Wall clock time and date at job start Tue Mar 31 2020 12:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21293 * 119.99691 * 2 1 4 4 N 1.34770 * 120.00129 * 180.02562 * 2 1 3 5 5 C 1.47304 * 121.16254 * 5.79947 * 4 2 1 6 6 C 1.53535 * 107.57279 * 138.02969 * 5 4 2 7 7 H 1.09005 * 109.57968 * 298.28727 * 6 5 4 8 8 C 1.50702 * 109.58336 * 178.01726 * 6 5 4 9 9 O 1.21285 * 119.99641 * 244.99966 * 8 6 5 10 10 N 1.34781 * 119.99984 * 64.99372 * 8 6 5 11 11 C 1.46498 * 119.99947 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.46948 * 34.99680 * 11 10 8 13 13 C 1.53000 * 109.46949 * 275.00407 * 11 10 8 14 14 C 1.50693 * 109.47437 * 155.00218 * 11 10 8 15 15 H 1.08001 * 119.99673 * 34.90576 * 14 11 10 16 16 C 1.37874 * 120.00288 * 214.91133 * 14 11 10 17 17 N 1.31514 * 120.00209 * 184.83980 * 16 14 11 18 18 Si 1.86799 * 119.99928 * 4.83875 * 16 14 11 19 19 H 1.48510 * 109.46733 * 94.81976 * 18 16 14 20 20 H 1.48501 * 109.47290 * 214.81493 * 18 16 14 21 21 H 1.48502 * 109.47421 * 334.82302 * 18 16 14 22 22 O 1.42952 * 108.80441 * 58.22013 * 6 5 4 23 23 C 1.35902 * 117.77220 * 310.53762 * 22 6 5 24 24 C 1.38715 * 119.65911 * 200.09776 * 23 22 6 25 25 C 1.38196 * 120.05007 * 180.18794 * 24 23 22 26 26 C 1.38276 * 120.29591 * 0.04100 * 25 24 23 27 27 C 1.38252 * 120.06379 * 359.90201 * 26 25 24 28 28 C 1.38579 * 119.87563 * 0.02562 * 27 26 25 29 29 H 1.08996 * 109.47541 * 264.57071 * 1 2 3 30 30 H 1.08996 * 109.47563 * 24.57791 * 1 2 3 31 31 H 1.09001 * 109.46913 * 144.57441 * 1 2 3 32 32 H 1.08997 * 109.83882 * 18.50936 * 5 4 2 33 33 H 1.09000 * 109.83499 * 257.54754 * 5 4 2 34 34 H 0.97003 * 120.00132 * 0.02562 * 10 8 6 35 35 H 1.09004 * 109.46991 * 295.01520 * 13 11 10 36 36 H 1.09004 * 109.47206 * 175.01919 * 13 11 10 37 37 H 1.08997 * 109.47570 * 55.01878 * 13 11 10 38 38 H 0.96995 * 120.00431 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.97167 * 0.21353 * 24 23 22 40 40 H 1.07994 * 119.85552 * 180.02562 * 25 24 23 41 41 H 1.08001 * 119.97013 * 179.97438 * 26 25 24 42 42 H 1.08005 * 120.06901 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4760 -2.4542 -0.1285 6 6 2.2907 -3.3357 -1.0859 7 1 2.3410 -2.8611 -2.0659 8 6 1.6335 -4.6860 -1.2119 9 8 2.2040 -5.6779 -0.8098 10 7 0.4118 -4.7914 -1.7712 11 6 -0.2273 -6.1039 -1.8932 12 1 0.0347 -6.7171 -1.0309 13 6 0.2564 -6.7898 -3.1724 14 6 -1.7232 -5.9310 -1.9507 15 1 -2.1486 -5.0715 -2.4473 16 6 -2.5486 -6.8699 -1.3694 17 7 -3.8533 -6.7701 -1.5011 18 14 -1.8138 -8.2839 -0.3946 19 1 -1.7854 -7.9291 1.0472 20 1 -2.6413 -9.5016 -0.5885 21 1 -0.4305 -8.5449 -0.8674 22 8 3.6099 -3.4923 -0.5581 23 6 4.2724 -2.3721 -0.1666 24 6 5.6544 -2.3977 -0.0493 25 6 6.3359 -1.2644 0.3519 26 6 5.6463 -0.1008 0.6391 27 6 4.2691 -0.0655 0.5239 28 6 3.5808 -1.1987 0.1206 29 1 -0.3634 -0.0972 1.0230 30 1 -0.3634 0.9345 -0.4274 31 1 -0.3633 -0.8374 -0.5957 32 1 0.4780 -2.2906 -0.5350 33 1 1.4046 -2.9354 0.8470 34 1 -0.0444 -3.9981 -2.0930 35 1 -0.0822 -6.2222 -4.0393 36 1 -0.1495 -7.8003 -3.2187 37 1 1.3454 -6.8354 -3.1708 38 1 -4.4341 -7.4308 -1.0924 39 1 6.1981 -3.3038 -0.2722 40 1 7.4118 -1.2877 0.4417 41 1 6.1842 0.7817 0.9526 42 1 3.7304 0.8435 0.7479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751392224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:00 Heat of formation + Delta-G solvation = -82.545595 kcal Electronic energy + Delta-G solvation = -26971.601650 eV Core-core repulsion = 23109.843479 eV Total energy + Delta-G solvation = -3861.758171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.66757 -40.88130 -40.07316 -38.46924 -36.85515 -36.62412 -34.45597 -32.94181 -32.20618 -31.25093 -30.52996 -28.90321 -27.32048 -26.24906 -24.40223 -23.35006 -22.32117 -21.43241 -20.66783 -19.60174 -19.42589 -18.62026 -18.27582 -17.39728 -17.22517 -17.06064 -16.86610 -16.33524 -15.93848 -15.63452 -15.50478 -15.07228 -14.84765 -14.80631 -14.55318 -14.41700 -14.34474 -14.12020 -13.52731 -13.29777 -13.18914 -13.02358 -12.89762 -12.81473 -12.77169 -12.52256 -12.45691 -12.18366 -11.84075 -11.39662 -11.19461 -10.99510 -10.80752 -10.62824 -9.94344 -9.56600 -8.96025 -8.36890 -6.42963 0.15535 0.32268 1.26452 1.30046 1.38366 1.40420 1.47695 1.53945 1.58844 2.28986 2.57712 2.76397 3.02779 3.14913 3.26469 3.60597 3.64175 3.78138 3.84756 4.10616 4.25125 4.28587 4.36358 4.41849 4.48093 4.51487 4.57390 4.72704 4.76980 4.83198 4.97536 5.09560 5.12990 5.23728 5.34750 5.38969 5.45878 5.53152 5.64037 5.75778 6.02034 6.10259 6.24503 6.62072 6.75104 6.80325 7.18899 7.31022 8.77203 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.003705 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.236375 B = 7556.525948 C = 8609.466215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.514 3.486 3 O -0.554 6.554 4 N -0.557 5.557 5 C 0.078 3.922 6 C 0.068 3.932 7 H 0.122 0.878 8 C 0.517 3.483 9 O -0.571 6.571 10 N -0.687 5.687 11 C 0.233 3.767 12 H 0.036 0.964 13 C -0.145 4.145 14 C -0.521 4.521 15 H 0.066 0.934 16 C 0.039 3.961 17 N -0.925 5.925 18 Si 0.916 3.084 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.255 1.255 22 O -0.307 6.307 23 C 0.073 3.927 24 C -0.135 4.135 25 C -0.097 4.097 26 C -0.128 4.128 27 C -0.129 4.129 28 C 0.058 3.942 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.151 0.849 33 H 0.093 0.907 34 H 0.411 0.589 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.035 0.965 38 H 0.270 0.730 39 H 0.143 0.857 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.440 13.972 2.846 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.307 3.693 3 O -0.433 6.433 4 N -0.282 5.282 5 C -0.045 4.045 6 C 0.007 3.993 7 H 0.140 0.860 8 C 0.301 3.699 9 O -0.450 6.450 10 N -0.338 5.338 11 C 0.130 3.870 12 H 0.054 0.946 13 C -0.203 4.203 14 C -0.559 4.559 15 H 0.084 0.916 16 C -0.162 4.162 17 N -0.564 5.564 18 Si 0.742 3.258 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.180 1.180 22 O -0.221 6.221 23 C 0.026 3.974 24 C -0.153 4.153 25 C -0.116 4.116 26 C -0.147 4.147 27 C -0.149 4.149 28 C -0.036 4.036 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.169 0.831 33 H 0.111 0.889 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.161 0.839 40 H 0.181 0.819 41 H 0.172 0.828 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 13.905 13.550 3.161 19.671 hybrid contribution -0.454 -0.627 0.254 0.815 sum 13.451 12.923 3.416 18.963 Atomic orbital electron populations 1.22128 0.86790 1.07199 1.06970 1.21790 0.92488 0.81174 0.73814 1.90558 1.70927 1.31936 1.49895 1.45956 1.04480 1.07722 1.70017 1.22800 0.98000 0.82173 1.01504 1.22578 0.82711 0.94417 0.99581 0.86035 1.20064 0.82147 0.89391 0.78318 1.90701 1.64334 1.39760 1.50217 1.46255 1.16019 1.12120 1.59427 1.19044 0.91370 0.81587 0.95045 0.94646 1.22148 0.98455 1.00469 0.99274 1.21118 0.88874 1.09837 1.36110 0.91562 1.25503 0.94844 0.99652 0.96204 1.69956 1.03981 1.37292 1.45134 0.86192 0.79485 0.80240 0.79904 1.19929 1.20549 1.17963 1.86113 1.28037 1.29890 1.78016 1.18961 0.92552 0.85001 1.00869 1.20757 0.89619 1.01077 1.03897 1.21319 1.01531 0.91015 0.97714 1.21422 0.93040 0.99509 1.00711 1.21806 0.95675 0.98119 0.99299 1.18245 0.83446 0.95907 1.05972 0.86463 0.87186 0.87382 0.83143 0.88854 0.75242 0.91957 0.93287 0.94628 0.92044 0.83912 0.81886 0.82826 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 9.71 71.24 0.69 -1.55 16 2 C 0.51 11.37 7.70 87.66 0.68 12.04 16 3 O -0.55 -15.63 13.97 -3.07 -0.04 -15.67 16 4 N -0.56 -13.15 3.01 -627.73 -1.89 -15.04 16 5 C 0.08 1.68 5.69 86.41 0.49 2.17 16 6 C 0.07 1.83 3.37 30.03 0.10 1.93 16 7 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 8 C 0.52 17.81 7.15 87.66 0.63 18.44 16 9 O -0.57 -25.28 16.17 15.90 0.26 -25.02 16 10 N -0.69 -23.15 5.03 -446.10 -2.25 -25.39 16 11 C 0.23 9.92 2.19 44.24 0.10 10.01 16 12 H 0.04 1.69 4.51 -2.39 -0.01 1.68 16 13 C -0.14 -5.73 9.47 71.98 0.68 -5.05 16 14 C -0.52 -25.33 9.05 25.60 0.23 -25.10 16 15 H 0.07 3.36 8.06 -2.91 -0.02 3.34 16 16 C 0.04 2.04 5.47 84.65 0.46 2.50 16 17 N -0.93 -51.57 13.96 21.45 0.30 -51.27 16 18 Si 0.92 41.69 27.31 68.60 1.87 43.56 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.26 -11.51 6.37 99.48 0.63 -10.88 16 22 O -0.31 -9.79 9.51 -73.51 -0.70 -10.49 16 23 C 0.07 2.06 6.52 22.62 0.15 2.21 16 24 C -0.13 -3.17 9.97 22.37 0.22 -2.94 16 25 C -0.10 -1.78 10.03 22.27 0.22 -1.56 16 26 C -0.13 -2.52 10.05 22.28 0.22 -2.29 16 27 C -0.13 -3.26 8.94 22.35 0.20 -3.06 16 28 C 0.06 1.57 6.33 38.05 0.24 1.81 16 29 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 1.03 6.01 -2.39 -0.01 1.02 16 32 H 0.15 2.22 5.59 -2.39 -0.01 2.21 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.41 10.95 8.48 -92.71 -0.79 10.17 16 35 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 39 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.15 4.15 5.16 -4.11 -0.02 4.12 16 Total: -1.00 -71.36 348.46 3.07 -68.29 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.20 Total: 21.46 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 5.32 Total: 9.56 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -3.84 Total: -91.70 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -0.48 Total: -51.18 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.87 Total: 43.56 kcal Total: -71.36 3.07 -68.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751392224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.256 kcal (2) G-P(sol) polarization free energy of solvation -71.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds