Wall clock time and date at job start Tue Mar 31 2020 12:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47013 * 2 1 4 4 C 1.50699 * 109.47206 * 120.00437 * 2 1 3 5 5 H 1.07997 * 120.00362 * 120.00405 * 4 2 1 6 6 C 1.37878 * 119.99871 * 299.99393 * 4 2 1 7 7 N 1.31510 * 119.99914 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00007 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47000 * 90.00225 * 8 6 4 10 10 H 1.48499 * 109.47116 * 210.00212 * 8 6 4 11 11 H 1.48494 * 109.47340 * 330.00194 * 8 6 4 12 12 O 1.45203 * 109.46673 * 240.00144 * 2 1 3 13 13 C 1.34762 * 117.00009 * 90.00152 * 12 2 1 14 14 O 1.21518 * 119.99940 * 359.97438 * 13 12 2 15 15 C 1.47393 * 119.99965 * 179.97438 * 13 12 2 16 16 C 1.39829 * 120.08685 * 0.25042 * 15 13 12 17 17 C 1.37660 * 120.14485 * 180.36188 * 16 15 13 18 18 C 1.39129 * 120.17613 * 359.39596 * 17 16 15 19 19 C 1.39796 * 119.86399 * 0.23063 * 18 17 16 20 20 C 1.38010 * 120.22258 * 0.13824 * 19 18 17 21 21 N 1.40365 * 119.45957 * 180.25535 * 19 18 17 22 22 C 1.35158 * 118.50626 * 18.12880 * 21 19 18 23 23 O 1.21291 * 120.31210 * 180.74448 * 22 21 19 24 24 C 1.50683 * 119.37418 * 0.72751 * 22 21 19 25 25 H 1.08996 * 109.28361 * 85.14688 * 24 22 21 26 26 C 1.52999 * 109.37985 * 204.85998 * 24 22 21 27 27 N 1.39048 * 119.98056 * 180.02562 * 18 17 16 28 28 C 1.46894 * 110.99600 * 19.51442 * 27 18 17 29 29 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47002 * 299.99863 * 1 2 3 31 31 H 1.08992 * 109.47391 * 59.99497 * 1 2 3 32 32 H 0.97009 * 120.00075 * 179.97438 * 7 6 4 33 33 H 1.08000 * 119.93185 * 0.10399 * 16 15 13 34 34 H 1.08002 * 119.91575 * 179.68222 * 17 16 15 35 35 H 1.08001 * 120.11635 * 179.85132 * 20 19 18 36 36 H 0.96993 * 120.74974 * 198.17409 * 21 19 18 37 37 H 1.08994 * 109.47559 * 180.58057 * 26 24 22 38 38 H 1.09002 * 109.47114 * 300.58382 * 26 24 22 39 39 H 1.09006 * 109.47185 * 60.57396 * 26 24 22 40 40 H 1.08997 * 109.47537 * 56.04698 * 28 27 18 41 41 H 1.09004 * 109.46915 * 176.04470 * 28 27 18 42 42 H 1.09001 * 109.47423 * 296.03712 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.6306 -0.5442 4.4117 10 1 1.3446 -0.9491 5.1122 11 1 2.4881 -2.5654 3.7121 12 8 2.0139 -0.6845 -1.1856 13 6 2.2178 0.0670 -2.2855 14 8 1.9969 1.2615 -2.2548 15 6 2.7089 -0.5600 -3.5258 16 6 2.9588 -1.9352 -3.5647 17 6 3.4245 -2.5208 -4.7202 18 6 3.6370 -1.7496 -5.8586 19 6 3.3810 -0.3756 -5.8263 20 6 2.9212 0.2184 -4.6685 21 7 3.5932 0.3934 -6.9812 22 6 3.6758 -0.2405 -8.1721 23 8 3.8719 0.3906 -9.1891 24 6 3.5222 -1.7385 -8.2242 25 1 2.4631 -1.9902 -8.2781 26 6 4.2361 -2.2792 -9.4648 27 7 4.1070 -2.3454 -7.0237 28 6 3.8781 -3.7962 -7.0023 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.7084 1.1608 3.4845 33 1 2.7900 -2.5387 -2.6851 34 1 3.6212 -3.5825 -4.7446 35 1 2.7263 1.2804 -4.6448 36 1 3.6792 1.3579 -6.9259 37 1 4.1172 -3.3617 -9.5096 38 1 3.8033 -1.8289 -10.3581 39 1 5.2963 -2.0319 -9.4106 40 1 2.8180 -3.9945 -6.8444 41 1 4.1907 -4.2274 -7.9534 42 1 4.4558 -4.2434 -6.1934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750708425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:07 Heat of formation + Delta-G solvation = -101.393981 kcal Electronic energy + Delta-G solvation = -26252.327777 eV Core-core repulsion = 22389.752278 eV Total energy + Delta-G solvation = -3862.575499 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.61839 -41.26441 -39.88866 -38.19696 -37.42592 -36.37487 -35.29646 -33.05367 -31.72603 -31.01845 -30.11071 -28.27598 -27.44233 -25.29568 -24.41465 -23.85554 -22.94694 -21.88565 -20.21445 -19.70913 -19.00060 -18.67610 -18.06716 -17.65958 -17.28106 -17.04557 -16.75606 -16.43890 -15.72451 -15.50828 -15.35340 -15.26292 -15.02716 -14.69952 -14.28283 -14.11710 -13.84046 -13.66179 -13.59296 -13.19873 -13.04464 -12.92861 -12.89909 -12.82043 -12.47470 -12.37029 -12.15930 -12.13380 -11.88439 -11.60227 -11.51837 -11.30483 -11.11704 -10.97720 -10.59094 -9.68776 -8.77087 -8.27306 -6.44110 -0.45499 0.07491 1.12470 1.43833 1.46027 1.57185 1.60673 1.70844 2.03739 2.38358 2.44292 2.68216 2.98016 3.03905 3.43909 3.73431 3.81195 3.93756 3.99417 4.09040 4.20392 4.41780 4.49107 4.53928 4.63922 4.66223 4.72634 4.79300 4.80118 4.84656 4.98768 5.05458 5.18030 5.22069 5.28140 5.39343 5.45872 5.49658 5.60828 5.63472 5.77552 5.91261 6.02045 6.06807 6.61035 6.73312 6.93457 7.27420 8.80628 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027931 B = 0.002704 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.246434 B =10352.812110 C =11027.308287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.218 3.782 3 H 0.006 0.994 4 C -0.545 4.545 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.984 3.016 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.259 1.259 12 O -0.352 6.352 13 C 0.493 3.507 14 O -0.556 6.556 15 C -0.140 4.140 16 C -0.041 4.041 17 C -0.135 4.135 18 C 0.122 3.878 19 C 0.095 3.905 20 C -0.061 4.061 21 N -0.658 5.658 22 C 0.522 3.478 23 O -0.546 6.546 24 C 0.067 3.933 25 H 0.105 0.895 26 C -0.130 4.130 27 N -0.486 5.486 28 C 0.007 3.993 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.021 0.979 32 H 0.270 0.730 33 H 0.150 0.850 34 H 0.182 0.818 35 H 0.137 0.863 36 H 0.419 0.581 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 -12.990 -21.464 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.023 0.977 4 C -0.583 4.583 5 H 0.090 0.910 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.807 3.193 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.183 1.183 12 O -0.268 6.268 13 C 0.341 3.659 14 O -0.450 6.450 15 C -0.143 4.143 16 C -0.060 4.060 17 C -0.156 4.156 18 C 0.020 3.980 19 C -0.002 4.002 20 C -0.083 4.083 21 N -0.304 5.304 22 C 0.310 3.690 23 O -0.422 6.422 24 C -0.042 4.042 25 H 0.123 0.877 26 C -0.187 4.187 27 N -0.200 5.200 28 C -0.137 4.137 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.168 0.832 34 H 0.199 0.801 35 H 0.155 0.845 36 H 0.259 0.741 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.823 -12.327 -22.055 25.929 hybrid contribution -0.637 1.248 1.304 1.914 sum 5.186 -11.080 -20.751 24.088 Atomic orbital electron populations 1.21990 0.96710 1.00587 1.00740 1.20375 0.92051 0.92075 0.79014 0.97663 1.21300 1.33331 1.13972 0.89688 0.90989 1.25857 0.94723 0.95690 1.02239 1.70027 1.36642 1.23799 1.25205 0.85161 0.77984 0.79101 0.77048 1.19929 1.20218 1.18279 1.86514 1.76231 1.42964 1.21054 1.21722 0.73996 0.84981 0.85224 1.90749 1.50918 1.17909 1.85404 1.18842 1.09441 0.95482 0.90513 1.21495 0.93103 0.92198 0.99253 1.21215 1.02330 1.01770 0.90255 1.19018 0.94776 0.90929 0.93317 1.17169 1.05202 0.90422 0.87375 1.20546 0.97099 1.00574 0.90061 1.43778 1.70405 1.11153 1.05069 1.21208 0.74372 0.91354 0.82073 1.90761 1.48446 1.68964 1.34012 1.21944 1.01308 0.88650 0.92302 0.87740 1.21777 1.00601 1.02900 0.93457 1.58315 1.54584 1.07910 0.99217 1.22978 1.02584 0.81779 1.06405 0.93194 0.90082 0.95958 0.92036 0.83246 0.80091 0.84540 0.74146 0.87924 0.90616 0.92097 0.91887 0.87552 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.35 9.33 71.98 0.67 -6.68 16 2 C 0.22 11.99 2.56 29.85 0.08 12.07 16 3 H 0.01 0.34 7.16 -2.39 -0.02 0.33 16 4 C -0.55 -30.56 8.90 25.60 0.23 -30.33 16 5 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -52.71 11.32 21.45 0.24 -52.47 16 8 Si 0.98 42.26 29.54 68.60 2.03 44.29 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 12 O -0.35 -16.78 9.10 -56.73 -0.52 -17.29 16 13 C 0.49 21.45 7.86 70.23 0.55 22.00 16 14 O -0.56 -27.68 15.60 19.78 0.31 -27.37 16 15 C -0.14 -4.45 5.88 -20.08 -0.12 -4.57 16 16 C -0.04 -1.00 9.60 22.52 0.22 -0.78 16 17 C -0.13 -2.28 8.92 22.35 0.20 -2.08 16 18 C 0.12 2.26 5.91 38.59 0.23 2.48 16 19 C 0.10 2.16 6.49 38.10 0.25 2.41 16 20 C -0.06 -1.70 9.48 22.61 0.21 -1.48 16 21 N -0.66 -14.03 5.49 -302.63 -1.66 -15.69 16 22 C 0.52 11.22 7.66 87.59 0.67 11.89 16 23 O -0.55 -14.77 16.95 -3.06 -0.05 -14.82 16 24 C 0.07 0.96 2.56 44.21 0.11 1.07 16 25 H 0.11 1.19 8.13 -2.39 -0.02 1.17 16 26 C -0.13 -1.36 8.63 71.98 0.62 -0.74 16 27 N -0.49 -6.71 4.66 -700.33 -3.26 -9.97 16 28 C 0.01 0.04 8.30 127.69 1.06 1.10 16 29 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.08 4.49 6.07 -2.38 -0.01 4.47 16 31 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 33 H 0.15 3.62 7.60 -2.91 -0.02 3.60 16 34 H 0.18 1.66 5.95 -2.91 -0.02 1.65 16 35 H 0.14 3.90 7.65 -2.91 -0.02 3.87 16 36 H 0.42 8.20 8.90 -92.71 -0.83 7.37 16 37 H 0.10 0.43 6.31 -2.39 -0.02 0.42 16 38 H 0.07 0.89 7.86 -2.39 -0.02 0.87 16 39 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.06 0.28 7.98 -2.39 -0.02 0.26 16 41 H 0.11 0.22 6.01 -2.39 -0.01 0.21 16 42 H 0.10 0.41 6.78 -2.39 -0.02 0.39 16 Total: -1.00 -73.56 348.28 2.76 -70.80 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.25 Total: 14.95 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 5.43 Total: 7.58 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -4.68 Total: -78.13 kcal Atomic # 8 Polarization: -59.23 SS G_CDS: -0.26 Total: -59.49 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -73.56 2.76 -70.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750708425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.597 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds