Wall clock time and date at job start Tue Mar 31 2020 12:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47465 * 2 1 4 4 C 1.50701 * 109.47150 * 240.00379 * 2 1 3 5 5 H 1.07995 * 120.00100 * 239.99981 * 4 2 1 6 6 C 1.37874 * 119.99881 * 59.99598 * 4 2 1 7 7 N 1.31512 * 120.00278 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00046 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46907 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47130 * 120.00496 * 8 6 4 11 11 H 1.48506 * 109.46777 * 240.00393 * 8 6 4 12 12 O 1.45203 * 109.47581 * 120.00295 * 2 1 3 13 13 C 1.34756 * 117.00067 * 270.00204 * 12 2 1 14 14 O 1.21521 * 120.00160 * 359.97438 * 13 12 2 15 15 C 1.47391 * 120.00010 * 179.97438 * 13 12 2 16 16 C 1.39834 * 120.08855 * 359.97438 * 15 13 12 17 17 C 1.37659 * 120.14920 * 180.02562 * 16 15 13 18 18 C 1.39137 * 120.17441 * 359.97438 * 17 16 15 19 19 C 1.39798 * 119.86312 * 359.88242 * 18 17 16 20 20 C 1.38007 * 120.22454 * 0.17723 * 19 18 17 21 21 N 1.40358 * 119.38904 * 180.02562 * 19 18 17 22 22 C 1.35155 * 118.51280 * 18.63705 * 21 19 18 23 23 O 1.21297 * 120.31599 * 180.55443 * 22 21 19 24 24 C 1.50689 * 119.36222 * 0.28100 * 22 21 19 25 25 H 1.08997 * 109.37530 * 205.06957 * 24 22 21 26 26 C 1.52999 * 109.37506 * 85.42089 * 24 22 21 27 27 N 1.39045 * 119.97499 * 179.83590 * 18 17 16 28 28 C 1.46905 * 110.99957 * 19.49067 * 27 18 17 29 29 H 1.08998 * 109.46961 * 59.99605 * 1 2 3 30 30 H 1.08995 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46495 * 299.99657 * 1 2 3 32 32 H 0.97003 * 120.00604 * 179.97438 * 7 6 4 33 33 H 1.08008 * 119.92494 * 0.08545 * 16 15 13 34 34 H 1.07990 * 119.91128 * 179.97438 * 17 16 15 35 35 H 1.08003 * 120.11766 * 179.91006 * 20 19 18 36 36 H 0.97001 * 120.74026 * 198.43264 * 21 19 18 37 37 H 1.08997 * 109.47568 * 59.99616 * 26 24 22 38 38 H 1.08998 * 109.47399 * 180.02562 * 26 24 22 39 39 H 1.09004 * 109.47073 * 299.99983 * 26 24 22 40 40 H 1.08997 * 109.46875 * 177.52208 * 28 27 18 41 41 H 1.09000 * 109.46926 * 297.52223 * 28 27 18 42 42 H 1.09000 * 109.47022 * 57.52048 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1201 -4.0081 9 1 3.1464 -2.2867 -3.6040 10 1 1.1660 -1.5863 -4.8162 11 1 3.1465 -0.1870 -4.8165 12 8 2.0141 -0.6845 1.1855 13 6 2.2180 0.0668 2.2854 14 8 1.9978 1.2615 2.2546 15 6 2.7082 -0.5604 3.5259 16 6 2.9618 -1.9350 3.5636 17 6 3.4191 -2.5222 4.7216 18 6 3.6319 -1.7510 5.8600 19 6 3.3825 -0.3758 5.8258 20 6 2.9228 0.2182 4.6681 21 7 3.6011 0.3928 6.9797 22 6 4.3887 -0.1151 7.9536 23 8 4.5915 0.5168 8.9689 24 6 5.0075 -1.4766 7.7685 25 1 5.2150 -1.9151 8.7445 26 6 6.3163 -1.3375 6.9885 27 7 4.0907 -2.3489 7.0285 28 6 4.7141 -3.6486 6.7451 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 0.7093 1.1620 -3.4843 33 1 2.7993 -2.5373 2.6819 34 1 3.6133 -3.5842 4.7466 35 1 2.7293 1.2805 4.6440 36 1 3.1983 1.2700 7.0747 37 1 7.0032 -0.6975 7.5424 38 1 6.7651 -2.3216 6.8534 39 1 6.1130 -0.8943 6.0136 40 1 5.1032 -4.0742 7.6700 41 1 3.9711 -4.3228 6.3191 42 1 5.5306 -3.5129 6.0358 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750708427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:11 Heat of formation + Delta-G solvation = -102.262339 kcal Electronic energy + Delta-G solvation = -26448.177187 eV Core-core repulsion = 22585.564034 eV Total energy + Delta-G solvation = -3862.613153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.73130 -41.26268 -39.86709 -38.25222 -37.41656 -36.35767 -35.29708 -32.85380 -31.70003 -31.06621 -30.16322 -28.13022 -27.44471 -25.68514 -24.33260 -23.95568 -22.99205 -21.95859 -20.15648 -19.73917 -18.98081 -18.66112 -18.02508 -17.30919 -17.11079 -16.87302 -16.74516 -16.44598 -16.10570 -15.68254 -15.41195 -15.26126 -14.92447 -14.53910 -14.33425 -14.09597 -13.94201 -13.84631 -13.62234 -13.19926 -13.06148 -13.01537 -12.89428 -12.79866 -12.64834 -12.38806 -12.20058 -12.11877 -11.87214 -11.59704 -11.53099 -11.30172 -11.05983 -10.96897 -10.59375 -9.67957 -8.75297 -8.27280 -6.44106 -0.44433 0.08130 1.13168 1.44089 1.45002 1.58373 1.61079 1.72053 2.04274 2.41425 2.44423 2.70014 2.98461 3.04001 3.44491 3.73865 3.79062 3.92069 4.03647 4.09346 4.17350 4.42700 4.47905 4.52800 4.55726 4.64556 4.65459 4.71754 4.79664 4.84150 4.97057 4.99875 5.10329 5.19007 5.28828 5.39764 5.43640 5.49883 5.61149 5.63449 5.78506 5.91334 6.02936 6.06896 6.61357 6.72966 6.93791 7.27555 8.80885 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024495 B = 0.002841 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.803990 B = 9854.032153 C =10449.029020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.218 3.782 3 H 0.006 0.994 4 C -0.545 4.545 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.984 3.016 9 H -0.259 1.259 10 H -0.273 1.273 11 H -0.278 1.278 12 O -0.352 6.352 13 C 0.493 3.507 14 O -0.557 6.557 15 C -0.140 4.140 16 C -0.041 4.041 17 C -0.137 4.137 18 C 0.126 3.874 19 C 0.097 3.903 20 C -0.062 4.062 21 N -0.656 5.656 22 C 0.526 3.474 23 O -0.554 6.554 24 C 0.071 3.929 25 H 0.150 0.850 26 C -0.180 4.180 27 N -0.485 5.485 28 C 0.007 3.993 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.021 0.979 32 H 0.270 0.730 33 H 0.149 0.851 34 H 0.182 0.818 35 H 0.136 0.864 36 H 0.419 0.581 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.051 0.949 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.739 -12.063 19.392 24.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.582 4.582 5 H 0.090 0.910 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.808 3.192 9 H -0.183 1.183 10 H -0.198 1.198 11 H -0.204 1.204 12 O -0.268 6.268 13 C 0.341 3.659 14 O -0.450 6.450 15 C -0.143 4.143 16 C -0.060 4.060 17 C -0.157 4.157 18 C 0.023 3.977 19 C -0.001 4.001 20 C -0.083 4.083 21 N -0.302 5.302 22 C 0.314 3.686 23 O -0.430 6.430 24 C -0.038 4.038 25 H 0.168 0.832 26 C -0.238 4.238 27 N -0.199 5.199 28 C -0.137 4.137 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.167 0.833 34 H 0.199 0.801 35 H 0.154 0.846 36 H 0.258 0.742 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.434 -11.541 20.211 25.113 hybrid contribution -0.041 1.342 -1.415 1.950 sum 9.394 -10.199 18.796 23.357 Atomic orbital electron populations 1.21995 0.96786 1.00573 1.00728 1.20379 0.92004 0.92114 0.79039 0.97603 1.21332 1.33288 1.13936 0.89667 0.90955 1.25861 0.94731 0.95673 1.02251 1.70032 1.36741 1.23771 1.25152 0.85109 0.78308 0.78464 0.77366 1.18311 1.19781 1.20379 1.86513 1.76220 1.42980 1.21063 1.21726 0.74017 0.84969 0.85204 1.90749 1.50975 1.17909 1.85389 1.18835 1.09523 0.95519 0.90460 1.21494 0.92817 0.92213 0.99522 1.21233 1.03338 1.01994 0.89180 1.18988 0.98466 0.89833 0.90379 1.17146 1.06199 0.89741 0.86970 1.20541 0.97913 1.00331 0.89556 1.43752 1.48615 1.21215 1.16597 1.21181 0.77108 0.88751 0.81560 1.90777 1.60747 1.63026 1.28452 1.22130 0.91530 0.88320 1.01850 0.83216 1.22441 0.95633 1.05761 0.99973 1.58512 1.37330 1.06331 1.17723 1.22929 0.99903 0.86574 1.04275 0.90068 0.93229 0.95995 0.92045 0.83306 0.80099 0.84610 0.74171 0.90242 0.87268 0.92978 0.87742 0.88224 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.41 9.33 71.98 0.67 -6.73 16 2 C 0.22 11.97 2.56 29.85 0.08 12.05 16 3 H 0.01 0.38 7.16 -2.39 -0.02 0.36 16 4 C -0.54 -30.45 8.90 25.60 0.23 -30.23 16 5 H 0.07 3.90 7.81 -2.91 -0.02 3.88 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 8 Si 0.98 42.11 29.54 68.60 2.03 44.14 16 9 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 O -0.35 -16.77 9.10 -56.67 -0.52 -17.29 16 13 C 0.49 21.43 7.86 70.23 0.55 21.98 16 14 O -0.56 -27.69 15.60 19.77 0.31 -27.38 16 15 C -0.14 -4.46 5.88 -20.08 -0.12 -4.58 16 16 C -0.04 -0.99 9.60 22.52 0.22 -0.78 16 17 C -0.14 -2.29 8.95 22.35 0.20 -2.09 16 18 C 0.13 2.28 5.07 38.59 0.20 2.48 16 19 C 0.10 2.16 6.17 38.10 0.24 2.39 16 20 C -0.06 -1.71 9.48 22.61 0.21 -1.49 16 21 N -0.66 -13.87 5.49 -302.63 -1.66 -15.53 16 22 C 0.53 11.24 7.16 87.59 0.63 11.87 16 23 O -0.55 -15.30 17.96 -3.08 -0.06 -15.35 16 24 C 0.07 0.98 2.92 44.22 0.13 1.11 16 25 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 26 C -0.18 -1.96 8.48 71.98 0.61 -1.35 16 27 N -0.49 -6.48 4.85 -700.48 -3.40 -9.88 16 28 C 0.01 0.04 7.67 127.69 0.98 1.02 16 29 H 0.08 4.50 6.07 -2.39 -0.01 4.49 16 30 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.15 3.60 7.60 -2.91 -0.02 3.58 16 34 H 0.18 1.63 5.91 -2.92 -0.02 1.61 16 35 H 0.14 3.87 7.65 -2.91 -0.02 3.85 16 36 H 0.42 8.15 8.90 -92.71 -0.83 7.32 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 0.60 6.46 -2.39 -0.02 0.58 16 39 H 0.05 0.77 7.29 -2.38 -0.02 0.75 16 40 H 0.10 0.18 8.10 -2.39 -0.02 0.16 16 41 H 0.10 0.37 6.68 -2.39 -0.02 0.35 16 42 H 0.07 0.27 6.57 -2.39 -0.02 0.25 16 Total: -1.00 -74.00 347.58 2.46 -71.54 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.25 Total: 15.27 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 5.27 Total: 6.87 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -4.82 Total: -77.80 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: -0.26 Total: -60.02 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -74.00 2.46 -71.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750708427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.718 kcal (2) G-P(sol) polarization free energy of solvation -74.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds