Wall clock time and date at job start Tue Mar 31 2020 12:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21300 * 120.00095 * 2 1 4 4 N 1.34779 * 119.99785 * 180.02562 * 2 1 3 5 5 C 1.47299 * 121.15977 * 355.91127 * 4 2 1 6 6 C 1.53535 * 107.57911 * 138.11038 * 5 4 2 7 7 H 1.09001 * 109.58370 * 298.42765 * 6 5 4 8 8 C 1.50696 * 109.58268 * 178.15160 * 6 5 4 9 9 O 1.21279 * 120.00074 * 245.00067 * 8 6 5 10 10 N 1.34783 * 120.00297 * 65.00196 * 8 6 5 11 11 C 1.46494 * 120.00108 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.47141 * 324.99725 * 11 10 8 13 13 C 1.53001 * 109.47295 * 85.00145 * 11 10 8 14 14 C 1.50704 * 109.46854 * 205.00102 * 11 10 8 15 15 H 1.07996 * 120.00244 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99589 * 180.02562 * 14 11 10 17 17 N 1.31509 * 120.00395 * 359.97438 * 16 14 11 18 18 Si 1.86808 * 119.99610 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46802 * 60.00145 * 18 16 14 20 20 H 1.48498 * 109.47125 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47100 * 299.99673 * 18 16 14 22 22 O 1.42957 * 108.79495 * 58.21862 * 6 5 4 23 23 C 1.35900 * 117.76800 * 310.50005 * 22 6 5 24 24 C 1.38705 * 119.66600 * 200.16112 * 23 22 6 25 25 C 1.38199 * 120.05289 * 180.20570 * 24 23 22 26 26 C 1.38274 * 120.29710 * 359.97438 * 25 24 23 27 27 C 1.38262 * 120.05988 * 359.70305 * 26 25 24 28 28 C 1.38583 * 119.87659 * 0.49749 * 27 26 25 29 29 H 1.09003 * 109.46646 * 274.08306 * 1 2 3 30 30 H 1.08999 * 109.47451 * 34.07505 * 1 2 3 31 31 H 1.08990 * 109.47563 * 154.08208 * 1 2 3 32 32 H 1.08995 * 109.83653 * 257.63531 * 5 4 2 33 33 H 1.09005 * 109.83396 * 18.59572 * 5 4 2 34 34 H 0.97002 * 119.99222 * 0.02562 * 10 8 6 35 35 H 1.09002 * 109.47369 * 59.99720 * 13 11 10 36 36 H 1.08996 * 109.47129 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.46913 * 299.99823 * 13 11 10 38 38 H 0.96999 * 120.00074 * 180.02562 * 17 16 14 39 39 H 1.08007 * 119.96901 * 0.18350 * 24 23 22 40 40 H 1.07999 * 119.84662 * 179.97438 * 25 24 23 41 41 H 1.07995 * 119.97000 * 179.97438 * 26 25 24 42 42 H 1.07996 * 120.06029 * 180.26050 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4731 -2.4559 0.0888 6 6 2.1431 -3.4224 -0.8984 7 1 2.0475 -3.0335 -1.9122 8 6 1.4809 -4.7732 -0.8109 9 8 2.1086 -5.7317 -0.4131 10 7 0.1910 -4.9163 -1.1748 11 6 -0.4528 -6.2294 -1.0893 12 1 0.2730 -7.0063 -1.3294 13 6 -0.9819 -6.4466 0.3298 14 6 -1.5977 -6.2921 -2.0673 15 1 -1.8234 -5.4390 -2.6900 16 6 -2.3577 -7.4382 -2.1664 17 7 -2.0832 -8.4769 -1.4079 18 14 -3.7773 -7.5157 -3.3782 19 1 -3.2641 -7.3052 -4.7557 20 1 -4.4299 -8.8468 -3.2916 21 1 -4.7657 -6.4571 -3.0509 22 8 3.5268 -3.5412 -0.5592 23 6 4.2327 -2.3956 -0.3691 24 6 5.6168 -2.4195 -0.4563 25 6 6.3428 -1.2601 -0.2602 26 6 5.6957 -0.0714 0.0232 27 6 4.3160 -0.0364 0.1056 28 6 3.5834 -1.1971 -0.0861 29 1 -0.3633 0.0732 1.0251 30 1 -0.3634 0.8512 -0.5758 31 1 -0.3634 -0.9242 -0.4491 32 1 1.5492 -2.8503 1.1020 33 1 0.4250 -2.3216 -0.1789 34 1 -0.3108 -4.1498 -1.4934 35 1 -1.7078 -5.6696 0.5699 36 1 -1.4605 -7.4237 0.3935 37 1 -0.1538 -6.4012 1.0371 38 1 -2.6177 -9.2833 -1.4778 39 1 6.1275 -3.3452 -0.6775 40 1 7.4204 -1.2826 -0.3285 41 1 6.2683 0.8314 0.1760 42 1 3.8104 0.8928 0.3228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751392223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:56 Heat of formation + Delta-G solvation = -79.524891 kcal Electronic energy + Delta-G solvation = -26866.773561 eV Core-core repulsion = 23005.146377 eV Total energy + Delta-G solvation = -3861.627184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.66883 -40.84866 -40.05539 -38.45300 -36.85459 -36.62368 -34.44760 -32.72749 -32.16321 -30.97559 -30.31926 -28.88228 -27.31213 -26.22588 -24.40509 -23.44307 -22.45134 -21.35214 -20.67477 -19.53123 -19.25293 -18.65913 -17.97085 -17.40440 -17.12781 -16.95788 -16.82802 -16.39484 -15.98850 -15.68960 -15.35258 -15.10446 -14.91522 -14.79949 -14.43955 -14.41354 -14.11755 -13.69566 -13.49682 -13.12561 -13.00521 -12.94177 -12.84717 -12.78133 -12.71450 -12.51019 -12.24073 -12.19351 -12.15018 -11.39637 -11.10798 -10.92725 -10.59096 -10.51661 -9.88024 -9.57522 -8.96178 -8.15778 -6.33387 0.16392 0.32897 1.29463 1.41624 1.47963 1.49944 1.55728 1.59666 1.61148 2.41211 2.64079 2.77201 3.13743 3.16564 3.26335 3.62396 3.65178 3.80133 3.83801 4.11036 4.25704 4.28581 4.36762 4.42154 4.53643 4.60633 4.75044 4.79319 4.94715 4.99047 5.10258 5.13408 5.25873 5.39353 5.41452 5.53701 5.55674 5.67156 5.78216 5.89561 6.03768 6.10384 6.25437 6.71893 6.81275 6.82684 7.28075 7.43601 8.90196 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.003308 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.686709 B = 8461.183431 C = 9410.588991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.555 6.555 4 N -0.555 5.555 5 C 0.080 3.920 6 C 0.068 3.932 7 H 0.120 0.880 8 C 0.515 3.485 9 O -0.575 6.575 10 N -0.688 5.688 11 C 0.272 3.728 12 H -0.002 1.002 13 C -0.136 4.136 14 C -0.546 4.546 15 H 0.080 0.920 16 C 0.016 3.984 17 N -0.918 5.918 18 Si 0.970 3.030 19 H -0.272 1.272 20 H -0.291 1.291 21 H -0.260 1.260 22 O -0.310 6.310 23 C 0.072 3.928 24 C -0.137 4.137 25 C -0.098 4.098 26 C -0.129 4.129 27 C -0.135 4.135 28 C 0.057 3.943 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.156 0.844 34 H 0.411 0.589 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.012 0.988 38 H 0.265 0.735 39 H 0.140 0.860 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.676 18.922 2.076 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.307 3.693 3 O -0.434 6.434 4 N -0.280 5.280 5 C -0.042 4.042 6 C 0.007 3.993 7 H 0.138 0.862 8 C 0.298 3.702 9 O -0.454 6.454 10 N -0.338 5.338 11 C 0.170 3.830 12 H 0.016 0.984 13 C -0.195 4.195 14 C -0.584 4.584 15 H 0.098 0.902 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.185 1.185 22 O -0.224 6.224 23 C 0.026 3.974 24 C -0.156 4.156 25 C -0.116 4.116 26 C -0.148 4.148 27 C -0.155 4.155 28 C -0.037 4.037 29 H 0.138 0.862 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.174 0.826 34 H 0.247 0.753 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.158 0.842 40 H 0.180 0.820 41 H 0.172 0.828 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.303 18.422 2.414 19.963 hybrid contribution -0.800 -0.500 -0.616 1.127 sum 6.503 17.921 1.798 19.149 Atomic orbital electron populations 1.22136 0.86454 1.07142 1.07288 1.21885 0.92645 0.81066 0.73714 1.90483 1.70514 1.32070 1.50300 1.45948 1.04127 1.07751 1.70187 1.22815 0.99548 0.81165 1.00721 1.22578 0.81188 0.94051 1.01443 0.86207 1.20098 0.82758 0.89089 0.78211 1.90710 1.64725 1.42245 1.47755 1.46095 1.09931 1.13718 1.64104 1.18423 0.91102 0.79415 0.94096 0.98364 1.21916 0.98502 1.02762 0.96271 1.21507 1.14112 1.01054 1.21700 0.90168 1.25766 1.00182 0.94975 0.97514 1.70043 1.40953 1.04487 1.40109 0.85423 0.78832 0.77333 0.78905 1.19768 1.21720 1.18464 1.86121 1.21740 1.28990 1.85540 1.18987 0.92495 0.83995 1.01969 1.20752 0.89733 1.00940 1.04215 1.21321 1.01394 0.90785 0.98112 1.21457 0.93431 0.99378 1.00513 1.22150 0.95038 0.98377 0.99888 1.18275 0.83574 0.95043 1.06811 0.86155 0.86935 0.87407 0.88861 0.82624 0.75268 0.93077 0.91609 0.96853 0.92592 0.84189 0.81995 0.82790 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.77 71.24 0.70 -1.14 16 2 C 0.51 10.74 7.76 87.66 0.68 11.42 16 3 O -0.55 -15.03 13.80 -3.09 -0.04 -15.08 16 4 N -0.56 -12.85 3.01 -627.71 -1.89 -14.74 16 5 C 0.08 1.68 5.76 86.41 0.50 2.18 16 6 C 0.07 1.93 3.37 30.03 0.10 2.03 16 7 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 8 C 0.51 19.14 7.16 87.65 0.63 19.77 16 9 O -0.58 -28.01 16.18 15.85 0.26 -27.76 16 10 N -0.69 -24.65 5.03 -446.10 -2.25 -26.90 16 11 C 0.27 12.97 2.56 44.25 0.11 13.08 16 12 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 13 C -0.14 -6.29 9.26 71.98 0.67 -5.63 16 14 C -0.55 -26.47 8.73 25.60 0.22 -26.25 16 15 H 0.08 3.52 7.74 -2.91 -0.02 3.49 16 16 C 0.02 0.81 5.30 84.66 0.45 1.26 16 17 N -0.92 -50.44 11.32 21.45 0.24 -50.20 16 18 Si 0.97 39.54 29.54 68.60 2.03 41.57 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 20 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 22 O -0.31 -10.47 9.52 -73.55 -0.70 -11.17 16 23 C 0.07 2.12 6.51 22.62 0.15 2.27 16 24 C -0.14 -3.43 9.97 22.37 0.22 -3.21 16 25 C -0.10 -1.89 10.03 22.27 0.22 -1.66 16 26 C -0.13 -2.61 10.05 22.28 0.22 -2.38 16 27 C -0.13 -3.44 9.03 22.36 0.20 -3.23 16 28 C 0.06 1.56 6.34 38.06 0.24 1.80 16 29 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.11 0.72 5.83 -2.39 -0.01 0.71 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.16 1.99 5.40 -2.38 -0.01 1.98 16 34 H 0.41 11.02 8.42 -92.71 -0.78 10.24 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 3.43 6.07 -2.39 -0.01 3.42 16 37 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 39 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 40 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 42 H 0.16 4.42 4.90 -21.07 -0.10 4.32 16 Total: -1.00 -73.85 348.59 3.16 -70.69 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.20 Total: 23.26 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 5.32 Total: 10.31 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -3.89 Total: -91.84 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -0.49 Total: -54.00 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -73.85 3.16 -70.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751392223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.832 kcal (2) G-P(sol) polarization free energy of solvation -73.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds