Wall clock time and date at job start Tue Mar 31 2020 12:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21293 * 119.99691 * 2 1 4 4 N 1.34770 * 120.00129 * 180.02562 * 2 1 3 5 5 C 1.47304 * 121.16254 * 5.79947 * 4 2 1 6 6 C 1.53535 * 107.57279 * 138.02969 * 5 4 2 7 7 H 1.09005 * 109.57968 * 298.28727 * 6 5 4 8 8 C 1.50702 * 109.58336 * 178.01726 * 6 5 4 9 9 O 1.21285 * 119.99641 * 244.99966 * 8 6 5 10 10 N 1.34781 * 119.99984 * 64.99372 * 8 6 5 11 11 C 1.46498 * 119.99947 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.46948 * 34.99680 * 11 10 8 13 13 C 1.53000 * 109.46949 * 275.00407 * 11 10 8 14 14 C 1.50693 * 109.47437 * 155.00218 * 11 10 8 15 15 H 1.08001 * 119.99673 * 34.90576 * 14 11 10 16 16 C 1.37874 * 120.00288 * 214.91133 * 14 11 10 17 17 N 1.31514 * 120.00209 * 184.83980 * 16 14 11 18 18 Si 1.86799 * 119.99928 * 4.83875 * 16 14 11 19 19 H 1.48510 * 109.46733 * 94.81976 * 18 16 14 20 20 H 1.48501 * 109.47290 * 214.81493 * 18 16 14 21 21 H 1.48502 * 109.47421 * 334.82302 * 18 16 14 22 22 O 1.42952 * 108.80441 * 58.22013 * 6 5 4 23 23 C 1.35902 * 117.77220 * 310.53762 * 22 6 5 24 24 C 1.38715 * 119.65911 * 200.09776 * 23 22 6 25 25 C 1.38196 * 120.05007 * 180.18794 * 24 23 22 26 26 C 1.38276 * 120.29591 * 0.04100 * 25 24 23 27 27 C 1.38252 * 120.06379 * 359.90201 * 26 25 24 28 28 C 1.38579 * 119.87563 * 0.02562 * 27 26 25 29 29 H 1.08996 * 109.47541 * 264.57071 * 1 2 3 30 30 H 1.08996 * 109.47563 * 24.57791 * 1 2 3 31 31 H 1.09001 * 109.46913 * 144.57441 * 1 2 3 32 32 H 1.08997 * 109.83882 * 18.50936 * 5 4 2 33 33 H 1.09000 * 109.83499 * 257.54754 * 5 4 2 34 34 H 0.97003 * 120.00132 * 0.02562 * 10 8 6 35 35 H 1.09004 * 109.46991 * 295.01520 * 13 11 10 36 36 H 1.09004 * 109.47206 * 175.01919 * 13 11 10 37 37 H 1.08997 * 109.47570 * 55.01878 * 13 11 10 38 38 H 0.96995 * 120.00431 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.97167 * 0.21353 * 24 23 22 40 40 H 1.07994 * 119.85552 * 180.02562 * 25 24 23 41 41 H 1.08001 * 119.97013 * 179.97438 * 26 25 24 42 42 H 1.08005 * 120.06901 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4760 -2.4542 -0.1285 6 6 2.2907 -3.3357 -1.0859 7 1 2.3410 -2.8611 -2.0659 8 6 1.6335 -4.6860 -1.2119 9 8 2.2040 -5.6779 -0.8098 10 7 0.4118 -4.7914 -1.7712 11 6 -0.2273 -6.1039 -1.8932 12 1 0.0347 -6.7171 -1.0309 13 6 0.2564 -6.7898 -3.1724 14 6 -1.7232 -5.9310 -1.9507 15 1 -2.1486 -5.0715 -2.4473 16 6 -2.5486 -6.8699 -1.3694 17 7 -3.8533 -6.7701 -1.5011 18 14 -1.8138 -8.2839 -0.3946 19 1 -1.7854 -7.9291 1.0472 20 1 -2.6413 -9.5016 -0.5885 21 1 -0.4305 -8.5449 -0.8674 22 8 3.6099 -3.4923 -0.5581 23 6 4.2724 -2.3721 -0.1666 24 6 5.6544 -2.3977 -0.0493 25 6 6.3359 -1.2644 0.3519 26 6 5.6463 -0.1008 0.6391 27 6 4.2691 -0.0655 0.5239 28 6 3.5808 -1.1987 0.1206 29 1 -0.3634 -0.0972 1.0230 30 1 -0.3634 0.9345 -0.4274 31 1 -0.3633 -0.8374 -0.5957 32 1 0.4780 -2.2906 -0.5350 33 1 1.4046 -2.9354 0.8470 34 1 -0.0444 -3.9981 -2.0930 35 1 -0.0822 -6.2222 -4.0393 36 1 -0.1495 -7.8003 -3.2187 37 1 1.3454 -6.8354 -3.1708 38 1 -4.4341 -7.4308 -1.0924 39 1 6.1981 -3.3038 -0.2722 40 1 7.4118 -1.2877 0.4417 41 1 6.1842 0.7817 0.9526 42 1 3.7304 0.8435 0.7479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751392224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:01 Heat of formation + Delta-G solvation = -61.218136 kcal Electronic energy + Delta-G solvation = -26970.676822 eV Core-core repulsion = 23109.843479 eV Total energy + Delta-G solvation = -3860.833343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66608 -39.63049 -38.92956 -37.41422 -35.76097 -35.02814 -32.64825 -31.72564 -31.25213 -30.07549 -29.41382 -27.96007 -25.48748 -25.12465 -23.46449 -22.11736 -21.01658 -19.91155 -19.71155 -18.44003 -17.98713 -17.69504 -16.79233 -16.30572 -16.07959 -15.80495 -15.54232 -15.20003 -14.77710 -14.38699 -14.16096 -13.97752 -13.83182 -13.55051 -13.30155 -13.24247 -12.71022 -12.66061 -12.54456 -12.42917 -12.03913 -11.93768 -11.65335 -11.54094 -11.23455 -11.16056 -10.92968 -10.73385 -10.44078 -9.95458 -9.81286 -9.36660 -9.31528 -8.83118 -8.61229 -8.33628 -7.99234 -6.35828 -4.40907 1.07636 1.27812 2.25270 2.30656 2.70268 2.89109 3.17289 3.26898 3.33835 3.66279 3.84115 4.08106 4.20220 4.21672 4.55465 4.67110 4.72070 4.88106 4.93059 4.97734 5.10947 5.13809 5.15885 5.25983 5.31781 5.35924 5.58256 5.68656 6.00960 6.13413 6.21628 6.26589 6.39422 6.42531 6.55163 6.67342 6.79221 6.90732 7.01412 7.18583 7.26302 7.36202 7.70013 7.92534 8.33947 8.60424 8.68391 9.25220 10.75287 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.003705 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.236375 B = 7556.525948 C = 8609.466215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.518 3.482 3 O -0.523 6.523 4 N -0.556 5.556 5 C 0.073 3.927 6 C 0.061 3.939 7 H 0.101 0.899 8 C 0.511 3.489 9 O -0.525 6.525 10 N -0.696 5.696 11 C 0.229 3.771 12 H 0.056 0.944 13 C -0.149 4.149 14 C -0.533 4.533 15 H 0.080 0.920 16 C 0.083 3.917 17 N -0.885 5.885 18 Si 0.870 3.130 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.256 1.256 22 O -0.281 6.281 23 C 0.099 3.901 24 C -0.126 4.126 25 C -0.106 4.106 26 C -0.134 4.134 27 C -0.113 4.113 28 C 0.075 3.925 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.393 0.607 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.030 0.970 38 H 0.269 0.731 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.299 12.841 2.776 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.310 3.690 3 O -0.400 6.400 4 N -0.281 5.281 5 C -0.050 4.050 6 C -0.001 4.001 7 H 0.118 0.882 8 C 0.293 3.707 9 O -0.400 6.400 10 N -0.346 5.346 11 C 0.128 3.872 12 H 0.074 0.926 13 C -0.208 4.208 14 C -0.571 4.571 15 H 0.098 0.902 16 C -0.122 4.122 17 N -0.520 5.520 18 Si 0.696 3.304 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.180 1.180 22 O -0.193 6.193 23 C 0.051 3.949 24 C -0.146 4.146 25 C -0.125 4.125 26 C -0.153 4.153 27 C -0.133 4.133 28 C -0.019 4.019 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.138 0.862 33 H 0.118 0.882 34 H 0.227 0.773 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 12.768 12.386 3.101 18.057 hybrid contribution -0.214 -0.370 0.288 0.515 sum 12.554 12.016 3.389 17.705 Atomic orbital electron populations 1.22047 0.90028 1.05956 1.05597 1.21046 0.91060 0.81960 0.74940 1.90572 1.69968 1.31000 1.48460 1.45860 1.04832 1.07365 1.70085 1.22770 0.97225 0.82782 1.02211 1.22704 0.82902 0.96690 0.97780 0.88185 1.19627 0.82774 0.88463 0.79854 1.90722 1.63217 1.37711 1.48399 1.46664 1.15801 1.12765 1.59408 1.19311 0.92771 0.79975 0.95132 0.92592 1.22227 0.98206 1.00713 0.99624 1.20958 0.87502 1.10935 1.37679 0.90199 1.24929 0.94636 0.97570 0.95042 1.69871 1.02898 1.36002 1.43273 0.86933 0.80198 0.82192 0.81066 1.19920 1.20882 1.17989 1.86176 1.27281 1.28530 1.77356 1.18704 0.91789 0.85175 0.99208 1.20437 0.90080 0.99955 1.04084 1.20945 0.99911 0.92161 0.99440 1.21048 0.93726 0.98314 1.02198 1.21717 0.94560 0.98599 0.98410 1.18032 0.82528 0.95783 1.05543 0.87995 0.88104 0.89047 0.86173 0.88221 0.77341 0.93274 0.92719 0.95121 0.92098 0.84625 0.85334 0.85568 0.82040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.71 36.01 0.35 -1.03 16 2 C 0.52 6.09 7.70 -10.99 -0.08 6.01 16 3 O -0.52 -7.54 13.97 5.55 0.08 -7.47 16 4 N -0.56 -6.90 3.01 -112.34 -0.34 -7.24 16 5 C 0.07 0.85 5.69 -3.33 -0.02 0.83 16 6 C 0.06 0.85 3.37 -27.60 -0.09 0.76 16 7 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 8 C 0.51 9.06 7.15 -10.98 -0.08 8.98 16 9 O -0.52 -11.64 16.17 -14.25 -0.23 -11.87 16 10 N -0.70 -12.25 5.03 -54.93 -0.28 -12.52 16 11 C 0.23 5.01 2.19 -69.09 -0.15 4.85 16 12 H 0.06 1.35 4.51 -51.93 -0.23 1.12 16 13 C -0.15 -3.05 9.47 37.16 0.35 -2.69 16 14 C -0.53 -13.13 9.05 -34.44 -0.31 -13.44 16 15 H 0.08 2.06 8.06 -52.49 -0.42 1.63 16 16 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 17 N -0.88 -24.57 13.96 55.43 0.77 -23.79 16 18 Si 0.87 20.26 27.31 -169.99 -4.64 15.62 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.26 -5.91 6.37 56.52 0.36 -5.55 16 22 O -0.28 -4.53 9.51 -39.24 -0.37 -4.90 16 23 C 0.10 1.42 6.52 -39.05 -0.25 1.17 16 24 C -0.13 -1.57 9.97 -39.42 -0.39 -1.96 16 25 C -0.11 -1.10 10.03 -39.58 -0.40 -1.50 16 26 C -0.13 -1.46 10.05 -39.56 -0.40 -1.86 16 27 C -0.11 -1.48 8.94 -39.45 -0.35 -1.83 16 28 C 0.07 1.04 6.33 -83.37 -0.53 0.51 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.59 6.01 -51.93 -0.31 0.28 16 32 H 0.12 1.06 5.59 -51.93 -0.29 0.77 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.39 5.68 8.48 -40.82 -0.35 5.33 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.16 2.22 5.16 -52.56 -0.27 1.94 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -32.62 348.46 -7.50 -40.12 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.28 Total: 5.92 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.46 Total: 0.88 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.16 Total: -43.55 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.53 Total: -24.23 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.64 Total: 15.62 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.62 -7.50 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751392224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.097 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds