Wall clock time and date at job start Tue Mar 31 2020 12:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21300 * 120.00095 * 2 1 4 4 N 1.34779 * 119.99785 * 180.02562 * 2 1 3 5 5 C 1.47299 * 121.15977 * 355.91127 * 4 2 1 6 6 C 1.53535 * 107.57911 * 138.11038 * 5 4 2 7 7 H 1.09001 * 109.58370 * 298.42765 * 6 5 4 8 8 C 1.50696 * 109.58268 * 178.15160 * 6 5 4 9 9 O 1.21279 * 120.00074 * 245.00067 * 8 6 5 10 10 N 1.34783 * 120.00297 * 65.00196 * 8 6 5 11 11 C 1.46494 * 120.00108 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.47141 * 324.99725 * 11 10 8 13 13 C 1.53001 * 109.47295 * 85.00145 * 11 10 8 14 14 C 1.50704 * 109.46854 * 205.00102 * 11 10 8 15 15 H 1.07996 * 120.00244 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99589 * 180.02562 * 14 11 10 17 17 N 1.31509 * 120.00395 * 359.97438 * 16 14 11 18 18 Si 1.86808 * 119.99610 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46802 * 60.00145 * 18 16 14 20 20 H 1.48498 * 109.47125 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47100 * 299.99673 * 18 16 14 22 22 O 1.42957 * 108.79495 * 58.21862 * 6 5 4 23 23 C 1.35900 * 117.76800 * 310.50005 * 22 6 5 24 24 C 1.38705 * 119.66600 * 200.16112 * 23 22 6 25 25 C 1.38199 * 120.05289 * 180.20570 * 24 23 22 26 26 C 1.38274 * 120.29710 * 359.97438 * 25 24 23 27 27 C 1.38262 * 120.05988 * 359.70305 * 26 25 24 28 28 C 1.38583 * 119.87659 * 0.49749 * 27 26 25 29 29 H 1.09003 * 109.46646 * 274.08306 * 1 2 3 30 30 H 1.08999 * 109.47451 * 34.07505 * 1 2 3 31 31 H 1.08990 * 109.47563 * 154.08208 * 1 2 3 32 32 H 1.08995 * 109.83653 * 257.63531 * 5 4 2 33 33 H 1.09005 * 109.83396 * 18.59572 * 5 4 2 34 34 H 0.97002 * 119.99222 * 0.02562 * 10 8 6 35 35 H 1.09002 * 109.47369 * 59.99720 * 13 11 10 36 36 H 1.08996 * 109.47129 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.46913 * 299.99823 * 13 11 10 38 38 H 0.96999 * 120.00074 * 180.02562 * 17 16 14 39 39 H 1.08007 * 119.96901 * 0.18350 * 24 23 22 40 40 H 1.07999 * 119.84662 * 179.97438 * 25 24 23 41 41 H 1.07995 * 119.97000 * 179.97438 * 26 25 24 42 42 H 1.07996 * 120.06029 * 180.26050 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4731 -2.4559 0.0888 6 6 2.1431 -3.4224 -0.8984 7 1 2.0475 -3.0335 -1.9122 8 6 1.4809 -4.7732 -0.8109 9 8 2.1086 -5.7317 -0.4131 10 7 0.1910 -4.9163 -1.1748 11 6 -0.4528 -6.2294 -1.0893 12 1 0.2730 -7.0063 -1.3294 13 6 -0.9819 -6.4466 0.3298 14 6 -1.5977 -6.2921 -2.0673 15 1 -1.8234 -5.4390 -2.6900 16 6 -2.3577 -7.4382 -2.1664 17 7 -2.0832 -8.4769 -1.4079 18 14 -3.7773 -7.5157 -3.3782 19 1 -3.2641 -7.3052 -4.7557 20 1 -4.4299 -8.8468 -3.2916 21 1 -4.7657 -6.4571 -3.0509 22 8 3.5268 -3.5412 -0.5592 23 6 4.2327 -2.3956 -0.3691 24 6 5.6168 -2.4195 -0.4563 25 6 6.3428 -1.2601 -0.2602 26 6 5.6957 -0.0714 0.0232 27 6 4.3160 -0.0364 0.1056 28 6 3.5834 -1.1971 -0.0861 29 1 -0.3633 0.0732 1.0251 30 1 -0.3634 0.8512 -0.5758 31 1 -0.3634 -0.9242 -0.4491 32 1 1.5492 -2.8503 1.1020 33 1 0.4250 -2.3216 -0.1789 34 1 -0.3108 -4.1498 -1.4934 35 1 -1.7078 -5.6696 0.5699 36 1 -1.4605 -7.4237 0.3935 37 1 -0.1538 -6.4012 1.0371 38 1 -2.6177 -9.2833 -1.4778 39 1 6.1275 -3.3452 -0.6775 40 1 7.4204 -1.2826 -0.3285 41 1 6.2683 0.8314 0.1760 42 1 3.8104 0.8928 0.3228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751392223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:57 Heat of formation + Delta-G solvation = -58.523030 kcal Electronic energy + Delta-G solvation = -26865.862852 eV Core-core repulsion = 23005.146377 eV Total energy + Delta-G solvation = -3860.716475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.66267 -39.59380 -38.86165 -37.35975 -35.76894 -34.93528 -32.69233 -31.65356 -31.14937 -29.91676 -28.94479 -27.88637 -25.38678 -25.10800 -23.45084 -22.11415 -21.13224 -19.90007 -19.60457 -18.42346 -17.82766 -17.74611 -16.59788 -16.27327 -15.94734 -15.64457 -15.39835 -15.19594 -14.76789 -14.40125 -14.22593 -13.97019 -13.83312 -13.50389 -13.39574 -13.13350 -12.71881 -12.54966 -12.41912 -12.09832 -11.92086 -11.78900 -11.57647 -11.23284 -11.19179 -11.04077 -10.86122 -10.47248 -10.41322 -10.34100 -9.70652 -9.25236 -9.19274 -8.67722 -8.59958 -8.15708 -7.98131 -6.22734 -4.33342 1.09677 1.30864 2.25331 2.29104 2.76023 2.98887 3.18747 3.25197 3.25605 3.68128 3.89158 4.06010 4.21793 4.26693 4.54346 4.68074 4.72399 4.88999 4.96531 5.06948 5.08686 5.10667 5.17570 5.28610 5.32222 5.38449 5.52689 5.70372 6.02775 6.17350 6.28596 6.45139 6.67251 6.72788 6.80176 6.90401 6.99285 7.20803 7.26290 7.40003 7.55277 7.69508 7.76520 8.01573 8.39730 8.61281 8.84262 9.34306 10.83122 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.003308 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.686709 B = 8461.183431 C = 9410.588991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.519 3.481 3 O -0.524 6.524 4 N -0.554 5.554 5 C 0.073 3.927 6 C 0.060 3.940 7 H 0.100 0.900 8 C 0.512 3.488 9 O -0.520 6.520 10 N -0.701 5.701 11 C 0.267 3.733 12 H 0.051 0.949 13 C -0.148 4.148 14 C -0.538 4.538 15 H 0.062 0.938 16 C 0.068 3.932 17 N -0.882 5.882 18 Si 0.903 3.097 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 O -0.280 6.280 23 C 0.100 3.900 24 C -0.127 4.127 25 C -0.105 4.105 26 C -0.136 4.136 27 C -0.120 4.120 28 C 0.071 3.929 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.389 0.611 35 H 0.028 0.972 36 H 0.092 0.908 37 H 0.016 0.984 38 H 0.267 0.733 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.525 16.389 2.731 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.310 3.690 3 O -0.401 6.401 4 N -0.279 5.279 5 C -0.050 4.050 6 C -0.001 4.001 7 H 0.118 0.882 8 C 0.293 3.707 9 O -0.395 6.395 10 N -0.351 5.351 11 C 0.166 3.834 12 H 0.069 0.931 13 C -0.207 4.207 14 C -0.577 4.577 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.519 5.519 18 Si 0.730 3.270 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 O -0.193 6.193 23 C 0.052 3.948 24 C -0.146 4.146 25 C -0.124 4.124 26 C -0.155 4.155 27 C -0.139 4.139 28 C -0.022 4.022 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.221 0.779 35 H 0.047 0.953 36 H 0.111 0.889 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.173 15.826 3.082 18.077 hybrid contribution -1.198 0.257 -0.838 1.485 sum 6.975 16.083 2.244 17.673 Atomic orbital electron populations 1.22037 0.90180 1.05661 1.05745 1.21028 0.91008 0.81979 0.74967 1.90497 1.69493 1.31155 1.48921 1.45824 1.04646 1.07265 1.70163 1.22786 0.98167 0.82130 1.01920 1.22722 0.81585 0.96488 0.99354 0.88250 1.19494 0.83232 0.88031 0.79947 1.90734 1.63506 1.39835 1.45439 1.46491 1.09669 1.14658 1.64246 1.18839 0.92344 0.78387 0.93857 0.93067 1.22100 0.98450 1.03545 0.96610 1.21130 1.14397 1.00527 1.21628 0.91991 1.24879 0.97547 0.95258 0.95878 1.69878 1.39731 1.03886 1.38359 0.86485 0.81819 0.77397 0.81274 1.20121 1.21075 1.20102 1.86185 1.20822 1.27428 1.84824 1.18728 0.91826 0.84214 0.99982 1.20446 0.90086 0.99802 1.04303 1.20961 0.99833 0.91887 0.99714 1.21077 0.93990 0.98119 1.02271 1.22046 0.93978 0.98876 0.99014 1.18069 0.82407 0.95093 1.06641 0.87948 0.87991 0.89322 0.88256 0.86325 0.77883 0.95279 0.88912 0.96532 0.92343 0.84584 0.85365 0.85610 0.81214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 9.77 36.01 0.35 -0.90 16 2 C 0.52 5.92 7.76 -10.98 -0.09 5.83 16 3 O -0.52 -7.37 13.80 5.54 0.08 -7.30 16 4 N -0.55 -6.80 3.01 -112.34 -0.34 -7.14 16 5 C 0.07 0.83 5.76 -3.33 -0.02 0.81 16 6 C 0.06 0.87 3.37 -27.61 -0.09 0.77 16 7 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 8 C 0.51 9.47 7.16 -10.98 -0.08 9.39 16 9 O -0.52 -12.14 16.18 -14.18 -0.23 -12.37 16 10 N -0.70 -12.85 5.03 -54.93 -0.28 -13.12 16 11 C 0.27 6.27 2.56 -69.08 -0.18 6.09 16 12 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 13 C -0.15 -3.41 9.26 37.16 0.34 -3.06 16 14 C -0.54 -13.28 8.73 -34.44 -0.30 -13.58 16 15 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.88 -23.75 11.32 55.43 0.63 -23.12 16 18 Si 0.90 19.63 29.54 -169.99 -5.02 14.61 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 O -0.28 -4.65 9.52 -39.17 -0.37 -5.02 16 23 C 0.10 1.47 6.51 -39.05 -0.25 1.22 16 24 C -0.13 -1.62 9.97 -39.42 -0.39 -2.02 16 25 C -0.11 -1.12 10.03 -39.58 -0.40 -1.52 16 26 C -0.14 -1.51 10.05 -39.56 -0.40 -1.90 16 27 C -0.12 -1.58 9.03 -39.45 -0.36 -1.93 16 28 C 0.07 1.00 6.34 -83.37 -0.53 0.47 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.50 5.83 -51.93 -0.30 0.20 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.12 0.97 5.40 -51.93 -0.28 0.69 16 34 H 0.39 5.72 8.42 -40.82 -0.34 5.38 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.17 2.35 4.90 -53.64 -0.26 2.08 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -32.31 348.59 -8.00 -40.31 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.24 Total: 6.58 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.48 Total: 1.32 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.01 Total: -43.38 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.53 Total: -24.69 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.31 -8.00 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751392223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.210 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds