Wall clock time and date at job start Tue Mar 31 2020 13:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21294 * 119.99470 * 2 1 4 4 N 1.34771 * 120.00493 * 179.97438 * 2 1 3 5 5 C 1.47304 * 121.15892 * 353.99649 * 4 2 1 6 6 C 1.53533 * 107.58445 * 221.98267 * 5 4 2 7 7 H 1.09000 * 109.58316 * 61.75701 * 6 5 4 8 8 C 1.50703 * 109.57879 * 182.02628 * 6 5 4 9 9 O 1.21282 * 119.99966 * 104.73264 * 8 6 5 10 10 N 1.34776 * 119.99642 * 284.72582 * 8 6 5 11 11 C 1.46501 * 120.00371 * 354.60330 * 10 8 6 12 12 C 1.46500 * 119.99616 * 174.60163 * 10 8 6 13 13 C 1.50703 * 109.47210 * 90.00445 * 12 10 8 14 14 H 1.07997 * 119.99727 * 359.97438 * 13 12 10 15 15 C 1.37877 * 119.99982 * 180.02562 * 13 12 10 16 16 N 1.31511 * 119.99808 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00048 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47126 * 270.00355 * 17 15 13 19 19 H 1.48503 * 109.47200 * 30.00056 * 17 15 13 20 20 H 1.48502 * 109.47054 * 150.00534 * 17 15 13 21 21 O 1.42951 * 108.81053 * 301.82297 * 6 5 4 22 22 C 1.35899 * 117.77517 * 49.48638 * 21 6 5 23 23 C 1.38701 * 119.66690 * 159.89620 * 22 21 6 24 24 C 1.38200 * 120.05182 * 179.61082 * 23 22 21 25 25 C 1.38275 * 120.29583 * 0.02562 * 24 23 22 26 26 C 1.38259 * 120.06158 * 0.07634 * 25 24 23 27 27 C 1.38573 * 119.87610 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.46300 * 183.05327 * 1 2 3 29 29 H 1.09004 * 109.47010 * 303.04896 * 1 2 3 30 30 H 1.08992 * 109.47106 * 63.05288 * 1 2 3 31 31 H 1.09005 * 109.83859 * 102.45884 * 5 4 2 32 32 H 1.08999 * 109.88699 * 341.53297 * 5 4 2 33 33 H 1.08993 * 109.47143 * 274.70045 * 11 10 8 34 34 H 1.09005 * 109.46945 * 34.69778 * 11 10 8 35 35 H 1.08994 * 109.46934 * 154.69306 * 11 10 8 36 36 H 1.09002 * 109.47326 * 330.00246 * 12 10 8 37 37 H 1.09004 * 109.47206 * 210.00141 * 12 10 8 38 38 H 0.97000 * 120.00190 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.97636 * 359.60972 * 23 22 21 40 40 H 1.08000 * 119.85655 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.97102 * 180.10574 * 25 24 23 42 42 H 1.08004 * 120.05909 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4765 -2.4540 0.1329 6 6 2.2937 -3.3338 1.0896 7 1 2.3463 -2.8579 2.0688 8 6 1.6372 -4.6842 1.2189 9 8 2.1143 -5.6468 0.6561 10 7 0.5201 -4.8220 1.9602 11 6 0.0105 -3.6880 2.7351 12 6 -0.1847 -6.1060 1.9909 13 6 0.3609 -6.9518 3.1126 14 1 1.1535 -6.5711 3.7396 15 6 -0.1513 -8.2120 3.3377 16 7 0.3251 -8.9502 4.3163 17 14 -1.5219 -8.8706 2.2528 18 1 -2.8364 -8.5026 2.8377 19 1 -1.4030 -8.2836 0.8939 20 1 -1.4160 -10.3492 2.1645 21 8 3.6118 -3.4908 0.5590 22 6 4.2733 -2.3710 0.1649 23 6 5.6549 -2.3964 0.0446 24 6 6.3350 -1.2646 -0.3634 25 6 5.6443 -0.1022 -0.6531 26 6 4.2673 -0.0669 -0.5340 27 6 3.5806 -1.1987 -0.1243 28 1 -0.3632 -1.0263 0.0547 29 1 -0.3633 0.5605 0.8614 30 1 -0.3633 0.4657 -0.9160 31 1 1.4022 -2.9370 -0.8414 32 1 0.4793 -2.2905 0.5416 33 1 0.5153 -3.6515 3.7004 34 1 0.1990 -2.7623 2.1913 35 1 -1.0619 -3.8064 2.8900 36 1 -0.0395 -6.6230 1.0423 37 1 -1.2488 -5.9327 2.1511 38 1 -0.0355 -9.8366 4.4749 39 1 6.1997 -3.3013 0.2699 40 1 7.4107 -1.2879 -0.4563 41 1 6.1809 0.7787 -0.9731 42 1 3.7278 0.8409 -0.7607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750800246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:32 Heat of formation + Delta-G solvation = -40.704942 kcal Electronic energy + Delta-G solvation = -27168.881940 eV Core-core repulsion = 23308.938116 eV Total energy + Delta-G solvation = -3859.943824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72096 -39.68767 -38.97740 -37.37746 -35.85449 -35.12203 -32.74684 -31.70626 -31.16219 -29.94019 -28.74932 -27.88190 -26.36401 -25.01174 -23.50984 -22.61458 -21.53243 -19.81350 -19.13723 -18.40446 -17.80383 -17.25253 -17.02608 -16.37970 -16.11989 -15.91800 -15.45532 -15.21515 -14.82884 -14.51736 -14.21389 -14.11380 -13.93383 -13.58519 -13.39207 -13.24813 -12.76619 -12.56565 -12.53468 -12.42638 -12.27944 -12.01385 -11.86210 -11.72365 -11.56345 -11.18003 -11.01764 -10.61679 -10.46864 -10.21966 -9.85090 -9.64002 -9.26044 -8.66797 -8.59711 -7.99106 -7.96607 -6.15403 -4.15525 1.07613 1.29641 2.19343 2.25195 2.64706 2.99680 3.20542 3.30472 3.31494 3.64695 3.76721 3.99955 4.18643 4.32247 4.34008 4.60941 4.63508 4.74582 4.83781 4.95230 4.99909 5.12823 5.16593 5.22078 5.27275 5.30897 5.33782 5.43964 5.59580 5.68194 5.93026 6.01361 6.14736 6.26184 6.43039 6.45268 6.68039 6.77923 6.87263 7.05934 7.27450 7.49692 7.64324 7.90553 8.35662 8.63283 8.88086 9.43026 10.97943 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.003621 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.631995 B = 7731.817389 C = 8753.326123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.518 3.482 3 O -0.522 6.522 4 N -0.555 5.555 5 C 0.071 3.929 6 C 0.063 3.937 7 H 0.099 0.901 8 C 0.517 3.483 9 O -0.501 6.501 10 N -0.591 5.591 11 C 0.076 3.924 12 C 0.219 3.781 13 C -0.533 4.533 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.894 5.894 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.264 1.264 20 H -0.283 1.283 21 O -0.280 6.280 22 C 0.101 3.899 23 C -0.126 4.126 24 C -0.104 4.104 25 C -0.135 4.135 26 C -0.112 4.112 27 C 0.072 3.928 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.031 0.969 38 H 0.266 0.734 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 19.682 -9.114 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.309 3.691 3 O -0.399 6.399 4 N -0.280 5.280 5 C -0.051 4.051 6 C 0.002 3.998 7 H 0.117 0.883 8 C 0.300 3.700 9 O -0.375 6.375 10 N -0.325 5.325 11 C -0.068 4.068 12 C 0.099 3.901 13 C -0.572 4.572 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.532 5.532 17 Si 0.701 3.299 18 H -0.200 1.200 19 H -0.188 1.188 20 H -0.208 1.208 21 O -0.192 6.192 22 C 0.054 3.946 23 C -0.145 4.145 24 C -0.123 4.123 25 C -0.154 4.154 26 C -0.132 4.132 27 C -0.021 4.021 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.138 0.862 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.969 19.336 -9.321 21.555 hybrid contribution -0.862 -0.455 -0.179 0.991 sum 1.107 18.881 -9.500 21.165 Atomic orbital electron populations 1.22052 0.90353 1.05185 1.06140 1.20994 0.90949 0.82056 0.75107 1.90585 1.69847 1.30962 1.48487 1.45854 1.04989 1.07208 1.69987 1.22805 0.97208 0.83003 1.02101 1.22666 0.82904 0.96664 0.97571 0.88325 1.19345 0.81474 0.88099 0.81106 1.90753 1.60949 1.39415 1.46361 1.47766 1.25735 1.13886 1.45108 1.21850 1.01160 0.87623 0.96124 1.19774 0.91273 0.79942 0.99097 1.21290 1.21528 1.00075 1.14283 0.90654 1.24860 0.96741 0.96356 0.94988 1.69889 1.42337 1.10723 1.30267 0.86869 0.82356 0.78951 0.81678 1.20036 1.18831 1.20827 1.86193 1.27324 1.28536 1.77160 1.18719 0.91837 0.85167 0.98910 1.20470 0.90105 1.00068 1.03841 1.20960 0.99962 0.92125 0.99207 1.21044 0.93700 0.98331 1.02300 1.21672 0.94579 0.98472 0.98453 1.18012 0.82382 0.95883 1.05865 0.89755 0.87852 0.87859 0.88284 0.86247 0.92203 0.93013 0.90194 0.93970 0.95092 0.92436 0.84475 0.85267 0.85556 0.82139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 10.07 36.01 0.36 -0.76 16 2 C 0.52 5.68 7.70 -10.99 -0.08 5.59 16 3 O -0.52 -7.20 13.98 5.55 0.08 -7.12 16 4 N -0.55 -6.70 3.01 -112.34 -0.34 -7.03 16 5 C 0.07 0.81 5.31 -3.33 -0.02 0.79 16 6 C 0.06 0.95 2.52 -27.61 -0.07 0.88 16 7 H 0.10 1.34 7.35 -51.93 -0.38 0.96 16 8 C 0.52 9.96 6.97 -10.98 -0.08 9.89 16 9 O -0.50 -12.18 16.21 -13.85 -0.22 -12.41 16 10 N -0.59 -10.93 2.86 -182.95 -0.52 -11.45 16 11 C 0.08 0.97 9.92 59.85 0.59 1.57 16 12 C 0.22 4.95 4.23 -5.19 -0.02 4.92 16 13 C -0.53 -14.77 9.94 -34.44 -0.34 -15.11 16 14 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 17 Si 0.87 20.61 27.47 -169.99 -4.67 15.94 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 O -0.28 -4.80 9.55 -38.82 -0.37 -5.17 16 22 C 0.10 1.51 6.51 -39.05 -0.25 1.26 16 23 C -0.13 -1.64 9.97 -39.42 -0.39 -2.03 16 24 C -0.10 -1.12 10.03 -39.58 -0.40 -1.51 16 25 C -0.13 -1.48 10.05 -39.56 -0.40 -1.88 16 26 C -0.11 -1.45 8.93 -39.45 -0.35 -1.81 16 27 C 0.07 1.00 6.33 -83.37 -0.53 0.47 16 28 H 0.08 0.41 5.39 -51.93 -0.28 0.13 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.12 0.96 3.73 -51.93 -0.19 0.77 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.46 4.75 -51.93 -0.25 0.22 16 35 H 0.08 0.91 7.84 -51.93 -0.41 0.50 16 36 H 0.04 1.03 6.56 -51.93 -0.34 0.69 16 37 H 0.03 0.64 7.29 -51.93 -0.38 0.26 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.16 2.15 5.18 -52.54 -0.27 1.88 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -36.33 342.92 -7.23 -43.56 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.05 Total: 0.53 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -2.08 Total: 4.25 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.09 Total: -44.74 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.52 Total: -24.70 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.33 -7.23 -43.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750800246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.859 kcal (2) G-P(sol) polarization free energy of solvation -36.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds