Wall clock time and date at job start Tue Mar 31 2020 13:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21294 * 119.99470 * 2 1 4 4 N 1.34771 * 120.00493 * 179.97438 * 2 1 3 5 5 C 1.47304 * 121.15892 * 353.99649 * 4 2 1 6 6 C 1.53533 * 107.58445 * 221.98267 * 5 4 2 7 7 H 1.09000 * 109.58316 * 61.75701 * 6 5 4 8 8 C 1.50703 * 109.57879 * 182.02628 * 6 5 4 9 9 O 1.21282 * 119.99966 * 104.73264 * 8 6 5 10 10 N 1.34776 * 119.99642 * 284.72582 * 8 6 5 11 11 C 1.46501 * 120.00371 * 354.60330 * 10 8 6 12 12 C 1.46500 * 119.99616 * 174.60163 * 10 8 6 13 13 C 1.50703 * 109.47210 * 90.00445 * 12 10 8 14 14 H 1.07997 * 119.99727 * 359.97438 * 13 12 10 15 15 C 1.37877 * 119.99982 * 180.02562 * 13 12 10 16 16 N 1.31511 * 119.99808 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00048 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47126 * 270.00355 * 17 15 13 19 19 H 1.48503 * 109.47200 * 30.00056 * 17 15 13 20 20 H 1.48502 * 109.47054 * 150.00534 * 17 15 13 21 21 O 1.42951 * 108.81053 * 301.82297 * 6 5 4 22 22 C 1.35899 * 117.77517 * 49.48638 * 21 6 5 23 23 C 1.38701 * 119.66690 * 159.89620 * 22 21 6 24 24 C 1.38200 * 120.05182 * 179.61082 * 23 22 21 25 25 C 1.38275 * 120.29583 * 0.02562 * 24 23 22 26 26 C 1.38259 * 120.06158 * 0.07634 * 25 24 23 27 27 C 1.38573 * 119.87610 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.46300 * 183.05327 * 1 2 3 29 29 H 1.09004 * 109.47010 * 303.04896 * 1 2 3 30 30 H 1.08992 * 109.47106 * 63.05288 * 1 2 3 31 31 H 1.09005 * 109.83859 * 102.45884 * 5 4 2 32 32 H 1.08999 * 109.88699 * 341.53297 * 5 4 2 33 33 H 1.08993 * 109.47143 * 274.70045 * 11 10 8 34 34 H 1.09005 * 109.46945 * 34.69778 * 11 10 8 35 35 H 1.08994 * 109.46934 * 154.69306 * 11 10 8 36 36 H 1.09002 * 109.47326 * 330.00246 * 12 10 8 37 37 H 1.09004 * 109.47206 * 210.00141 * 12 10 8 38 38 H 0.97000 * 120.00190 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.97636 * 359.60972 * 23 22 21 40 40 H 1.08000 * 119.85655 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.97102 * 180.10574 * 25 24 23 42 42 H 1.08004 * 120.05909 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4765 -2.4540 0.1329 6 6 2.2937 -3.3338 1.0896 7 1 2.3463 -2.8579 2.0688 8 6 1.6372 -4.6842 1.2189 9 8 2.1143 -5.6468 0.6561 10 7 0.5201 -4.8220 1.9602 11 6 0.0105 -3.6880 2.7351 12 6 -0.1847 -6.1060 1.9909 13 6 0.3609 -6.9518 3.1126 14 1 1.1535 -6.5711 3.7396 15 6 -0.1513 -8.2120 3.3377 16 7 0.3251 -8.9502 4.3163 17 14 -1.5219 -8.8706 2.2528 18 1 -2.8364 -8.5026 2.8377 19 1 -1.4030 -8.2836 0.8939 20 1 -1.4160 -10.3492 2.1645 21 8 3.6118 -3.4908 0.5590 22 6 4.2733 -2.3710 0.1649 23 6 5.6549 -2.3964 0.0446 24 6 6.3350 -1.2646 -0.3634 25 6 5.6443 -0.1022 -0.6531 26 6 4.2673 -0.0669 -0.5340 27 6 3.5806 -1.1987 -0.1243 28 1 -0.3632 -1.0263 0.0547 29 1 -0.3633 0.5605 0.8614 30 1 -0.3633 0.4657 -0.9160 31 1 1.4022 -2.9370 -0.8414 32 1 0.4793 -2.2905 0.5416 33 1 0.5153 -3.6515 3.7004 34 1 0.1990 -2.7623 2.1913 35 1 -1.0619 -3.8064 2.8900 36 1 -0.0395 -6.6230 1.0423 37 1 -1.2488 -5.9327 2.1511 38 1 -0.0355 -9.8366 4.4749 39 1 6.1997 -3.3013 0.2699 40 1 7.4107 -1.2879 -0.4563 41 1 6.1809 0.7787 -0.9731 42 1 3.7278 0.8409 -0.7607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750800246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:32 Heat of formation + Delta-G solvation = -65.889766 kcal Electronic energy + Delta-G solvation = -27169.974036 eV Core-core repulsion = 23308.938116 eV Total energy + Delta-G solvation = -3861.035920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.73175 -40.93998 -40.09805 -38.46373 -36.98510 -36.56960 -34.75800 -32.76270 -32.14777 -30.90681 -30.20100 -28.91083 -27.62756 -26.24527 -24.60569 -24.11280 -22.62025 -20.73164 -20.49587 -19.52475 -19.15043 -18.75786 -18.37129 -17.47853 -17.25131 -16.97629 -16.80602 -16.44865 -16.07123 -15.66449 -15.59455 -15.16058 -14.99243 -14.81124 -14.48945 -14.30526 -14.27392 -13.82915 -13.73012 -13.51700 -13.31269 -13.07166 -12.89930 -12.89063 -12.73479 -12.50325 -12.37393 -12.16552 -12.02680 -11.75829 -11.40887 -10.94752 -10.80400 -10.62397 -9.59415 -9.54999 -8.97304 -8.32348 -6.38799 0.14474 0.30600 1.18428 1.35191 1.37565 1.41304 1.47059 1.51238 1.67639 2.33556 2.47639 2.74405 3.01818 3.09290 3.21881 3.31181 3.58901 3.72737 3.74195 4.09352 4.19037 4.25947 4.27127 4.37663 4.40411 4.50959 4.57922 4.61716 4.71411 4.74878 4.91693 4.94772 4.97478 5.11832 5.22070 5.36906 5.43550 5.50043 5.51718 5.75209 6.03050 6.18663 6.24245 6.45614 6.63666 6.80964 7.09760 7.27053 8.85044 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.003621 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.631995 B = 7731.817389 C = 8753.326123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.554 6.554 4 N -0.557 5.557 5 C 0.081 3.919 6 C 0.069 3.931 7 H 0.112 0.888 8 C 0.512 3.488 9 O -0.566 6.566 10 N -0.592 5.592 11 C 0.066 3.934 12 C 0.225 3.775 13 C -0.542 4.542 14 H 0.023 0.977 15 C 0.008 3.992 16 N -0.949 5.949 17 Si 0.952 3.048 18 H -0.247 1.247 19 H -0.248 1.248 20 H -0.288 1.288 21 O -0.314 6.314 22 C 0.071 3.929 23 C -0.139 4.139 24 C -0.097 4.097 25 C -0.127 4.127 26 C -0.125 4.125 27 C 0.059 3.941 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.025 0.975 37 H 0.068 0.932 38 H 0.268 0.732 39 H 0.137 0.863 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 22.179 -10.462 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.307 3.693 3 O -0.433 6.433 4 N -0.282 5.282 5 C -0.041 4.041 6 C 0.009 3.991 7 H 0.130 0.870 8 C 0.298 3.702 9 O -0.444 6.444 10 N -0.324 5.324 11 C -0.075 4.075 12 C 0.103 3.897 13 C -0.580 4.580 14 H 0.042 0.958 15 C -0.190 4.190 16 N -0.589 5.589 17 Si 0.774 3.226 18 H -0.171 1.171 19 H -0.172 1.172 20 H -0.214 1.214 21 O -0.228 6.228 22 C 0.024 3.976 23 C -0.158 4.158 24 C -0.115 4.115 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.034 4.034 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.115 0.885 32 H 0.176 0.824 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.155 0.845 40 H 0.180 0.820 41 H 0.174 0.826 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.172 21.907 -10.649 24.359 hybrid contribution -0.031 -1.152 0.302 1.192 sum -0.203 20.755 -10.347 23.192 Atomic orbital electron populations 1.22159 0.86211 1.06917 1.07709 1.21935 0.92722 0.80995 0.73695 1.90569 1.70935 1.31897 1.49893 1.46012 1.04371 1.07785 1.70067 1.22821 0.97883 0.82118 1.01261 1.22557 0.82874 0.94340 0.99363 0.87010 1.20088 0.81084 0.89137 0.79919 1.90710 1.62766 1.41894 1.49011 1.47804 1.25390 1.14050 1.45167 1.22230 1.02321 0.87266 0.95705 1.19511 0.93097 0.81187 0.95890 1.21582 1.20195 1.01230 1.15000 0.95843 1.25936 0.99980 0.96579 0.96514 1.70069 1.44661 1.11384 1.32738 0.85661 0.79334 0.77623 0.80020 1.17061 1.17191 1.21376 1.86129 1.28393 1.30313 1.77925 1.18994 0.92570 0.85176 1.00858 1.20755 0.89825 1.01096 1.04109 1.21310 1.01507 0.91023 0.97684 1.21441 0.93156 0.99359 1.00612 1.21807 0.95577 0.98038 0.99069 1.18206 0.83668 0.95686 1.05866 0.87849 0.86103 0.86309 0.88506 0.82414 0.92981 0.88528 0.87833 0.95682 0.91438 0.92314 0.84515 0.81984 0.82568 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.07 71.24 0.72 -0.72 16 2 C 0.51 10.00 7.70 87.66 0.68 10.68 16 3 O -0.55 -14.42 13.98 -3.07 -0.04 -14.46 16 4 N -0.56 -12.51 3.01 -627.72 -1.89 -14.40 16 5 C 0.08 1.68 5.31 86.40 0.46 2.14 16 6 C 0.07 2.07 2.52 30.03 0.08 2.14 16 7 H 0.11 2.96 7.35 -2.39 -0.02 2.94 16 8 C 0.51 20.04 6.97 87.66 0.61 20.65 16 9 O -0.57 -28.82 16.21 15.52 0.25 -28.57 16 10 N -0.59 -21.43 2.86 -851.12 -2.43 -23.86 16 11 C 0.07 1.51 9.92 127.77 1.27 2.78 16 12 C 0.22 10.00 4.23 85.63 0.36 10.36 16 13 C -0.54 -30.90 9.94 25.60 0.25 -30.64 16 14 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 15 C 0.01 0.44 5.47 84.66 0.46 0.90 16 16 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 17 Si 0.95 42.27 27.47 68.60 1.88 44.15 16 18 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 19 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 O -0.31 -11.19 9.55 -73.85 -0.71 -11.90 16 22 C 0.07 2.15 6.51 22.62 0.15 2.30 16 23 C -0.14 -3.63 9.97 22.37 0.22 -3.41 16 24 C -0.10 -1.92 10.03 22.27 0.22 -1.70 16 25 C -0.13 -2.55 10.05 22.28 0.22 -2.32 16 26 C -0.13 -3.12 8.93 22.35 0.20 -2.92 16 27 C 0.06 1.63 6.33 38.06 0.24 1.87 16 28 H 0.10 0.45 5.39 -2.38 -0.01 0.44 16 29 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.16 1.86 3.73 -2.39 -0.01 1.85 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 1.31 4.75 -2.38 -0.01 1.30 16 35 H 0.10 1.92 7.84 -2.39 -0.02 1.90 16 36 H 0.03 1.21 6.56 -2.39 -0.02 1.20 16 37 H 0.07 2.54 7.29 -2.38 -0.02 2.53 16 38 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 40 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 42 H 0.16 4.07 5.18 -3.77 -0.02 4.05 16 Total: -1.00 -86.80 342.92 4.51 -82.29 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.00 Total: 13.77 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.14 Total: 12.09 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -4.02 Total: -97.38 kcal Atomic # 8 Polarization: -54.43 SS G_CDS: -0.50 Total: -54.93 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.15 kcal Total: -86.80 4.51 -82.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750800246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.405 kcal (2) G-P(sol) polarization free energy of solvation -86.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds