Wall clock time and date at job start Tue Mar 31 2020 12:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47465 * 2 1 4 4 C 1.50701 * 109.47150 * 240.00379 * 2 1 3 5 5 H 1.07995 * 120.00100 * 239.99981 * 4 2 1 6 6 C 1.37874 * 119.99881 * 59.99598 * 4 2 1 7 7 N 1.31512 * 120.00278 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00046 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46907 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47130 * 120.00496 * 8 6 4 11 11 H 1.48506 * 109.46777 * 240.00393 * 8 6 4 12 12 O 1.45203 * 109.47581 * 120.00295 * 2 1 3 13 13 C 1.34756 * 117.00067 * 270.00204 * 12 2 1 14 14 O 1.21521 * 120.00160 * 359.97438 * 13 12 2 15 15 C 1.47391 * 120.00010 * 179.97438 * 13 12 2 16 16 C 1.39834 * 120.08855 * 359.97438 * 15 13 12 17 17 C 1.37659 * 120.14920 * 180.02562 * 16 15 13 18 18 C 1.39137 * 120.17441 * 359.97438 * 17 16 15 19 19 C 1.39798 * 119.86312 * 359.88242 * 18 17 16 20 20 C 1.38007 * 120.22454 * 0.17723 * 19 18 17 21 21 N 1.40358 * 119.38904 * 180.02562 * 19 18 17 22 22 C 1.35155 * 118.51280 * 18.63705 * 21 19 18 23 23 O 1.21297 * 120.31599 * 180.55443 * 22 21 19 24 24 C 1.50689 * 119.36222 * 0.28100 * 22 21 19 25 25 H 1.08997 * 109.37530 * 205.06957 * 24 22 21 26 26 C 1.52999 * 109.37506 * 85.42089 * 24 22 21 27 27 N 1.39045 * 119.97499 * 179.83590 * 18 17 16 28 28 C 1.46905 * 110.99957 * 19.49067 * 27 18 17 29 29 H 1.08998 * 109.46961 * 59.99605 * 1 2 3 30 30 H 1.08995 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46495 * 299.99657 * 1 2 3 32 32 H 0.97003 * 120.00604 * 179.97438 * 7 6 4 33 33 H 1.08008 * 119.92494 * 0.08545 * 16 15 13 34 34 H 1.07990 * 119.91128 * 179.97438 * 17 16 15 35 35 H 1.08003 * 120.11766 * 179.91006 * 20 19 18 36 36 H 0.97001 * 120.74026 * 198.43264 * 21 19 18 37 37 H 1.08997 * 109.47568 * 59.99616 * 26 24 22 38 38 H 1.08998 * 109.47399 * 180.02562 * 26 24 22 39 39 H 1.09004 * 109.47073 * 299.99983 * 26 24 22 40 40 H 1.08997 * 109.46875 * 177.52208 * 28 27 18 41 41 H 1.09000 * 109.46926 * 297.52223 * 28 27 18 42 42 H 1.09000 * 109.47022 * 57.52048 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1201 -4.0081 9 1 3.1464 -2.2867 -3.6040 10 1 1.1660 -1.5863 -4.8162 11 1 3.1465 -0.1870 -4.8165 12 8 2.0141 -0.6845 1.1855 13 6 2.2180 0.0668 2.2854 14 8 1.9978 1.2615 2.2546 15 6 2.7082 -0.5604 3.5259 16 6 2.9618 -1.9350 3.5636 17 6 3.4191 -2.5222 4.7216 18 6 3.6319 -1.7510 5.8600 19 6 3.3825 -0.3758 5.8258 20 6 2.9228 0.2182 4.6681 21 7 3.6011 0.3928 6.9797 22 6 4.3887 -0.1151 7.9536 23 8 4.5915 0.5168 8.9689 24 6 5.0075 -1.4766 7.7685 25 1 5.2150 -1.9151 8.7445 26 6 6.3163 -1.3375 6.9885 27 7 4.0907 -2.3489 7.0285 28 6 4.7141 -3.6486 6.7451 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 0.7093 1.1620 -3.4843 33 1 2.7993 -2.5373 2.6819 34 1 3.6133 -3.5842 4.7466 35 1 2.7293 1.2805 4.6440 36 1 3.1983 1.2700 7.0747 37 1 7.0032 -0.6975 7.5424 38 1 6.7651 -2.3216 6.8534 39 1 6.1130 -0.8943 6.0136 40 1 5.1032 -4.0742 7.6700 41 1 3.9711 -4.3228 6.3191 42 1 5.5306 -3.5129 6.0358 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750708427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:12 Heat of formation + Delta-G solvation = -80.277730 kcal Electronic energy + Delta-G solvation = -26447.223863 eV Core-core repulsion = 22585.564034 eV Total energy + Delta-G solvation = -3861.659829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87692 -39.69415 -38.81706 -37.29215 -35.69083 -35.37650 -33.28381 -31.99729 -30.14220 -29.90481 -29.12078 -27.44476 -25.35699 -24.64993 -23.45256 -22.79436 -21.75193 -20.36233 -19.06373 -18.60655 -18.02028 -16.83859 -16.56093 -16.34618 -15.97596 -15.64455 -15.33110 -15.02286 -14.94113 -14.56104 -14.44942 -14.39484 -13.73925 -13.35770 -13.27478 -13.01938 -12.72898 -12.50418 -12.37426 -12.25699 -12.00556 -11.88336 -11.37764 -11.26000 -11.11126 -10.90888 -10.83494 -10.49617 -10.38658 -10.31232 -10.23278 -9.79201 -9.58034 -8.93123 -8.75242 -8.52562 -7.87931 -6.21295 -4.28347 0.63173 1.03808 2.05440 2.63221 2.89321 3.19954 3.21608 3.28191 3.32492 3.54548 3.80643 3.85362 4.24568 4.30730 4.41568 4.51441 4.75787 4.87284 4.97373 5.01862 5.09856 5.12432 5.15961 5.21559 5.29702 5.34830 5.51118 5.58146 5.69123 6.02110 6.23439 6.29529 6.33262 6.39510 6.58991 6.64573 6.87244 6.88539 6.89582 7.11446 7.56258 7.61020 7.69469 7.89298 8.10223 8.57357 8.83916 9.37208 10.86226 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024495 B = 0.002841 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.803990 B = 9854.032153 C =10449.029020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.048 0.952 4 C -0.521 4.521 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.350 6.350 13 C 0.498 3.502 14 O -0.518 6.518 15 C -0.109 4.109 16 C -0.047 4.047 17 C -0.150 4.150 18 C 0.108 3.892 19 C 0.101 3.899 20 C -0.062 4.062 21 N -0.656 5.656 22 C 0.531 3.469 23 O -0.520 6.520 24 C 0.067 3.933 25 H 0.129 0.871 26 C -0.184 4.184 27 N -0.482 5.482 28 C 0.017 3.983 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.417 0.583 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.165 -8.674 18.354 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 O -0.266 6.266 13 C 0.342 3.658 14 O -0.409 6.409 15 C -0.112 4.112 16 C -0.066 4.066 17 C -0.171 4.171 18 C 0.007 3.993 19 C 0.004 3.996 20 C -0.083 4.083 21 N -0.303 5.303 22 C 0.318 3.682 23 O -0.394 6.394 24 C -0.042 4.042 25 H 0.147 0.853 26 C -0.243 4.243 27 N -0.196 5.196 28 C -0.129 4.129 29 H 0.118 0.882 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.256 0.744 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.852 -8.125 19.143 22.229 hybrid contribution 0.413 0.297 -1.301 1.397 sum 8.265 -7.828 17.842 21.164 Atomic orbital electron populations 1.22169 0.97471 1.00199 1.01475 1.20681 0.91436 0.93986 0.77537 0.93468 1.21052 1.32494 1.13512 0.88804 0.91189 1.24890 0.94921 0.95097 0.99092 1.69905 1.36066 1.22541 1.24122 0.86221 0.78629 0.79487 0.81803 1.19453 1.20710 1.20766 1.86537 1.75795 1.43159 1.21076 1.20812 0.75109 0.85239 0.84644 1.90783 1.49026 1.16262 1.84842 1.19126 1.05706 0.94061 0.92324 1.21439 0.93297 0.93654 0.98259 1.20943 1.04967 1.00355 0.90873 1.18746 1.00434 0.90484 0.89638 1.17183 1.06052 0.88907 0.87487 1.20672 0.97600 1.00730 0.89327 1.43694 1.48746 1.21014 1.16839 1.20554 0.77649 0.87741 0.82254 1.90792 1.59586 1.61819 1.27246 1.22033 0.91475 0.90132 1.00592 0.85297 1.22437 0.96403 1.04194 1.01264 1.58524 1.36794 1.05154 1.19178 1.22663 0.99224 0.88555 1.02435 0.88206 0.94346 0.96453 0.92416 0.83343 0.84010 0.83707 0.74393 0.90389 0.90075 0.91317 0.90048 0.89450 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 9.33 37.16 0.35 -3.53 16 2 C 0.22 5.68 2.56 -27.88 -0.07 5.61 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.26 8.90 -34.44 -0.31 -14.57 16 5 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 8 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 O -0.35 -8.02 9.10 -40.64 -0.37 -8.39 16 13 C 0.50 10.26 7.86 34.46 0.27 10.53 16 14 O -0.52 -12.02 15.60 -19.28 -0.30 -12.32 16 15 C -0.11 -1.70 5.88 -104.96 -0.62 -2.32 16 16 C -0.05 -0.60 9.60 -39.20 -0.38 -0.98 16 17 C -0.15 -1.51 8.95 -39.46 -0.35 -1.86 16 18 C 0.11 1.13 5.07 -83.67 -0.42 0.71 16 19 C 0.10 1.17 6.17 -83.45 -0.51 0.65 16 20 C -0.06 -0.83 9.48 -39.05 -0.37 -1.20 16 21 N -0.66 -7.10 5.49 -9.65 -0.05 -7.15 16 22 C 0.53 6.03 7.16 -10.82 -0.08 5.95 16 23 O -0.52 -7.36 17.96 5.54 0.10 -7.26 16 24 C 0.07 0.57 2.92 -69.03 -0.20 0.37 16 25 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 26 C -0.18 -1.31 8.48 37.16 0.31 -0.99 16 27 N -0.48 -4.17 4.85 -172.76 -0.84 -5.01 16 28 C 0.02 0.09 7.67 60.07 0.46 0.55 16 29 H 0.10 2.66 6.07 -51.93 -0.32 2.35 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.15 1.89 7.60 -52.48 -0.40 1.49 16 34 H 0.14 1.02 5.91 -52.49 -0.31 0.71 16 35 H 0.15 1.91 7.65 -52.48 -0.40 1.51 16 36 H 0.42 3.95 8.90 -40.82 -0.36 3.59 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.42 6.46 -51.93 -0.34 0.08 16 39 H 0.07 0.59 7.29 -51.93 -0.38 0.21 16 40 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 41 H 0.09 0.42 6.68 -51.93 -0.35 0.07 16 42 H 0.05 0.26 6.57 -51.93 -0.34 -0.08 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -32.58 347.58 -7.85 -40.43 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.22 Total: 2.61 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.01 Total: 0.51 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.26 Total: -36.42 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.57 Total: -27.97 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.58 -7.85 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750708427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.846 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds