Wall clock time and date at job start Tue Mar 31 2020 12:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 O 1.21291 * 119.99663 * 2 1 4 4 N 1.34770 * 119.99797 * 179.97438 * 2 1 3 5 5 C 1.47302 * 121.16311 * 354.17160 * 4 2 1 6 6 C 1.53540 * 107.58409 * 221.98290 * 5 4 2 7 7 H 1.09008 * 109.57752 * 61.62461 * 6 5 4 8 8 C 1.50697 * 109.58001 * 181.88881 * 6 5 4 9 9 O 1.21287 * 119.99915 * 114.73228 * 8 6 5 10 10 N 1.34771 * 120.00128 * 294.73708 * 8 6 5 11 11 C 1.46506 * 120.00069 * 180.02562 * 10 8 6 12 12 H 1.08998 * 109.46760 * 324.99335 * 11 10 8 13 13 C 1.52992 * 109.47404 * 84.99673 * 11 10 8 14 14 C 1.50703 * 109.46919 * 204.99923 * 11 10 8 15 15 H 1.07994 * 120.00101 * 359.97438 * 14 11 10 16 16 C 1.37874 * 119.99697 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00317 * 179.97438 * 16 14 11 18 18 Si 1.86801 * 120.00280 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.46971 * 90.00111 * 18 16 14 20 20 H 1.48496 * 109.47745 * 210.00007 * 18 16 14 21 21 H 1.48502 * 109.47192 * 330.00621 * 18 16 14 22 22 O 1.42945 * 108.92572 * 301.75976 * 6 5 4 23 23 C 1.36162 * 117.59373 * 49.42881 * 22 6 5 24 24 C 1.38709 * 119.59458 * 159.95829 * 23 22 6 25 25 C 1.38200 * 120.05463 * 179.64017 * 24 23 22 26 26 C 1.38280 * 120.29388 * 359.97438 * 25 24 23 27 27 C 1.38256 * 120.05961 * 0.08779 * 26 25 24 28 28 C 1.38571 * 119.87955 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.46918 * 264.82483 * 1 2 3 30 30 H 1.09001 * 109.47000 * 24.82879 * 1 2 3 31 31 H 1.08995 * 109.46459 * 144.82316 * 1 2 3 32 32 H 1.09001 * 109.83806 * 102.46792 * 5 4 2 33 33 H 1.08993 * 109.88790 * 341.53418 * 5 4 2 34 34 H 0.96999 * 120.00592 * 359.97438 * 10 8 6 35 35 H 1.09009 * 109.47123 * 300.00266 * 13 11 10 36 36 H 1.08998 * 109.47438 * 60.00077 * 13 11 10 37 37 H 1.09000 * 109.47380 * 180.02562 * 13 11 10 38 38 H 0.96993 * 120.00263 * 179.97438 * 17 16 14 39 39 H 1.08000 * 119.97156 * 359.63571 * 24 23 22 40 40 H 1.07997 * 119.85287 * 179.97438 * 25 24 23 41 41 H 1.07994 * 119.96455 * 180.10328 * 26 25 24 42 42 H 1.08007 * 120.05682 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4760 -2.4542 0.1291 6 6 2.2907 -3.3356 1.0866 7 1 2.3426 -2.8599 2.0661 8 6 1.6320 -4.6849 1.2148 9 8 2.1988 -5.6774 0.8088 10 7 0.4132 -4.7888 1.7805 11 6 -0.2269 -6.1007 1.9056 12 1 0.0297 -6.7139 1.0418 13 6 0.2625 -6.7873 3.1821 14 6 -1.7223 -5.9257 1.9710 15 1 -2.1528 -4.9364 1.9244 16 6 -2.5408 -7.0288 2.0902 17 7 -3.8459 -6.8762 2.1477 18 14 -1.7963 -8.7401 2.1699 19 1 -1.5262 -9.0969 3.5859 20 1 -2.7456 -9.7208 1.5849 21 1 -0.5251 -8.7632 1.4026 22 8 3.6104 -3.4947 0.5608 23 6 4.2727 -2.3714 0.1687 24 6 5.6547 -2.3966 0.0522 25 6 6.3359 -1.2642 -0.3522 26 6 5.6459 -0.1017 -0.6430 27 6 4.2686 -0.0668 -0.5284 28 6 3.5807 -1.1991 -0.1221 29 1 -0.3633 -0.0927 1.0234 30 1 -0.3633 0.9327 -0.4315 31 1 -0.3632 -0.8400 -0.5920 32 1 1.4044 -2.9357 -0.8462 33 1 0.4778 -2.2913 0.5353 34 1 -0.0400 -3.9952 2.1055 35 1 1.3442 -6.9139 3.1348 36 1 0.0059 -6.1741 4.0459 37 1 -0.2134 -7.7636 3.2750 38 1 -4.4217 -7.6522 2.2312 39 1 6.1988 -3.3019 0.2776 40 1 7.4119 -1.2873 -0.4415 41 1 6.1835 0.7796 -0.9601 42 1 3.7296 0.8411 -0.7559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751392222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:52 Heat of formation + Delta-G solvation = -77.881551 kcal Electronic energy + Delta-G solvation = -26917.943060 eV Core-core repulsion = 23056.387137 eV Total energy + Delta-G solvation = -3861.555923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.65515 -40.90929 -40.07275 -38.47398 -36.92394 -36.66480 -34.48536 -32.94623 -32.20273 -31.32331 -30.57579 -28.90803 -27.21843 -26.26654 -24.41663 -23.49431 -22.42354 -21.44169 -20.66901 -19.54316 -19.35814 -18.58150 -18.19471 -17.44359 -17.23194 -17.12148 -16.87395 -16.41494 -15.98118 -15.69293 -15.47724 -15.07301 -14.98315 -14.78910 -14.76635 -14.42083 -14.15930 -14.11197 -13.69866 -13.44903 -13.21178 -13.16004 -13.01124 -12.85013 -12.77508 -12.48415 -12.20668 -12.12568 -11.63164 -11.40121 -11.26922 -10.98769 -10.85430 -10.64089 -10.02159 -9.56662 -8.96179 -8.35758 -6.41110 0.15755 0.32325 1.25447 1.30011 1.38789 1.39616 1.46479 1.51755 1.57843 2.28084 2.57616 2.76344 3.01135 3.14350 3.26219 3.56058 3.64733 3.76839 3.90929 4.10953 4.24620 4.29061 4.35465 4.42266 4.46220 4.50258 4.55013 4.58605 4.70092 4.76781 4.96144 4.99837 5.13091 5.23455 5.30116 5.38626 5.39718 5.53307 5.54457 5.75067 6.02405 6.11252 6.23577 6.59207 6.71610 6.80565 7.15100 7.31022 8.78585 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.003517 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.136994 B = 7958.622508 C = 9184.053917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.514 3.486 3 O -0.555 6.555 4 N -0.557 5.557 5 C 0.080 3.920 6 C 0.069 3.931 7 H 0.123 0.877 8 C 0.520 3.480 9 O -0.568 6.568 10 N -0.684 5.684 11 C 0.243 3.757 12 H 0.027 0.973 13 C -0.160 4.160 14 C -0.528 4.528 15 H 0.069 0.931 16 C 0.034 3.966 17 N -0.930 5.930 18 Si 0.930 3.070 19 H -0.263 1.263 20 H -0.296 1.296 21 H -0.263 1.263 22 O -0.307 6.307 23 C 0.072 3.928 24 C -0.134 4.134 25 C -0.098 4.098 26 C -0.128 4.128 27 C -0.129 4.129 28 C 0.060 3.940 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.413 0.587 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.270 0.730 39 H 0.143 0.857 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.794 14.336 -3.223 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.308 3.692 3 O -0.433 6.433 4 N -0.283 5.283 5 C -0.042 4.042 6 C 0.008 3.992 7 H 0.140 0.860 8 C 0.304 3.696 9 O -0.447 6.447 10 N -0.335 5.335 11 C 0.139 3.861 12 H 0.045 0.955 13 C -0.218 4.218 14 C -0.566 4.566 15 H 0.088 0.912 16 C -0.166 4.166 17 N -0.568 5.568 18 Si 0.758 3.242 19 H -0.189 1.189 20 H -0.223 1.223 21 H -0.187 1.187 22 O -0.220 6.220 23 C 0.025 3.975 24 C -0.153 4.153 25 C -0.116 4.116 26 C -0.146 4.146 27 C -0.149 4.149 28 C -0.034 4.034 29 H 0.140 0.860 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.168 0.832 34 H 0.250 0.750 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.161 0.839 40 H 0.181 0.819 41 H 0.172 0.828 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 14.268 13.918 -3.487 20.235 hybrid contribution -0.455 -0.799 0.261 0.956 sum 13.813 13.119 -3.226 19.321 Atomic orbital electron populations 1.22111 0.86726 1.07104 1.07196 1.21820 0.92504 0.81150 0.73739 1.90561 1.70970 1.31968 1.49824 1.45959 1.04475 1.07718 1.70112 1.22727 0.97901 0.82164 1.01454 1.22532 0.82803 0.94179 0.99693 0.85981 1.20014 0.81947 0.89485 0.78165 1.90711 1.64308 1.39695 1.49965 1.45822 1.16548 1.11718 1.59406 1.18841 0.91430 0.81577 0.94238 0.95524 1.22393 0.99249 1.00016 1.00153 1.21194 0.89057 0.95198 1.51180 0.91244 1.25436 0.94891 1.02181 0.94090 1.69944 1.04151 1.31929 1.50820 0.86151 0.78251 0.80740 0.79089 1.18859 1.22315 1.18744 1.86196 1.27904 1.29761 1.78181 1.18997 0.92536 0.85013 1.00939 1.20758 0.89650 1.01068 1.03779 1.21322 1.01537 0.91032 0.97742 1.21423 0.93042 0.99506 1.00642 1.21788 0.95666 0.98116 0.99337 1.18231 0.83474 0.95889 1.05824 0.85957 0.87293 0.87717 0.88795 0.83204 0.74974 0.93725 0.91163 0.94085 0.92105 0.83902 0.81899 0.82837 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.06 71.24 0.65 -1.50 16 2 C 0.51 11.10 7.70 87.66 0.68 11.78 16 3 O -0.55 -15.42 13.98 -3.06 -0.04 -15.46 16 4 N -0.56 -12.82 3.01 -627.72 -1.89 -14.71 16 5 C 0.08 1.67 5.40 86.41 0.47 2.14 16 6 C 0.07 1.80 3.36 30.03 0.10 1.91 16 7 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 8 C 0.52 17.58 7.15 87.66 0.63 18.21 16 9 O -0.57 -24.83 16.18 15.88 0.26 -24.57 16 10 N -0.68 -22.73 5.04 -446.10 -2.25 -24.97 16 11 C 0.24 10.44 2.15 44.24 0.10 10.53 16 12 H 0.03 1.30 6.63 -2.39 -0.02 1.29 16 13 C -0.16 -6.45 8.96 71.98 0.65 -5.80 16 14 C -0.53 -25.96 9.31 25.60 0.24 -25.72 16 15 H 0.07 3.52 7.98 -2.91 -0.02 3.50 16 16 C 0.03 1.81 5.45 84.65 0.46 2.27 16 17 N -0.93 -52.44 13.96 21.45 0.30 -52.14 16 18 Si 0.93 42.36 24.37 68.60 1.67 44.03 16 19 H -0.26 -11.35 6.87 99.48 0.68 -10.67 16 20 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.26 -11.93 6.53 99.48 0.65 -11.28 16 22 O -0.31 -9.60 9.53 -76.47 -0.73 -10.33 16 23 C 0.07 1.99 6.52 22.62 0.15 2.14 16 24 C -0.13 -3.09 9.97 22.37 0.22 -2.87 16 25 C -0.10 -1.76 10.03 22.27 0.22 -1.54 16 26 C -0.13 -2.46 10.05 22.28 0.22 -2.24 16 27 C -0.13 -3.21 8.93 22.35 0.20 -3.01 16 28 C 0.06 1.58 6.33 38.05 0.24 1.83 16 29 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.02 7.08 -2.39 -0.02 1.00 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.15 2.08 6.36 -2.39 -0.02 2.06 16 34 H 0.41 10.81 8.44 -92.71 -0.78 10.03 16 35 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.04 1.72 3.28 -2.39 -0.01 1.71 16 38 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 39 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 40 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.15 4.08 5.18 -3.81 -0.02 4.06 16 Total: -1.00 -72.22 343.24 2.73 -69.48 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.20 Total: 20.55 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 5.21 Total: 8.12 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -3.84 Total: -91.83 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.51 Total: -50.36 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.67 Total: 44.03 kcal Total: -72.22 2.73 -69.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751392222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.398 kcal (2) G-P(sol) polarization free energy of solvation -72.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds