 1.1677 -1.5868 4.8164 12 8 2.0140 -0.6845 -1.1856 13 6 2.2180 0.0670 -2.2855 14 8 1.9971 1.2616 -2.2548 15 6 2.7091 -0.5599 -3.5257 16 6 2.9634 -1.9344 -3.5633 17 6 3.4288 -2.5200 -4.7189 18 6 3.6381 -1.7494 -5.8583 19 6 3.3835 -0.3751 -5.8255 20 6 2.9224 0.2186 -4.6682 21 7 3.5981 0.3944 -6.9797 22 6 3.6813 -0.2386 -8.1708 23 8 3.8799 0.3928 -9.1872 24 6 3.5252 -1.7364 -8.2241 25 1 4.0339 -2.1218 -9.1077 26 6 2.0386 -2.0895 -8.3028 27 7 4.1078 -2.3451 -7.0236 28 6 5.5755 -2.3144 -7.0758 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7096 1.1617 3.4844 33 1 2.7987 -2.5371 -2.6823 34 1 3.6278 -3.5812 -4.7426 35 1 2.7267 1.2804 -4.6447 36 1 3.6851 1.3589 -6.9235 37 1 1.6069 -1.6462 -9.2001 38 1 1.9239 -3.1728 -8.3409 39 1 1.5259 -1.7010 -7.4229 40 1 5.9152 -1.2808 -7.1433 41 1 5.9809 -2.7718 -6.1734 42 1 5.9196 -2.8677 -7.9496 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750708423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:03 Heat of formation + Delta-G solvation = -104.030290 kcal Electronic energy + Delta-G solvation = -26448.012246 eV Core-core repulsion = 22585.322429 eV Total energy + Delta-G solvation = -3862.689817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.78535 -41.32321 -39.79227 -38.03703 -37.39228 -36.24815 -35.30761 -32.83450 -31.81389 -31.43263 -30.45624 -27.46348 -27.04290 -25.70937 -24.53904 -24.12335 -23.28269 -22.00111 -20.19403 -19.64732 -18.96251 -18.65229 -18.04510 -17.35607 -17.19459 -16.93296 -16.66815 -16.48054 -16.06488 -15.83189 -15.46398 -14.99307 -14.94571 -14.47123 -14.29221 -14.22713 -13.89386 -13.79487 -13.38271 -13.27592 -13.18943 -13.01919 -12.81045 -12.70898 -12.51819 -12.49000 -12.38522 -12.12657 -11.95019 -11.74618 -11.60633 -11.51507 -10.98144 -10.60218 -10.39315 -9.70867 -9.18129 -8.27755 -6.44489 -0.55061 0.04746 1.13027 1.43970 1.44915 1.52041 1.58474 1.65130 1.96933 2.40338 2.45990 2.61753 2.96520 3.03625 3.55031 3.69390 3.78205 3.97933 4.03341 4.07031 4.24928 4.37006 4.44198 4.52112 4.65264 4.69881 4.76122 4.77262 4.79300 4.85608 4.93850 5.00028 5.14888 5.16924 5.23078 5.32428 5.48293 5.49351 5.53886 5.62094 5.73732 5.89784 6.05003 6.05966 6.60311 6.66569 6.89623 7.26992 8.80362 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027418 B = 0.002776 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.999308 B =10085.585195 C =10525.231617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.218 3.782 3 H 0.007 0.993 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.984 3.016 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.273 1.273 12 O -0.350 6.350 13 C 0.492 3.508 14 O -0.553 6.553 15 C -0.111 4.111 16 C -0.061 4.061 17 C -0.069 4.069 18 C 0.096 3.904 19 C 0.107 3.893 20 C -0.080 4.080 21 N -0.660 5.660 22 C 0.493 3.507 23 O -0.555 6.555 24 C 0.070 3.930 25 H 0.148 0.852 26 C -0.138 4.138 27 N -0.476 5.476 28 C 0.019 3.981 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.021 0.979 32 H 0.270 0.730 33 H 0.153 0.847 34 H 0.179 0.821 35 H 0.135 0.865 36 H 0.416 0.584 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.048 0.952 40 H 0.019 0.981 41 H 0.095 0.905 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -10.927 -20.273 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.582 4.582 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.807 3.193 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.198 1.198 12 O -0.266 6.266 13 C 0.339 3.661 14 O -0.446 6.446 15 C -0.113 4.113 16 C -0.081 4.081 17 C -0.088 4.088 18 C -0.002 4.002 19 C 0.010 3.990 20 C -0.102 4.102 21 N -0.306 5.306 22 C 0.280 3.720 23 O -0.431 6.431 24 C -0.041 4.041 25 H 0.166 0.834 26 C -0.196 4.196 27 N -0.196 5.196 28 C -0.126 4.126 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.170 0.830 34 H 0.196 0.804 35 H 0.153 0.847 36 H 0.256 0.744 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.067 0.933 40 H 0.038 0.962 41 H 0.113 0.887 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.642 -10.790 -20.763 24.324 hybrid contribution 0.113 2.120 1.140 2.410 sum 6.754 -8.671 -19.623 22.491 Atomic orbital electron populations 1.22001 0.96716 1.00630 1.00761 1.20398 0.92046 0.92125 0.78952 0.97525 1.21331 1.33302 1.13949 0.89641 0.90923 1.25848 0.94729 0.95666 1.02231 1.70026 1.36737 1.23745 1.25163 0.85115 0.78312 0.78467 0.77400 1.18324 1.20409 1.19793 1.86521 1.76092 1.42927 1.21027 1.21723 0.74119 0.84995 0.85273 1.90760 1.50591 1.17870 1.85358 1.18967 1.06599 0.95484 0.90237 1.21577 0.94596 0.92196 0.99718 1.21027 0.97315 1.01578 0.88925 1.18815 1.00155 0.88229 0.92990 1.18054 1.02842 0.91303 0.86842 1.20608 0.98410 1.00700 0.90463 1.43962 1.70089 1.11224 1.05331 1.22466 0.74403 0.93186 0.81905 1.90763 1.48569 1.69635 1.34111 1.22346 1.00795 0.85334 0.95600 0.83414 1.21796 0.90417 1.04957 1.02441 1.59234 1.09246 1.52360 0.98716 1.22710 0.83052 1.00720 1.06081 0.93167 0.90061 0.95954 0.92038 0.82972 0.80396 0.84722 0.74431 0.90620 0.87824 0.93320 0.96189 0.88673 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.33 9.33 71.98 0.67 -6.65 16 2 C 0.22 11.84 2.56 29.85 0.08 11.91 16 3 H 0.01 0.42 7.16 -2.39 -0.02 0.41 16 4 C -0.54 -30.21 8.90 25.60 0.23 -29.98 16 5 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -52.29 11.32 21.45 0.24 -52.04 16 8 Si 0.98 41.95 29.54 68.60 2.03 43.97 16 9 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 O -0.35 -16.39 9.10 -56.66 -0.52 -16.91 16 13 C 0.49 20.89 7.86 70.23 0.55 21.44 16 14 O -0.55 -26.96 15.60 19.77 0.31 -26.65 16 15 C -0.11 -3.41 5.88 -20.08 -0.12 -3.53 16 16 C -0.06 -1.45 9.60 22.52 0.22 -1.23 16 17 C -0.07 -1.17 9.94 22.35 0.22 -0.94 16 18 C 0.10 1.71 3.99 38.59 0.15 1.86 16 19 C 0.11 2.30 6.17 38.09 0.24 2.53 16 20 C -0.08 -2.15 9.48 22.61 0.21 -1.93 16 21 N -0.66 -13.48 5.49 -302.63 -1.66 -15.14 16 22 C 0.49 10.27 6.37 87.60 0.56 10.82 16 23 O -0.55 -15.14 17.96 -3.07 -0.06 -15.19 16 24 C 0.07 1.01 2.73 44.21 0.12 1.13 16 25 H 0.15 1.58 7.99 -2.39 -0.02 1.56 16 26 C -0.14 -1.79 9.17 71.98 0.66 -1.13 16 27 N -0.48 -6.48 4.61 -700.33 -3.23 -9.71 16 28 C 0.02 0.21 9.34 127.69 1.19 1.40 16 29 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.08 4.46 6.07 -2.39 -0.01 4.45 16 31 H 0.02 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.15 3.58 7.60 -2.91 -0.02 3.55 16 34 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.13 3.75 7.65 -2.91 -0.02 3.73 16 36 H 0.42 7.92 8.90 -92.71 -0.83 7.10 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.05 0.79 7.29 -2.39 -0.02 0.77 16 40 H 0.02 0.28 7.59 -2.38 -0.02 0.26 16 41 H 0.09 0.87 8.11 -2.39 -0.02 0.85 16 42 H 0.11 0.69 8.10 -2.39 -0.02 0.68 16 Total: -1.00 -70.86 354.75 2.78 -68.08 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.23 Total: 16.64 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 5.43 Total: 6.96 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -4.64 Total: -76.90 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -0.26 Total: -58.75 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -70.86 2.78 -68.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750708423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.950 kcal (2) G-P(sol) polarization free energy of solvation -70.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds