Wall clock time and date at job start Tue Mar 31 2020 12:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21303 * 120.00037 * 2 1 4 4 N 1.34776 * 120.00342 * 179.97438 * 2 1 3 5 5 C 1.47317 * 121.07190 * 3.69076 * 4 2 1 6 6 C 1.53533 * 107.56410 * 221.88105 * 5 4 2 7 7 H 1.09010 * 109.57615 * 61.87927 * 6 5 4 8 8 C 1.50693 * 109.58033 * 182.13777 * 6 5 4 9 9 O 1.21293 * 119.99572 * 114.74058 * 8 6 5 10 10 N 1.34772 * 120.00568 * 294.74082 * 8 6 5 11 11 C 1.46504 * 120.00049 * 179.97438 * 10 8 6 12 12 H 1.08998 * 109.47008 * 35.00141 * 11 10 8 13 13 C 1.52997 * 109.47033 * 274.99769 * 11 10 8 14 14 C 1.50701 * 109.46777 * 154.99792 * 11 10 8 15 15 H 1.08005 * 119.99963 * 95.11043 * 14 11 10 16 16 C 1.37875 * 120.00410 * 275.10694 * 14 11 10 17 17 N 1.31511 * 119.99703 * 355.06263 * 16 14 11 18 18 Si 1.86801 * 120.00334 * 175.06902 * 16 14 11 19 19 H 1.48493 * 109.47175 * 89.99704 * 18 16 14 20 20 H 1.48494 * 109.46955 * 210.00007 * 18 16 14 21 21 H 1.48501 * 109.46851 * 329.99521 * 18 16 14 22 22 O 1.42952 * 108.93192 * 302.01490 * 6 5 4 23 23 C 1.35895 * 117.78407 * 49.35844 * 22 6 5 24 24 C 1.38713 * 119.66061 * 159.80724 * 23 22 6 25 25 C 1.38206 * 120.04769 * 179.82665 * 24 23 22 26 26 C 1.38283 * 120.29846 * 0.02562 * 25 24 23 27 27 C 1.38259 * 120.05756 * 0.06481 * 26 25 24 28 28 C 1.38583 * 119.87819 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47118 * 274.63501 * 1 2 3 30 30 H 1.08997 * 109.47722 * 34.63788 * 1 2 3 31 31 H 1.09004 * 109.47103 * 154.64062 * 1 2 3 32 32 H 1.09001 * 109.73498 * 102.43379 * 5 4 2 33 33 H 1.09000 * 109.94863 * 341.45908 * 5 4 2 34 34 H 0.97002 * 119.99641 * 359.97438 * 10 8 6 35 35 H 1.09006 * 109.47249 * 295.01908 * 13 11 10 36 36 H 1.09001 * 109.46989 * 55.01416 * 13 11 10 37 37 H 1.09002 * 109.47265 * 175.01536 * 13 11 10 38 38 H 0.97009 * 120.00077 * 5.06305 * 17 16 14 39 39 H 1.07994 * 119.97860 * 359.82991 * 24 23 22 40 40 H 1.07999 * 119.85081 * 179.97438 * 25 24 23 41 41 H 1.07996 * 119.97613 * 180.08299 * 26 25 24 42 42 H 1.07997 * 120.06142 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4706 -2.4553 -0.0801 6 6 2.1456 -3.4191 0.9061 7 1 2.0521 -3.0292 1.9198 8 6 1.4858 -4.7713 0.8224 9 8 2.1130 -5.7281 0.4193 10 7 0.1990 -4.9176 1.1953 11 6 -0.4425 -6.2322 1.1134 12 1 0.2869 -7.0076 1.3477 13 6 -0.9811 -6.4495 -0.3021 14 6 -1.5802 -6.2982 2.0995 15 1 -2.5869 -6.0751 1.7782 16 6 -1.3360 -6.6436 3.4117 17 7 -0.1281 -7.0095 3.7815 18 14 -2.7208 -6.5920 4.6644 19 1 -3.4018 -7.9110 4.7040 20 1 -2.1637 -6.2821 6.0055 21 1 -3.6976 -5.5419 4.2794 22 8 3.5286 -3.5387 0.5647 23 6 4.2338 -2.3939 0.3677 24 6 5.6181 -2.4171 0.4529 25 6 6.3434 -1.2582 0.2505 26 6 5.6955 -0.0709 -0.0371 27 6 4.3159 -0.0378 -0.1222 28 6 3.5838 -1.1969 0.0807 29 1 -0.3633 0.0830 1.0243 30 1 -0.3634 0.8455 -0.5841 31 1 -0.3633 -0.9287 -0.4402 32 1 1.5422 -2.8523 -1.0927 33 1 0.4238 -2.3205 0.1922 34 1 -0.3024 -4.1525 1.5180 35 1 -1.7733 -5.7285 -0.5040 36 1 -0.1744 -6.3140 -1.0225 37 1 -1.3792 -7.4605 -0.3882 38 1 0.6066 -6.9662 3.1495 39 1 6.1295 -3.3414 0.6775 40 1 7.4211 -1.2798 0.3180 41 1 6.2675 0.8313 -0.1957 42 1 3.8098 0.8893 -0.3472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751392225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:05 Heat of formation + Delta-G solvation = -67.646746 kcal Electronic energy + Delta-G solvation = -27137.540670 eV Core-core repulsion = 23276.428562 eV Total energy + Delta-G solvation = -3861.112109 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.60610 -39.53295 -38.80411 -37.31600 -35.72299 -35.04513 -32.51917 -31.60701 -31.13505 -29.94219 -29.25770 -27.91324 -25.13377 -24.81023 -23.40974 -22.09862 -21.24471 -19.92302 -19.57037 -18.40402 -17.83440 -17.68221 -16.93990 -16.18533 -15.94380 -15.81975 -15.29755 -14.92354 -14.57913 -14.25065 -13.99349 -13.94405 -13.83479 -13.56027 -13.45967 -13.34683 -13.00119 -12.65449 -12.38608 -12.08200 -11.93442 -11.88413 -11.52389 -11.36152 -11.13090 -11.10264 -10.96440 -10.40627 -10.33347 -10.19691 -9.69525 -9.37406 -8.96180 -8.60279 -8.55439 -8.08865 -7.93368 -6.67374 -4.50176 1.13814 1.35125 2.28195 2.33554 2.83347 3.09438 3.28244 3.29084 3.45696 3.72427 3.97211 4.09790 4.28467 4.30734 4.62099 4.74132 4.78901 4.89901 4.97930 5.03063 5.09021 5.21086 5.31912 5.32392 5.38985 5.45436 5.52689 5.75129 6.07133 6.21049 6.22600 6.32583 6.37591 6.45904 6.48802 6.76582 6.89161 6.94422 7.08378 7.29825 7.46978 7.69738 7.72742 8.11885 8.40059 8.57345 8.89396 9.30626 10.68938 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.003737 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.482490 B = 7491.835098 C = 8176.391350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.519 3.481 3 O -0.524 6.524 4 N -0.554 5.554 5 C 0.075 3.925 6 C 0.057 3.943 7 H 0.098 0.902 8 C 0.507 3.493 9 O -0.531 6.531 10 N -0.696 5.696 11 C 0.235 3.765 12 H 0.056 0.944 13 C -0.140 4.140 14 C -0.608 4.608 15 H 0.059 0.941 16 C 0.031 3.969 17 N -0.884 5.884 18 Si 1.072 2.928 19 H -0.284 1.284 20 H -0.283 1.283 21 H -0.285 1.285 22 O -0.280 6.280 23 C 0.100 3.900 24 C -0.128 4.128 25 C -0.105 4.105 26 C -0.137 4.137 27 C -0.119 4.119 28 C 0.071 3.929 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.385 0.615 35 H 0.041 0.959 36 H 0.032 0.968 37 H 0.053 0.947 38 H 0.278 0.722 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.702 13.992 -6.819 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.310 3.690 3 O -0.401 6.401 4 N -0.279 5.279 5 C -0.047 4.047 6 C -0.004 4.004 7 H 0.116 0.884 8 C 0.289 3.711 9 O -0.408 6.408 10 N -0.348 5.348 11 C 0.136 3.864 12 H 0.074 0.926 13 C -0.198 4.198 14 C -0.647 4.647 15 H 0.077 0.923 16 C -0.178 4.178 17 N -0.517 5.517 18 Si 0.899 3.101 19 H -0.211 1.211 20 H -0.208 1.208 21 H -0.211 1.211 22 O -0.193 6.193 23 C 0.053 3.947 24 C -0.147 4.147 25 C -0.124 4.124 26 C -0.156 4.156 27 C -0.138 4.138 28 C -0.022 4.022 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.136 0.864 34 H 0.219 0.781 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.054 13.297 -5.560 14.972 hybrid contribution 0.019 0.738 -1.328 1.520 sum 4.073 14.034 -6.888 16.156 Atomic orbital electron populations 1.22028 0.90229 1.05546 1.05867 1.21027 0.90999 0.82007 0.74960 1.90501 1.69527 1.31159 1.48906 1.45822 1.04617 1.07240 1.70233 1.22734 0.98047 0.82218 1.01747 1.22842 0.81378 0.96986 0.99204 0.88401 1.19809 0.83737 0.87842 0.79749 1.90694 1.63668 1.40045 1.46347 1.47867 1.09427 1.14570 1.62912 1.18967 0.93428 0.81211 0.92775 0.92584 1.21991 0.99206 1.00778 0.97871 1.22139 0.93769 1.52866 0.95895 0.92264 1.26069 1.01346 0.91960 0.98459 1.70732 1.01216 1.39582 1.40176 0.83508 0.74119 0.76913 0.75583 1.21057 1.20848 1.21122 1.86199 1.21060 1.27361 1.84639 1.18756 0.91867 0.84372 0.99712 1.20451 0.90120 0.99812 1.04329 1.20959 0.99810 0.91887 0.99716 1.21067 0.93973 0.98105 1.02408 1.22010 0.93978 0.98811 0.99045 1.18060 0.82368 0.95156 1.06662 0.87793 0.88075 0.89448 0.88535 0.86448 0.78098 0.93992 0.94902 0.92803 0.90964 0.84617 0.85381 0.85621 0.81300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.64 36.00 0.35 -1.02 16 2 C 0.52 6.31 7.76 -10.99 -0.09 6.23 16 3 O -0.52 -7.74 13.81 5.54 0.08 -7.66 16 4 N -0.55 -7.30 3.01 -112.33 -0.34 -7.64 16 5 C 0.08 0.93 5.56 -3.32 -0.02 0.91 16 6 C 0.06 0.92 3.37 -27.61 -0.09 0.82 16 7 H 0.10 1.48 8.14 -51.92 -0.42 1.06 16 8 C 0.51 10.00 7.15 -10.99 -0.08 9.92 16 9 O -0.53 -12.79 16.18 -14.25 -0.23 -13.02 16 10 N -0.70 -13.53 5.04 -54.93 -0.28 -13.81 16 11 C 0.23 5.38 2.29 -69.08 -0.16 5.22 16 12 H 0.06 1.51 6.10 -51.93 -0.32 1.19 16 13 C -0.14 -2.80 9.46 37.16 0.35 -2.44 16 14 C -0.61 -14.89 8.50 -34.44 -0.29 -15.19 16 15 H 0.06 1.42 7.81 -52.48 -0.41 1.01 16 16 C 0.03 0.81 5.45 -17.82 -0.10 0.71 16 17 N -0.88 -24.80 13.63 55.43 0.76 -24.05 16 18 Si 1.07 22.50 29.91 -169.99 -5.08 17.41 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.29 -5.58 7.11 56.52 0.40 -5.18 16 22 O -0.28 -5.02 9.51 -39.21 -0.37 -5.39 16 23 C 0.10 1.59 6.52 -39.05 -0.25 1.33 16 24 C -0.13 -1.76 9.97 -39.42 -0.39 -2.15 16 25 C -0.10 -1.21 10.03 -39.58 -0.40 -1.60 16 26 C -0.14 -1.62 10.05 -39.56 -0.40 -2.01 16 27 C -0.12 -1.66 9.02 -39.45 -0.36 -2.01 16 28 C 0.07 1.06 6.34 -83.37 -0.53 0.53 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.55 6.05 -51.93 -0.31 0.23 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.12 1.08 5.74 -51.93 -0.30 0.78 16 34 H 0.39 6.46 8.50 -40.82 -0.35 6.11 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.28 8.06 6.65 -40.82 -0.27 7.78 16 39 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.17 2.45 4.92 -53.52 -0.26 2.19 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -32.49 350.45 -7.89 -40.37 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.24 Total: 9.25 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.45 Total: -0.75 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.14 Total: -45.50 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.53 Total: -26.07 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.08 Total: 17.41 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.49 -7.89 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751392225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.274 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds