Wall clock time and date at job start Tue Mar 31 2020 13:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21298 * 120.00448 * 2 1 4 4 N 1.34780 * 120.00192 * 180.02562 * 2 1 3 5 5 C 1.47299 * 121.15470 * 355.91096 * 4 2 1 6 6 C 1.53540 * 107.58058 * 138.07407 * 5 4 2 7 7 H 1.08996 * 109.69618 * 298.31871 * 6 5 4 8 8 C 1.50703 * 109.57747 * 177.98304 * 6 5 4 9 9 O 1.21280 * 119.99662 * 245.67938 * 8 6 5 10 10 N 1.34768 * 120.00254 * 65.68723 * 8 6 5 11 11 C 1.46506 * 119.99948 * 359.97438 * 10 8 6 12 12 C 1.46499 * 120.00400 * 180.02562 * 10 8 6 13 13 C 1.50702 * 109.46770 * 269.99796 * 12 10 8 14 14 H 1.07997 * 119.99980 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99820 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00082 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99743 * 179.72148 * 15 13 12 18 18 H 1.48495 * 109.47273 * 270.26773 * 17 15 13 19 19 H 1.48499 * 109.47188 * 30.27498 * 17 15 13 20 20 H 1.48505 * 109.46975 * 150.27172 * 17 15 13 21 21 O 1.42959 * 108.80515 * 58.18927 * 6 5 4 22 22 C 1.35900 * 117.76639 * 310.49992 * 21 6 5 23 23 C 1.38712 * 119.66119 * 200.29410 * 22 21 6 24 24 C 1.38200 * 120.04872 * 180.15861 * 23 22 21 25 25 C 1.38287 * 120.29711 * 0.03176 * 24 23 22 26 26 C 1.38260 * 120.05841 * 359.89133 * 25 24 23 27 27 C 1.38572 * 119.87991 * 0.03579 * 26 25 24 28 28 H 1.08997 * 109.47032 * 274.11197 * 1 2 3 29 29 H 1.08998 * 109.47040 * 34.10678 * 1 2 3 30 30 H 1.09001 * 109.47076 * 154.10866 * 1 2 3 31 31 H 1.09003 * 109.84244 * 18.55739 * 5 4 2 32 32 H 1.08992 * 109.83249 * 257.59286 * 5 4 2 33 33 H 1.09005 * 109.47128 * 270.00344 * 11 10 8 34 34 H 1.08996 * 109.47065 * 30.00259 * 11 10 8 35 35 H 1.08996 * 109.46965 * 150.00267 * 11 10 8 36 36 H 1.08999 * 109.47622 * 149.99572 * 12 10 8 37 37 H 1.09006 * 109.47130 * 29.99143 * 12 10 8 38 38 H 0.96998 * 120.00265 * 359.72812 * 16 15 13 39 39 H 1.07996 * 119.97525 * 0.17470 * 23 22 21 40 40 H 1.08001 * 119.85344 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.97182 * 179.91000 * 25 24 23 42 42 H 1.08003 * 120.05828 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4731 -2.4559 0.0888 6 6 2.1425 -3.4221 -0.8990 7 1 2.0457 -3.0357 -1.9136 8 6 1.4828 -4.7741 -0.8085 9 8 2.1096 -5.7284 -0.3996 10 7 0.1965 -4.9227 -1.1822 11 6 -0.5607 -3.7697 -1.6758 12 6 -0.4449 -6.2368 -1.0937 13 6 -0.2459 -6.9810 -2.3889 14 1 0.3030 -6.5210 -3.1972 15 6 -0.7647 -8.2493 -2.5419 16 7 -1.4327 -8.8097 -1.5575 17 14 -0.5247 -9.1687 -4.1502 18 1 -1.6496 -8.8606 -5.0692 19 1 0.7548 -8.7474 -4.7751 20 1 -0.4884 -10.6294 -3.8847 21 8 3.5266 -3.5407 -0.5613 22 6 4.2324 -2.3950 -0.3718 23 6 5.6163 -2.4183 -0.4632 24 6 6.3423 -1.2585 -0.2687 25 6 5.6955 -0.0705 0.0184 26 6 4.3163 -0.0374 0.1100 27 6 3.5835 -1.1971 -0.0857 28 1 -0.3633 0.0737 1.0250 29 1 -0.3633 0.8509 -0.5762 30 1 -0.3633 -0.9245 -0.4488 31 1 0.4248 -2.3215 -0.1782 32 1 1.5499 -2.8506 1.1018 33 1 -1.0515 -3.2722 -0.8392 34 1 0.1182 -3.0720 -2.1659 35 1 -1.3123 -4.1072 -2.3894 36 1 -1.5114 -6.1089 -0.9083 37 1 0.0005 -6.8042 -0.2765 38 1 -1.5571 -8.3324 -0.7223 39 1 6.1268 -3.3433 -0.6869 40 1 7.4197 -1.2802 -0.3411 41 1 6.2681 0.8324 0.1709 42 1 3.8112 0.8904 0.3346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750800250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:36 Heat of formation + Delta-G solvation = -48.067260 kcal Electronic energy + Delta-G solvation = -27223.314176 eV Core-core repulsion = 23363.051097 eV Total energy + Delta-G solvation = -3860.263078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73910 -39.70173 -38.99182 -37.37599 -35.89782 -35.14515 -33.11084 -31.67948 -31.11943 -29.89825 -28.39383 -27.38691 -26.30630 -24.83538 -23.52458 -22.90905 -21.66760 -19.89057 -19.31820 -18.40260 -17.84401 -17.31028 -16.97615 -16.36737 -16.11910 -15.91869 -15.55781 -15.17976 -14.65745 -14.56897 -14.26404 -13.97607 -13.79114 -13.59894 -13.48155 -13.22064 -12.77643 -12.67744 -12.59966 -12.40783 -12.14466 -12.05416 -11.84188 -11.59113 -11.47525 -11.15004 -11.05331 -10.66299 -10.46767 -10.16950 -9.75205 -9.31345 -9.23777 -8.61868 -8.48233 -8.00612 -7.89209 -6.48908 -4.22247 1.07322 1.29093 2.20910 2.24711 2.68047 2.93702 3.37065 3.43577 3.58313 3.63657 3.76377 4.00020 4.16612 4.35842 4.46320 4.59045 4.64437 4.71618 4.82163 4.94343 5.00454 5.14476 5.15170 5.26488 5.27029 5.31355 5.33163 5.42958 5.47329 5.66273 5.87260 6.00701 6.15498 6.26130 6.43129 6.54596 6.71522 6.86725 6.93188 7.09545 7.27280 7.64969 7.88335 7.93552 8.29756 8.59930 8.71987 9.47301 10.88866 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.003584 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.376743 B = 7810.463853 C = 8848.820521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.518 3.482 3 O -0.522 6.522 4 N -0.553 5.553 5 C 0.067 3.933 6 C 0.063 3.937 7 H 0.100 0.900 8 C 0.516 3.484 9 O -0.505 6.505 10 N -0.591 5.591 11 C 0.072 3.928 12 C 0.237 3.763 13 C -0.612 4.612 14 H 0.053 0.947 15 C 0.022 3.978 16 N -0.907 5.907 17 Si 1.074 2.926 18 H -0.287 1.287 19 H -0.288 1.288 20 H -0.282 1.282 21 O -0.280 6.280 22 C 0.100 3.900 23 C -0.127 4.127 24 C -0.104 4.104 25 C -0.136 4.136 26 C -0.119 4.119 27 C 0.070 3.930 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.028 0.972 37 H 0.037 0.963 38 H 0.268 0.732 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.392 19.511 2.853 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.310 3.690 3 O -0.399 6.399 4 N -0.279 5.279 5 C -0.055 4.055 6 C 0.002 3.998 7 H 0.118 0.882 8 C 0.298 3.702 9 O -0.379 6.379 10 N -0.324 5.324 11 C -0.071 4.071 12 C 0.118 3.882 13 C -0.650 4.650 14 H 0.071 0.929 15 C -0.183 4.183 16 N -0.542 5.542 17 Si 0.902 3.098 18 H -0.214 1.214 19 H -0.214 1.214 20 H -0.208 1.208 21 O -0.192 6.192 22 C 0.053 3.947 23 C -0.146 4.146 24 C -0.123 4.123 25 C -0.155 4.155 26 C -0.138 4.138 27 C -0.023 4.023 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.139 0.861 32 H 0.116 0.884 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.653 17.922 2.321 18.936 hybrid contribution 0.132 1.500 0.626 1.631 sum 5.785 19.423 2.948 20.479 Atomic orbital electron populations 1.22041 0.90323 1.05526 1.05735 1.20999 0.90965 0.81996 0.75075 1.90506 1.69471 1.31105 1.48858 1.45823 1.04679 1.07186 1.70170 1.22917 0.98506 0.82294 1.01799 1.22655 0.81577 0.96305 0.99279 0.88244 1.19367 0.82625 0.88052 0.80116 1.90747 1.62161 1.40171 1.44773 1.47891 1.10099 1.11710 1.62745 1.21890 0.97321 0.88761 0.99174 1.19448 0.91938 0.77946 0.98848 1.22255 1.39401 1.03399 0.99984 0.92859 1.25823 0.93411 0.94964 1.04058 1.70788 1.38273 1.40325 1.04860 0.83465 0.76060 0.76285 0.74008 1.21361 1.21442 1.20765 1.86194 1.20720 1.27477 1.84855 1.18743 0.91859 0.84200 0.99937 1.20461 0.90079 0.99856 1.04184 1.20972 0.99862 0.91846 0.99616 1.21082 0.93981 0.98134 1.02254 1.22018 0.93974 0.98796 0.99025 1.18064 0.82358 0.95136 1.06751 0.87940 0.87880 0.89593 0.86128 0.88391 0.93174 0.92402 0.89668 0.95465 0.94510 0.92170 0.84532 0.85307 0.85562 0.81244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 9.77 36.00 0.35 -0.82 16 2 C 0.52 5.81 7.76 -10.99 -0.09 5.72 16 3 O -0.52 -7.23 13.81 5.54 0.08 -7.16 16 4 N -0.55 -6.84 3.01 -112.34 -0.34 -7.18 16 5 C 0.07 0.79 5.50 -3.33 -0.02 0.78 16 6 C 0.06 0.97 2.54 -27.60 -0.07 0.90 16 7 H 0.10 1.39 7.12 -51.93 -0.37 1.02 16 8 C 0.52 10.25 7.10 -10.99 -0.08 10.18 16 9 O -0.50 -12.65 16.09 -14.24 -0.23 -12.88 16 10 N -0.59 -11.30 2.86 -182.95 -0.52 -11.83 16 11 C 0.07 0.94 8.94 59.85 0.54 1.47 16 12 C 0.24 5.74 4.47 -5.19 -0.02 5.71 16 13 C -0.61 -16.76 9.39 -34.44 -0.32 -17.08 16 14 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 15 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 16 N -0.91 -26.71 13.65 55.43 0.76 -25.96 16 17 Si 1.07 24.93 29.90 -169.99 -5.08 19.84 16 18 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 O -0.28 -4.88 9.51 -39.22 -0.37 -5.25 16 22 C 0.10 1.52 6.51 -39.04 -0.25 1.26 16 23 C -0.13 -1.66 9.97 -39.42 -0.39 -2.06 16 24 C -0.10 -1.14 10.03 -39.58 -0.40 -1.53 16 25 C -0.14 -1.52 10.05 -39.56 -0.40 -1.91 16 26 C -0.12 -1.57 9.03 -39.45 -0.36 -1.92 16 27 C 0.07 1.00 6.34 -83.37 -0.53 0.47 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.44 5.83 -51.93 -0.30 0.14 16 31 H 0.12 1.05 2.68 -51.93 -0.14 0.91 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.48 7.08 -51.93 -0.37 0.11 16 34 H 0.06 0.61 6.08 -51.93 -0.32 0.29 16 35 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 36 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 37 H 0.04 1.00 7.28 -51.93 -0.38 0.62 16 38 H 0.27 7.78 7.22 -40.82 -0.29 7.48 16 39 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.17 2.33 4.91 -53.55 -0.26 2.06 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -35.82 343.66 -7.67 -43.49 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.01 Total: 0.05 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.13 Total: 1.69 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.10 Total: -44.97 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.53 Total: -25.29 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.82 -7.67 -43.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750800250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.577 kcal (2) G-P(sol) polarization free energy of solvation -35.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds