Wall clock time and date at job start Tue Mar 31 2020 12:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 O 1.21291 * 119.99663 * 2 1 4 4 N 1.34770 * 119.99797 * 179.97438 * 2 1 3 5 5 C 1.47302 * 121.16311 * 354.17160 * 4 2 1 6 6 C 1.53540 * 107.58409 * 221.98290 * 5 4 2 7 7 H 1.09008 * 109.57752 * 61.62461 * 6 5 4 8 8 C 1.50697 * 109.58001 * 181.88881 * 6 5 4 9 9 O 1.21287 * 119.99915 * 114.73228 * 8 6 5 10 10 N 1.34771 * 120.00128 * 294.73708 * 8 6 5 11 11 C 1.46506 * 120.00069 * 180.02562 * 10 8 6 12 12 H 1.08998 * 109.46760 * 324.99335 * 11 10 8 13 13 C 1.52992 * 109.47404 * 84.99673 * 11 10 8 14 14 C 1.50703 * 109.46919 * 204.99923 * 11 10 8 15 15 H 1.07994 * 120.00101 * 359.97438 * 14 11 10 16 16 C 1.37874 * 119.99697 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00317 * 179.97438 * 16 14 11 18 18 Si 1.86801 * 120.00280 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.46971 * 90.00111 * 18 16 14 20 20 H 1.48496 * 109.47745 * 210.00007 * 18 16 14 21 21 H 1.48502 * 109.47192 * 330.00621 * 18 16 14 22 22 O 1.42945 * 108.92572 * 301.75976 * 6 5 4 23 23 C 1.36162 * 117.59373 * 49.42881 * 22 6 5 24 24 C 1.38709 * 119.59458 * 159.95829 * 23 22 6 25 25 C 1.38200 * 120.05463 * 179.64017 * 24 23 22 26 26 C 1.38280 * 120.29388 * 359.97438 * 25 24 23 27 27 C 1.38256 * 120.05961 * 0.08779 * 26 25 24 28 28 C 1.38571 * 119.87955 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.46918 * 264.82483 * 1 2 3 30 30 H 1.09001 * 109.47000 * 24.82879 * 1 2 3 31 31 H 1.08995 * 109.46459 * 144.82316 * 1 2 3 32 32 H 1.09001 * 109.83806 * 102.46792 * 5 4 2 33 33 H 1.08993 * 109.88790 * 341.53418 * 5 4 2 34 34 H 0.96999 * 120.00592 * 359.97438 * 10 8 6 35 35 H 1.09009 * 109.47123 * 300.00266 * 13 11 10 36 36 H 1.08998 * 109.47438 * 60.00077 * 13 11 10 37 37 H 1.09000 * 109.47380 * 180.02562 * 13 11 10 38 38 H 0.96993 * 120.00263 * 179.97438 * 17 16 14 39 39 H 1.08000 * 119.97156 * 359.63571 * 24 23 22 40 40 H 1.07997 * 119.85287 * 179.97438 * 25 24 23 41 41 H 1.07994 * 119.96455 * 180.10328 * 26 25 24 42 42 H 1.08007 * 120.05682 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4760 -2.4542 0.1291 6 6 2.2907 -3.3356 1.0866 7 1 2.3426 -2.8599 2.0661 8 6 1.6320 -4.6849 1.2148 9 8 2.1988 -5.6774 0.8088 10 7 0.4132 -4.7888 1.7805 11 6 -0.2269 -6.1007 1.9056 12 1 0.0297 -6.7139 1.0418 13 6 0.2625 -6.7873 3.1821 14 6 -1.7223 -5.9257 1.9710 15 1 -2.1528 -4.9364 1.9244 16 6 -2.5408 -7.0288 2.0902 17 7 -3.8459 -6.8762 2.1477 18 14 -1.7963 -8.7401 2.1699 19 1 -1.5262 -9.0969 3.5859 20 1 -2.7456 -9.7208 1.5849 21 1 -0.5251 -8.7632 1.4026 22 8 3.6104 -3.4947 0.5608 23 6 4.2727 -2.3714 0.1687 24 6 5.6547 -2.3966 0.0522 25 6 6.3359 -1.2642 -0.3522 26 6 5.6459 -0.1017 -0.6430 27 6 4.2686 -0.0668 -0.5284 28 6 3.5807 -1.1991 -0.1221 29 1 -0.3633 -0.0927 1.0234 30 1 -0.3633 0.9327 -0.4315 31 1 -0.3632 -0.8400 -0.5920 32 1 1.4044 -2.9357 -0.8462 33 1 0.4778 -2.2913 0.5353 34 1 -0.0400 -3.9952 2.1055 35 1 1.3442 -6.9139 3.1348 36 1 0.0059 -6.1741 4.0459 37 1 -0.2134 -7.7636 3.2750 38 1 -4.4217 -7.6522 2.2312 39 1 6.1988 -3.3019 0.2776 40 1 7.4119 -1.2873 -0.4415 41 1 6.1835 0.7796 -0.9601 42 1 3.7296 0.8411 -0.7559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751392222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:53 Heat of formation + Delta-G solvation = -55.473681 kcal Electronic energy + Delta-G solvation = -26916.971382 eV Core-core repulsion = 23056.387137 eV Total energy + Delta-G solvation = -3860.584245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67654 -39.66897 -38.96249 -37.44030 -35.77867 -35.14818 -32.69393 -31.71264 -31.26816 -30.12137 -29.50850 -27.99460 -25.42295 -25.10452 -23.49108 -22.20887 -21.17479 -19.97213 -19.73556 -18.45960 -17.94591 -17.67506 -16.67650 -16.30058 -16.07058 -15.86108 -15.57831 -15.24319 -14.85961 -14.48631 -14.19220 -14.03070 -13.87856 -13.55073 -13.36051 -13.23483 -12.97298 -12.74531 -12.44409 -12.31072 -12.12838 -12.01434 -11.95967 -11.59154 -11.42988 -11.18761 -10.92175 -10.47141 -10.29940 -9.90597 -9.76209 -9.37693 -9.35460 -8.88716 -8.63216 -8.40490 -8.01657 -6.31980 -4.36005 1.05864 1.25926 2.22944 2.27741 2.66953 2.84348 3.16443 3.29300 3.32581 3.63916 3.80376 4.05953 4.18028 4.22206 4.55215 4.65220 4.77208 4.83803 4.93185 4.97079 5.03017 5.08062 5.12569 5.24008 5.29719 5.33500 5.53789 5.66211 5.99028 6.11525 6.18447 6.24460 6.24734 6.40839 6.42521 6.64603 6.72054 6.88660 6.97976 7.08012 7.21763 7.34622 7.67841 7.93060 8.30200 8.55402 8.67387 9.27828 10.79740 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.003517 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.136994 B = 7958.622508 C = 9184.053917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.519 3.481 3 O -0.523 6.523 4 N -0.557 5.557 5 C 0.075 3.925 6 C 0.061 3.939 7 H 0.101 0.899 8 C 0.514 3.486 9 O -0.521 6.521 10 N -0.693 5.693 11 C 0.239 3.761 12 H 0.052 0.948 13 C -0.164 4.164 14 C -0.539 4.539 15 H 0.082 0.918 16 C 0.081 3.919 17 N -0.889 5.889 18 Si 0.884 3.116 19 H -0.275 1.275 20 H -0.293 1.293 21 H -0.261 1.261 22 O -0.281 6.281 23 C 0.097 3.903 24 C -0.125 4.125 25 C -0.106 4.106 26 C -0.133 4.133 27 C -0.113 4.113 28 C 0.076 3.924 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.396 0.604 35 H 0.037 0.963 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.269 0.731 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.665 13.289 -3.516 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.310 3.690 3 O -0.399 6.399 4 N -0.282 5.282 5 C -0.048 4.048 6 C 0.000 4.000 7 H 0.119 0.881 8 C 0.296 3.704 9 O -0.397 6.397 10 N -0.344 5.344 11 C 0.136 3.864 12 H 0.070 0.930 13 C -0.222 4.222 14 C -0.577 4.577 15 H 0.100 0.900 16 C -0.124 4.124 17 N -0.526 5.526 18 Si 0.713 3.287 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.186 1.186 22 O -0.193 6.193 23 C 0.050 3.950 24 C -0.144 4.144 25 C -0.125 4.125 26 C -0.152 4.152 27 C -0.133 4.133 28 C -0.017 4.017 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.137 0.863 34 H 0.229 0.771 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 13.141 12.836 -3.793 18.758 hybrid contribution -0.194 -0.572 0.400 0.725 sum 12.947 12.264 -3.393 18.154 Atomic orbital electron populations 1.22023 0.89996 1.05998 1.05615 1.21066 0.91063 0.81942 0.74888 1.90575 1.69997 1.31002 1.48347 1.45860 1.04849 1.07333 1.70198 1.22691 0.97108 0.82824 1.02133 1.22641 0.83031 0.96442 0.97884 0.88141 1.19536 0.82598 0.88569 0.79739 1.90732 1.63178 1.37623 1.48127 1.46126 1.16366 1.12508 1.59360 1.19191 0.92912 0.79704 0.94572 0.93034 1.22473 0.98956 1.00373 1.00390 1.20965 0.87548 0.95901 1.53236 0.90049 1.24808 0.94657 0.99108 0.93782 1.69849 1.02992 1.31074 1.48651 0.86898 0.79201 0.84026 0.78539 1.20213 1.22033 1.18595 1.86256 1.27116 1.28416 1.77535 1.18744 0.91786 0.85183 0.99311 1.20440 0.90090 0.99964 1.03949 1.20952 0.99932 0.92164 0.99437 1.21054 0.93717 0.98327 1.02089 1.21700 0.94561 0.98580 0.98440 1.18019 0.82526 0.95778 1.05418 0.87932 0.88092 0.89130 0.88221 0.86332 0.77062 0.94408 0.92634 0.93207 0.92129 0.84608 0.85310 0.85544 0.82064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.06 36.01 0.33 -0.99 16 2 C 0.52 5.95 7.70 -10.98 -0.08 5.86 16 3 O -0.52 -7.41 13.98 5.55 0.08 -7.34 16 4 N -0.56 -6.73 3.01 -112.34 -0.34 -7.06 16 5 C 0.08 0.84 5.40 -3.32 -0.02 0.83 16 6 C 0.06 0.84 3.36 -27.60 -0.09 0.75 16 7 H 0.10 1.20 8.14 -51.92 -0.42 0.77 16 8 C 0.51 8.92 7.15 -10.99 -0.08 8.84 16 9 O -0.52 -11.37 16.18 -14.25 -0.23 -11.60 16 10 N -0.69 -12.02 5.04 -54.93 -0.28 -12.30 16 11 C 0.24 5.23 2.15 -69.08 -0.15 5.08 16 12 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 13 C -0.16 -3.43 8.96 37.15 0.33 -3.10 16 14 C -0.54 -13.41 9.31 -34.44 -0.32 -13.73 16 15 H 0.08 2.09 7.98 -52.49 -0.42 1.67 16 16 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 17 N -0.89 -25.00 13.96 55.43 0.77 -24.23 16 18 Si 0.88 20.72 24.37 -169.99 -4.14 16.58 16 19 H -0.28 -6.28 6.87 56.52 0.39 -5.89 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.26 -6.09 6.53 56.52 0.37 -5.72 16 22 O -0.28 -4.43 9.53 -40.06 -0.38 -4.81 16 23 C 0.10 1.37 6.52 -39.05 -0.25 1.12 16 24 C -0.13 -1.52 9.97 -39.42 -0.39 -1.92 16 25 C -0.11 -1.08 10.03 -39.58 -0.40 -1.48 16 26 C -0.13 -1.42 10.05 -39.56 -0.40 -1.82 16 27 C -0.11 -1.45 8.93 -39.45 -0.35 -1.80 16 28 C 0.08 1.04 6.33 -83.37 -0.53 0.51 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.57 7.08 -51.93 -0.37 0.21 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.12 0.99 6.36 -51.93 -0.33 0.66 16 34 H 0.40 5.62 8.44 -40.82 -0.34 5.28 16 35 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 1.09 3.28 -51.93 -0.17 0.92 16 38 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.16 2.17 5.18 -52.54 -0.27 1.90 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -32.93 343.24 -7.08 -40.02 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.23 Total: 5.39 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.50 Total: 0.18 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.16 Total: -43.60 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.53 Total: -23.75 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.14 Total: 16.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.93 -7.08 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751392222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.457 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds