Wall clock time and date at job start Tue Mar 31 2020 12:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47013 * 2 1 4 4 C 1.50699 * 109.47206 * 120.00437 * 2 1 3 5 5 H 1.07997 * 120.00362 * 120.00405 * 4 2 1 6 6 C 1.37878 * 119.99871 * 299.99393 * 4 2 1 7 7 N 1.31510 * 119.99914 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00007 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47000 * 90.00225 * 8 6 4 10 10 H 1.48499 * 109.47116 * 210.00212 * 8 6 4 11 11 H 1.48494 * 109.47340 * 330.00194 * 8 6 4 12 12 O 1.45203 * 109.46673 * 240.00144 * 2 1 3 13 13 C 1.34762 * 117.00009 * 90.00152 * 12 2 1 14 14 O 1.21518 * 119.99940 * 359.97438 * 13 12 2 15 15 C 1.47393 * 119.99965 * 179.97438 * 13 12 2 16 16 C 1.39829 * 120.08685 * 0.25042 * 15 13 12 17 17 C 1.37660 * 120.14485 * 180.36188 * 16 15 13 18 18 C 1.39129 * 120.17613 * 359.39596 * 17 16 15 19 19 C 1.39796 * 119.86399 * 0.23063 * 18 17 16 20 20 C 1.38010 * 120.22258 * 0.13824 * 19 18 17 21 21 N 1.40365 * 119.45957 * 180.25535 * 19 18 17 22 22 C 1.35158 * 118.50626 * 18.12880 * 21 19 18 23 23 O 1.21291 * 120.31210 * 180.74448 * 22 21 19 24 24 C 1.50683 * 119.37418 * 0.72751 * 22 21 19 25 25 H 1.08996 * 109.28361 * 85.14688 * 24 22 21 26 26 C 1.52999 * 109.37985 * 204.85998 * 24 22 21 27 27 N 1.39048 * 119.98056 * 180.02562 * 18 17 16 28 28 C 1.46894 * 110.99600 * 19.51442 * 27 18 17 29 29 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47002 * 299.99863 * 1 2 3 31 31 H 1.08992 * 109.47391 * 59.99497 * 1 2 3 32 32 H 0.97009 * 120.00075 * 179.97438 * 7 6 4 33 33 H 1.08000 * 119.93185 * 0.10399 * 16 15 13 34 34 H 1.08002 * 119.91575 * 179.68222 * 17 16 15 35 35 H 1.08001 * 120.11635 * 179.85132 * 20 19 18 36 36 H 0.96993 * 120.74974 * 198.17409 * 21 19 18 37 37 H 1.08994 * 109.47559 * 180.58057 * 26 24 22 38 38 H 1.09002 * 109.47114 * 300.58382 * 26 24 22 39 39 H 1.09006 * 109.47185 * 60.57396 * 26 24 22 40 40 H 1.08997 * 109.47537 * 56.04698 * 28 27 18 41 41 H 1.09004 * 109.46915 * 176.04470 * 28 27 18 42 42 H 1.09001 * 109.47423 * 296.03712 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.6306 -0.5442 4.4117 10 1 1.3446 -0.9491 5.1122 11 1 2.4881 -2.5654 3.7121 12 8 2.0139 -0.6845 -1.1856 13 6 2.2178 0.0670 -2.2855 14 8 1.9969 1.2615 -2.2548 15 6 2.7089 -0.5600 -3.5258 16 6 2.9588 -1.9352 -3.5647 17 6 3.4245 -2.5208 -4.7202 18 6 3.6370 -1.7496 -5.8586 19 6 3.3810 -0.3756 -5.8263 20 6 2.9212 0.2184 -4.6685 21 7 3.5932 0.3934 -6.9812 22 6 3.6758 -0.2405 -8.1721 23 8 3.8719 0.3906 -9.1891 24 6 3.5222 -1.7385 -8.2242 25 1 2.4631 -1.9902 -8.2781 26 6 4.2361 -2.2792 -9.4648 27 7 4.1070 -2.3454 -7.0237 28 6 3.8781 -3.7962 -7.0023 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.7084 1.1608 3.4845 33 1 2.7900 -2.5387 -2.6851 34 1 3.6212 -3.5825 -4.7446 35 1 2.7263 1.2804 -4.6448 36 1 3.6792 1.3579 -6.9259 37 1 4.1172 -3.3617 -9.5096 38 1 3.8033 -1.8289 -10.3581 39 1 5.2963 -2.0319 -9.4106 40 1 2.8180 -3.9945 -6.8444 41 1 4.1907 -4.2274 -7.9534 42 1 4.4558 -4.2434 -6.1934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750708425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:08 Heat of formation + Delta-G solvation = -79.866230 kcal Electronic energy + Delta-G solvation = -26251.394263 eV Core-core repulsion = 22389.752278 eV Total energy + Delta-G solvation = -3861.641985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.74859 -39.70872 -38.81900 -37.25735 -35.71016 -35.37394 -33.27967 -32.21895 -30.08971 -29.88856 -29.08883 -27.55059 -25.34866 -24.22428 -23.51244 -22.79104 -21.63509 -20.34741 -19.08989 -18.66542 -17.99982 -17.04780 -16.77499 -16.39961 -16.22712 -15.61881 -15.07074 -14.82361 -14.76226 -14.54362 -14.47546 -14.41422 -13.95261 -13.37282 -13.05993 -12.94576 -12.76929 -12.37802 -12.32121 -12.15268 -11.92540 -11.89887 -11.35054 -11.27942 -11.07975 -10.91088 -10.86509 -10.49222 -10.39637 -10.30921 -10.26759 -9.79130 -9.58010 -8.93798 -8.75435 -8.51768 -7.88855 -6.20787 -4.27847 0.62753 1.03820 2.05151 2.61589 2.90122 3.16875 3.23277 3.28538 3.31932 3.54608 3.81278 3.84371 4.27457 4.31320 4.38144 4.55954 4.74039 4.91156 4.98956 5.06224 5.12027 5.14417 5.17677 5.28188 5.32585 5.41596 5.52426 5.69408 5.74284 6.01500 6.24248 6.28962 6.33359 6.39851 6.58705 6.64229 6.86762 6.88310 6.89245 7.11350 7.56372 7.61307 7.69450 7.89419 8.10493 8.57514 8.84052 9.37617 10.86695 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027931 B = 0.002704 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.246434 B =10352.812110 C =11027.308287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.350 6.350 13 C 0.498 3.502 14 O -0.518 6.518 15 C -0.109 4.109 16 C -0.047 4.047 17 C -0.149 4.149 18 C 0.105 3.895 19 C 0.100 3.900 20 C -0.062 4.062 21 N -0.658 5.658 22 C 0.529 3.471 23 O -0.516 6.516 24 C 0.066 3.934 25 H 0.087 0.913 26 C -0.135 4.135 27 N -0.482 5.482 28 C 0.016 3.984 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.417 0.583 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.484 -9.507 -20.282 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.266 6.266 13 C 0.342 3.658 14 O -0.409 6.409 15 C -0.112 4.112 16 C -0.067 4.067 17 C -0.170 4.170 18 C 0.004 3.996 19 C 0.003 3.997 20 C -0.083 4.083 21 N -0.305 5.305 22 C 0.315 3.685 23 O -0.390 6.390 24 C -0.044 4.044 25 H 0.104 0.896 26 C -0.192 4.192 27 N -0.197 5.197 28 C -0.130 4.130 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.256 0.744 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.932 -8.817 -20.838 23.158 hybrid contribution -0.434 0.166 1.135 1.226 sum 4.498 -8.651 -19.703 21.984 Atomic orbital electron populations 1.22169 0.97486 1.00172 1.01468 1.20675 0.91417 0.93988 0.77526 0.93473 1.21011 1.32541 1.13541 0.88808 0.91233 1.24889 0.94906 0.95111 0.99089 1.69898 1.35963 1.22584 1.24218 0.86266 0.78557 0.79880 0.81389 1.20396 1.20962 1.19569 1.86538 1.75804 1.43146 1.21073 1.20811 0.75087 0.85247 0.84658 1.90782 1.48984 1.16270 1.84858 1.19129 1.05681 0.94020 0.92344 1.21438 0.93495 0.93644 0.98076 1.20929 1.03986 1.00172 0.91920 1.18769 0.97128 0.91489 0.92180 1.17198 1.04989 0.89619 0.87880 1.20673 0.96806 1.00948 0.89860 1.43717 1.70781 1.10821 1.05145 1.20589 0.75235 0.89975 0.82685 1.90775 1.47038 1.67998 1.33205 1.21816 0.99955 0.90857 0.91744 0.89557 1.21765 1.01704 1.01067 0.94703 1.58334 1.55334 1.05953 1.00120 1.22717 1.01328 0.84460 1.04475 0.94364 0.88201 0.96476 0.92367 0.83314 0.83997 0.83683 0.74375 0.91022 0.90230 0.90976 0.93215 0.89714 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.33 37.16 0.35 -3.52 16 2 C 0.22 5.70 2.56 -27.88 -0.07 5.63 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.31 8.90 -34.44 -0.31 -14.62 16 5 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 8 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 O -0.35 -8.04 9.10 -40.66 -0.37 -8.41 16 13 C 0.50 10.30 7.86 34.46 0.27 10.57 16 14 O -0.52 -12.05 15.60 -19.28 -0.30 -12.35 16 15 C -0.11 -1.70 5.88 -104.96 -0.62 -2.32 16 16 C -0.05 -0.61 9.60 -39.20 -0.38 -0.98 16 17 C -0.15 -1.52 8.92 -39.46 -0.35 -1.87 16 18 C 0.11 1.13 5.91 -83.67 -0.49 0.64 16 19 C 0.10 1.18 6.49 -83.45 -0.54 0.64 16 20 C -0.06 -0.84 9.48 -39.05 -0.37 -1.21 16 21 N -0.66 -7.21 5.49 -9.66 -0.05 -7.26 16 22 C 0.53 6.02 7.66 -10.82 -0.08 5.94 16 23 O -0.52 -7.13 16.95 5.55 0.09 -7.04 16 24 C 0.07 0.57 2.56 -68.99 -0.18 0.40 16 25 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 26 C -0.13 -0.93 8.63 37.16 0.32 -0.60 16 27 N -0.48 -4.27 4.66 -172.71 -0.80 -5.07 16 28 C 0.02 0.09 8.30 60.06 0.50 0.59 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 2.66 6.07 -51.93 -0.32 2.35 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.15 1.90 7.60 -52.49 -0.40 1.50 16 34 H 0.14 1.04 5.95 -52.49 -0.31 0.73 16 35 H 0.15 1.92 7.65 -52.49 -0.40 1.52 16 36 H 0.42 4.00 8.90 -40.82 -0.36 3.63 16 37 H 0.07 0.32 6.31 -51.93 -0.33 0.00 16 38 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.25 7.98 -51.93 -0.41 -0.16 16 41 H 0.08 0.34 6.01 -51.93 -0.31 0.02 16 42 H 0.09 0.43 6.78 -51.93 -0.35 0.08 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -32.44 348.28 -7.84 -40.28 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.21 Total: 2.37 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.05 Total: 0.86 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.23 Total: -36.66 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.58 Total: -27.79 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.44 -7.84 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750708425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.586 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds