Wall clock time and date at job start Tue Mar 31 2020 13:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21298 * 120.00448 * 2 1 4 4 N 1.34780 * 120.00192 * 180.02562 * 2 1 3 5 5 C 1.47299 * 121.15470 * 355.91096 * 4 2 1 6 6 C 1.53540 * 107.58058 * 138.07407 * 5 4 2 7 7 H 1.08996 * 109.69618 * 298.31871 * 6 5 4 8 8 C 1.50703 * 109.57747 * 177.98304 * 6 5 4 9 9 O 1.21280 * 119.99662 * 245.67938 * 8 6 5 10 10 N 1.34768 * 120.00254 * 65.68723 * 8 6 5 11 11 C 1.46506 * 119.99948 * 359.97438 * 10 8 6 12 12 C 1.46499 * 120.00400 * 180.02562 * 10 8 6 13 13 C 1.50702 * 109.46770 * 269.99796 * 12 10 8 14 14 H 1.07997 * 119.99980 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99820 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00082 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99743 * 179.72148 * 15 13 12 18 18 H 1.48495 * 109.47273 * 270.26773 * 17 15 13 19 19 H 1.48499 * 109.47188 * 30.27498 * 17 15 13 20 20 H 1.48505 * 109.46975 * 150.27172 * 17 15 13 21 21 O 1.42959 * 108.80515 * 58.18927 * 6 5 4 22 22 C 1.35900 * 117.76639 * 310.49992 * 21 6 5 23 23 C 1.38712 * 119.66119 * 200.29410 * 22 21 6 24 24 C 1.38200 * 120.04872 * 180.15861 * 23 22 21 25 25 C 1.38287 * 120.29711 * 0.03176 * 24 23 22 26 26 C 1.38260 * 120.05841 * 359.89133 * 25 24 23 27 27 C 1.38572 * 119.87991 * 0.03579 * 26 25 24 28 28 H 1.08997 * 109.47032 * 274.11197 * 1 2 3 29 29 H 1.08998 * 109.47040 * 34.10678 * 1 2 3 30 30 H 1.09001 * 109.47076 * 154.10866 * 1 2 3 31 31 H 1.09003 * 109.84244 * 18.55739 * 5 4 2 32 32 H 1.08992 * 109.83249 * 257.59286 * 5 4 2 33 33 H 1.09005 * 109.47128 * 270.00344 * 11 10 8 34 34 H 1.08996 * 109.47065 * 30.00259 * 11 10 8 35 35 H 1.08996 * 109.46965 * 150.00267 * 11 10 8 36 36 H 1.08999 * 109.47622 * 149.99572 * 12 10 8 37 37 H 1.09006 * 109.47130 * 29.99143 * 12 10 8 38 38 H 0.96998 * 120.00265 * 359.72812 * 16 15 13 39 39 H 1.07996 * 119.97525 * 0.17470 * 23 22 21 40 40 H 1.08001 * 119.85344 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.97182 * 179.91000 * 25 24 23 42 42 H 1.08003 * 120.05828 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4731 -2.4559 0.0888 6 6 2.1425 -3.4221 -0.8990 7 1 2.0457 -3.0357 -1.9136 8 6 1.4828 -4.7741 -0.8085 9 8 2.1096 -5.7284 -0.3996 10 7 0.1965 -4.9227 -1.1822 11 6 -0.5607 -3.7697 -1.6758 12 6 -0.4449 -6.2368 -1.0937 13 6 -0.2459 -6.9810 -2.3889 14 1 0.3030 -6.5210 -3.1972 15 6 -0.7647 -8.2493 -2.5419 16 7 -1.4327 -8.8097 -1.5575 17 14 -0.5247 -9.1687 -4.1502 18 1 -1.6496 -8.8606 -5.0692 19 1 0.7548 -8.7474 -4.7751 20 1 -0.4884 -10.6294 -3.8847 21 8 3.5266 -3.5407 -0.5613 22 6 4.2324 -2.3950 -0.3718 23 6 5.6163 -2.4183 -0.4632 24 6 6.3423 -1.2585 -0.2687 25 6 5.6955 -0.0705 0.0184 26 6 4.3163 -0.0374 0.1100 27 6 3.5835 -1.1971 -0.0857 28 1 -0.3633 0.0737 1.0250 29 1 -0.3633 0.8509 -0.5762 30 1 -0.3633 -0.9245 -0.4488 31 1 0.4248 -2.3215 -0.1782 32 1 1.5499 -2.8506 1.1018 33 1 -1.0515 -3.2722 -0.8392 34 1 0.1182 -3.0720 -2.1659 35 1 -1.3123 -4.1072 -2.3894 36 1 -1.5114 -6.1089 -0.9083 37 1 0.0005 -6.8042 -0.2765 38 1 -1.5571 -8.3324 -0.7223 39 1 6.1268 -3.3433 -0.6869 40 1 7.4197 -1.2802 -0.3411 41 1 6.2681 0.8324 0.1709 42 1 3.8112 0.8904 0.3346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750800250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:35 Heat of formation + Delta-G solvation = -71.808801 kcal Electronic energy + Delta-G solvation = -27224.343686 eV Core-core repulsion = 23363.051097 eV Total energy + Delta-G solvation = -3861.292589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.77443 -40.99233 -40.13766 -38.48376 -37.11958 -36.61575 -35.06741 -32.69018 -32.14089 -30.81417 -29.59609 -28.71484 -27.66704 -26.18595 -24.90146 -24.28398 -22.72407 -20.90280 -20.65506 -19.54279 -19.15076 -18.77417 -18.36007 -17.45808 -17.29274 -17.04832 -16.91383 -16.19914 -16.01835 -15.74900 -15.59115 -15.20220 -14.97253 -14.83940 -14.53526 -14.41656 -14.13883 -13.91145 -13.66127 -13.48561 -13.30358 -13.14915 -12.97271 -12.94995 -12.74541 -12.54794 -12.47086 -12.22120 -11.99832 -11.44827 -11.22561 -10.95588 -10.61088 -10.56814 -9.62421 -9.60005 -9.00314 -8.69900 -6.45844 0.12954 0.29311 1.21176 1.37733 1.42628 1.50052 1.54102 1.59705 1.77117 2.42281 2.53480 2.72149 3.03748 3.09445 3.17250 3.29171 3.52331 3.69000 3.73022 4.07152 4.14918 4.21133 4.25805 4.29676 4.38004 4.47662 4.52360 4.57896 4.66870 4.72712 4.85178 4.91173 4.94903 5.10196 5.22519 5.35509 5.39771 5.50564 5.74278 5.79287 6.00257 6.11020 6.20453 6.42179 6.46125 6.79328 7.06817 7.32791 8.66633 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.003584 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.376743 B = 7810.463853 C = 8848.820521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.552 6.552 4 N -0.555 5.555 5 C 0.079 3.921 6 C 0.072 3.928 7 H 0.117 0.883 8 C 0.510 3.490 9 O -0.572 6.572 10 N -0.590 5.590 11 C 0.059 3.941 12 C 0.247 3.753 13 C -0.621 4.621 14 H 0.045 0.955 15 C -0.027 4.027 16 N -0.930 5.930 17 Si 1.117 2.883 18 H -0.261 1.261 19 H -0.282 1.282 20 H -0.284 1.284 21 O -0.313 6.313 22 C 0.069 3.931 23 C -0.138 4.138 24 C -0.097 4.097 25 C -0.128 4.128 26 C -0.132 4.132 27 C 0.057 3.943 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.156 0.844 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.036 0.964 37 H -0.003 1.003 38 H 0.258 0.742 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 22.074 1.942 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.307 3.693 3 O -0.431 6.431 4 N -0.280 5.280 5 C -0.043 4.043 6 C 0.012 3.988 7 H 0.135 0.865 8 C 0.296 3.704 9 O -0.451 6.451 10 N -0.322 5.322 11 C -0.082 4.082 12 C 0.125 3.875 13 C -0.660 4.660 14 H 0.063 0.937 15 C -0.226 4.226 16 N -0.567 5.567 17 Si 0.939 3.061 18 H -0.186 1.186 19 H -0.208 1.208 20 H -0.209 1.209 21 O -0.227 6.227 22 C 0.023 3.977 23 C -0.157 4.157 24 C -0.115 4.115 25 C -0.146 4.146 26 C -0.152 4.152 27 C -0.037 4.037 28 H 0.140 0.860 29 H 0.134 0.866 30 H 0.124 0.876 31 H 0.174 0.826 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.068 0.932 39 H 0.156 0.844 40 H 0.181 0.819 41 H 0.174 0.826 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.211 20.561 1.402 21.257 hybrid contribution 0.341 0.796 0.949 1.284 sum 5.551 21.357 2.351 22.191 Atomic orbital electron populations 1.22158 0.86291 1.07144 1.07447 1.21921 0.92717 0.80966 0.73721 1.90491 1.70517 1.31952 1.50157 1.45964 1.04097 1.07660 1.70324 1.22883 0.99662 0.81330 1.00455 1.22508 0.81253 0.93802 1.01269 0.86539 1.20139 0.82428 0.89230 0.78626 1.90705 1.63794 1.42799 1.47769 1.47855 1.10386 1.11673 1.62331 1.22347 0.97588 0.87159 1.01134 1.19000 0.92207 0.80157 0.96094 1.22567 1.38690 1.03911 1.00819 0.93695 1.27230 0.92759 0.96234 1.06419 1.70896 1.40013 1.40656 1.05153 0.82915 0.77101 0.74997 0.71083 1.18580 1.20770 1.20922 1.86132 1.21671 1.29272 1.85629 1.19021 0.92527 0.84019 1.02139 1.20754 0.89755 1.00972 1.04251 1.21328 1.01406 0.90730 0.98046 1.21479 0.93459 0.99352 1.00332 1.22144 0.94996 0.98292 0.99758 1.18265 0.83604 0.94991 1.06792 0.85985 0.86582 0.87616 0.82636 0.88990 0.88584 0.89335 0.90130 0.94575 0.98533 0.93215 0.84426 0.81942 0.82579 0.81700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 9.77 71.23 0.70 -0.86 16 2 C 0.51 10.27 7.76 87.66 0.68 10.95 16 3 O -0.55 -14.43 13.81 -3.09 -0.04 -14.48 16 4 N -0.56 -12.80 3.01 -627.73 -1.89 -14.69 16 5 C 0.08 1.72 5.50 86.41 0.48 2.19 16 6 C 0.07 2.20 2.54 30.03 0.08 2.27 16 7 H 0.12 3.08 7.12 -2.39 -0.02 3.06 16 8 C 0.51 20.68 7.10 87.66 0.62 21.30 16 9 O -0.57 -30.29 16.09 15.90 0.26 -30.03 16 10 N -0.59 -22.39 2.86 -851.12 -2.43 -24.82 16 11 C 0.06 1.35 8.94 127.77 1.14 2.49 16 12 C 0.25 12.23 4.47 85.63 0.38 12.61 16 13 C -0.62 -34.62 9.39 25.60 0.24 -34.38 16 14 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 15 C -0.03 -1.56 5.46 84.66 0.46 -1.09 16 16 N -0.93 -55.89 13.65 21.45 0.29 -55.60 16 17 Si 1.12 50.08 29.90 68.60 2.05 52.13 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 O -0.31 -11.23 9.51 -73.50 -0.70 -11.93 16 22 C 0.07 2.12 6.51 22.62 0.15 2.27 16 23 C -0.14 -3.60 9.97 22.37 0.22 -3.37 16 24 C -0.10 -1.91 10.03 22.27 0.22 -1.69 16 25 C -0.13 -2.57 10.05 22.29 0.22 -2.35 16 26 C -0.13 -3.34 9.03 22.35 0.20 -3.14 16 27 C 0.06 1.58 6.34 38.06 0.24 1.83 16 28 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.11 0.51 5.83 -2.39 -0.01 0.50 16 31 H 0.16 2.10 2.68 -2.39 -0.01 2.10 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.10 1.36 7.08 -2.38 -0.02 1.34 16 34 H 0.09 1.51 6.08 -2.39 -0.01 1.49 16 35 H 0.08 1.99 8.07 -2.39 -0.02 1.97 16 36 H 0.04 1.72 7.94 -2.39 -0.02 1.71 16 37 H 0.00 -0.19 7.28 -2.38 -0.02 -0.21 16 38 H 0.26 15.52 7.22 -92.71 -0.67 14.85 16 39 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.17 4.37 4.91 -19.77 -0.10 4.27 16 Total: -1.00 -83.70 343.66 4.65 -79.05 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.08 Total: 11.36 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.04 Total: 9.02 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -4.03 Total: -95.12 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: -0.49 Total: -56.44 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Total: -83.70 4.65 -79.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750800250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.237 kcal (2) G-P(sol) polarization free energy of solvation -83.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds