Wall clock time and date at job start Tue Mar 31 2020 12:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21303 * 120.00037 * 2 1 4 4 N 1.34776 * 120.00342 * 179.97438 * 2 1 3 5 5 C 1.47317 * 121.07190 * 3.69076 * 4 2 1 6 6 C 1.53533 * 107.56410 * 221.88105 * 5 4 2 7 7 H 1.09010 * 109.57615 * 61.87927 * 6 5 4 8 8 C 1.50693 * 109.58033 * 182.13777 * 6 5 4 9 9 O 1.21293 * 119.99572 * 114.74058 * 8 6 5 10 10 N 1.34772 * 120.00568 * 294.74082 * 8 6 5 11 11 C 1.46504 * 120.00049 * 179.97438 * 10 8 6 12 12 H 1.08998 * 109.47008 * 35.00141 * 11 10 8 13 13 C 1.52997 * 109.47033 * 274.99769 * 11 10 8 14 14 C 1.50701 * 109.46777 * 154.99792 * 11 10 8 15 15 H 1.08005 * 119.99963 * 95.11043 * 14 11 10 16 16 C 1.37875 * 120.00410 * 275.10694 * 14 11 10 17 17 N 1.31511 * 119.99703 * 355.06263 * 16 14 11 18 18 Si 1.86801 * 120.00334 * 175.06902 * 16 14 11 19 19 H 1.48493 * 109.47175 * 89.99704 * 18 16 14 20 20 H 1.48494 * 109.46955 * 210.00007 * 18 16 14 21 21 H 1.48501 * 109.46851 * 329.99521 * 18 16 14 22 22 O 1.42952 * 108.93192 * 302.01490 * 6 5 4 23 23 C 1.35895 * 117.78407 * 49.35844 * 22 6 5 24 24 C 1.38713 * 119.66061 * 159.80724 * 23 22 6 25 25 C 1.38206 * 120.04769 * 179.82665 * 24 23 22 26 26 C 1.38283 * 120.29846 * 0.02562 * 25 24 23 27 27 C 1.38259 * 120.05756 * 0.06481 * 26 25 24 28 28 C 1.38583 * 119.87819 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47118 * 274.63501 * 1 2 3 30 30 H 1.08997 * 109.47722 * 34.63788 * 1 2 3 31 31 H 1.09004 * 109.47103 * 154.64062 * 1 2 3 32 32 H 1.09001 * 109.73498 * 102.43379 * 5 4 2 33 33 H 1.09000 * 109.94863 * 341.45908 * 5 4 2 34 34 H 0.97002 * 119.99641 * 359.97438 * 10 8 6 35 35 H 1.09006 * 109.47249 * 295.01908 * 13 11 10 36 36 H 1.09001 * 109.46989 * 55.01416 * 13 11 10 37 37 H 1.09002 * 109.47265 * 175.01536 * 13 11 10 38 38 H 0.97009 * 120.00077 * 5.06305 * 17 16 14 39 39 H 1.07994 * 119.97860 * 359.82991 * 24 23 22 40 40 H 1.07999 * 119.85081 * 179.97438 * 25 24 23 41 41 H 1.07996 * 119.97613 * 180.08299 * 26 25 24 42 42 H 1.07997 * 120.06142 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4706 -2.4553 -0.0801 6 6 2.1456 -3.4191 0.9061 7 1 2.0521 -3.0292 1.9198 8 6 1.4858 -4.7713 0.8224 9 8 2.1130 -5.7281 0.4193 10 7 0.1990 -4.9176 1.1953 11 6 -0.4425 -6.2322 1.1134 12 1 0.2869 -7.0076 1.3477 13 6 -0.9811 -6.4495 -0.3021 14 6 -1.5802 -6.2982 2.0995 15 1 -2.5869 -6.0751 1.7782 16 6 -1.3360 -6.6436 3.4117 17 7 -0.1281 -7.0095 3.7815 18 14 -2.7208 -6.5920 4.6644 19 1 -3.4018 -7.9110 4.7040 20 1 -2.1637 -6.2821 6.0055 21 1 -3.6976 -5.5419 4.2794 22 8 3.5286 -3.5387 0.5647 23 6 4.2338 -2.3939 0.3677 24 6 5.6181 -2.4171 0.4529 25 6 6.3434 -1.2582 0.2505 26 6 5.6955 -0.0709 -0.0371 27 6 4.3159 -0.0378 -0.1222 28 6 3.5838 -1.1969 0.0807 29 1 -0.3633 0.0830 1.0243 30 1 -0.3634 0.8455 -0.5841 31 1 -0.3633 -0.9287 -0.4402 32 1 1.5422 -2.8523 -1.0927 33 1 0.4238 -2.3205 0.1922 34 1 -0.3024 -4.1525 1.5180 35 1 -1.7733 -5.7285 -0.5040 36 1 -0.1744 -6.3140 -1.0225 37 1 -1.3792 -7.4605 -0.3882 38 1 0.6066 -6.9662 3.1495 39 1 6.1295 -3.3414 0.6775 40 1 7.4211 -1.2798 0.3180 41 1 6.2675 0.8313 -0.1957 42 1 3.8098 0.8893 -0.3472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751392225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:04 Heat of formation + Delta-G solvation = -88.837672 kcal Electronic energy + Delta-G solvation = -27138.459578 eV Core-core repulsion = 23276.428562 eV Total energy + Delta-G solvation = -3862.031016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.69583 -40.86446 -40.08540 -38.49549 -36.93815 -36.70919 -34.30440 -32.80011 -32.22397 -31.15810 -30.49183 -28.93503 -26.78257 -26.24894 -24.43944 -23.51958 -22.58972 -21.39451 -20.70025 -19.70740 -19.33794 -18.70075 -18.37944 -17.35859 -17.19168 -16.92272 -16.63295 -16.17723 -15.78075 -15.64324 -15.58339 -15.19405 -15.16272 -14.93696 -14.80450 -14.46765 -14.12238 -13.73562 -13.50528 -13.13842 -13.07501 -12.95764 -12.88223 -12.84434 -12.64482 -12.54489 -12.23301 -12.07814 -11.85824 -11.44297 -11.19285 -10.80604 -10.56085 -10.53670 -9.82270 -9.60889 -8.99669 -8.69677 -6.52779 0.12948 0.29132 1.26723 1.37446 1.50195 1.60318 1.61126 1.69892 1.83486 2.53945 2.58580 2.73393 3.10032 3.17930 3.26564 3.60141 3.64999 3.79704 3.84612 4.07851 4.21611 4.24832 4.29165 4.38575 4.48109 4.52590 4.58006 4.70879 4.72740 4.74961 4.93604 5.09865 5.17626 5.22059 5.32775 5.36015 5.49930 5.65389 5.77260 5.87426 6.00410 6.12336 6.22017 6.45020 6.78728 6.80898 7.32157 7.37285 8.65239 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.003737 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.482490 B = 7491.835098 C = 8176.391350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.554 6.554 4 N -0.556 5.556 5 C 0.085 3.915 6 C 0.064 3.936 7 H 0.106 0.894 8 C 0.509 3.491 9 O -0.581 6.581 10 N -0.686 5.686 11 C 0.235 3.765 12 H 0.006 0.994 13 C -0.130 4.130 14 C -0.607 4.607 15 H 0.071 0.929 16 C -0.016 4.016 17 N -0.922 5.922 18 Si 1.119 2.881 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.255 1.255 22 O -0.311 6.311 23 C 0.069 3.931 24 C -0.139 4.139 25 C -0.097 4.097 26 C -0.128 4.128 27 C -0.134 4.134 28 C 0.057 3.943 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.154 0.846 34 H 0.403 0.597 35 H 0.068 0.932 36 H 0.031 0.969 37 H 0.051 0.949 38 H 0.257 0.743 39 H 0.138 0.862 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.296 16.324 -7.207 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.307 3.693 3 O -0.433 6.433 4 N -0.281 5.281 5 C -0.037 4.037 6 C 0.004 3.996 7 H 0.123 0.877 8 C 0.293 3.707 9 O -0.461 6.461 10 N -0.337 5.337 11 C 0.135 3.865 12 H 0.024 0.976 13 C -0.188 4.188 14 C -0.645 4.645 15 H 0.089 0.911 16 C -0.218 4.218 17 N -0.557 5.557 18 Si 0.941 3.059 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.179 1.179 22 O -0.225 6.225 23 C 0.022 3.978 24 C -0.158 4.158 25 C -0.115 4.115 26 C -0.147 4.147 27 C -0.153 4.153 28 C -0.037 4.037 29 H 0.139 0.861 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.172 0.828 34 H 0.239 0.761 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.156 0.844 40 H 0.181 0.819 41 H 0.174 0.826 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.613 15.672 -5.971 16.973 hybrid contribution 0.572 0.052 -1.281 1.404 sum 3.185 15.724 -7.252 17.607 Atomic orbital electron populations 1.22128 0.86388 1.07151 1.07371 1.21913 0.92690 0.81058 0.73687 1.90485 1.70546 1.32006 1.50221 1.45963 1.04109 1.07757 1.70316 1.22748 0.99257 0.81163 1.00578 1.22631 0.81291 0.94897 1.00831 0.87657 1.20258 0.83267 0.88866 0.78343 1.90668 1.64701 1.42224 1.48505 1.47246 1.09737 1.14004 1.62735 1.18748 0.92060 0.81316 0.94404 0.97585 1.21873 0.99777 1.01474 0.95716 1.22401 0.94507 1.51761 0.95871 0.91058 1.27444 1.02245 0.91123 1.01023 1.70885 1.01909 1.43078 1.39827 0.82917 0.72100 0.77948 0.72979 1.20537 1.21800 1.17881 1.86131 1.21868 1.29085 1.85387 1.19044 0.92582 0.84195 1.01941 1.20758 0.89728 1.00998 1.04303 1.21330 1.01418 0.90724 0.98051 1.21471 0.93390 0.99381 1.00437 1.22134 0.95061 0.98273 0.99840 1.18275 0.83561 0.95092 1.06782 0.86093 0.86751 0.87596 0.88620 0.82824 0.76070 0.91347 0.94973 0.93015 0.93192 0.84371 0.81876 0.82565 0.81822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.64 71.23 0.69 -1.38 16 2 C 0.51 11.57 7.76 87.65 0.68 12.25 16 3 O -0.55 -15.76 13.81 -3.10 -0.04 -15.80 16 4 N -0.56 -14.03 3.01 -627.69 -1.89 -15.92 16 5 C 0.08 1.98 5.56 86.40 0.48 2.46 16 6 C 0.06 2.07 3.37 30.03 0.10 2.17 16 7 H 0.11 3.18 8.14 -2.38 -0.02 3.16 16 8 C 0.51 20.48 7.15 87.66 0.63 21.11 16 9 O -0.58 -29.34 16.18 15.86 0.26 -29.08 16 10 N -0.69 -26.51 5.04 -446.09 -2.25 -28.76 16 11 C 0.24 10.88 2.29 44.24 0.10 10.98 16 12 H 0.01 0.35 6.10 -2.39 -0.01 0.33 16 13 C -0.13 -5.08 9.46 71.98 0.68 -4.39 16 14 C -0.61 -29.26 8.50 25.60 0.22 -29.04 16 15 H 0.07 3.24 7.81 -2.91 -0.02 3.21 16 16 C -0.02 -0.83 5.45 84.65 0.46 -0.37 16 17 N -0.92 -53.26 13.63 21.45 0.29 -52.97 16 18 Si 1.12 44.32 29.91 68.60 2.05 46.37 16 19 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 20 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 22 O -0.31 -11.51 9.51 -73.44 -0.70 -12.21 16 23 C 0.07 2.21 6.52 22.62 0.15 2.36 16 24 C -0.14 -3.78 9.97 22.38 0.22 -3.56 16 25 C -0.10 -2.03 10.03 22.27 0.22 -1.81 16 26 C -0.13 -2.76 10.05 22.29 0.22 -2.54 16 27 C -0.13 -3.60 9.02 22.36 0.20 -3.40 16 28 C 0.06 1.68 6.34 38.06 0.24 1.92 16 29 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 0.88 6.05 -2.38 -0.01 0.86 16 32 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.15 2.33 5.74 -2.39 -0.01 2.32 16 34 H 0.40 12.84 8.50 -92.71 -0.79 12.05 16 35 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.26 15.71 6.65 -92.70 -0.62 15.09 16 39 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 40 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.16 4.64 4.92 -19.24 -0.09 4.55 16 Total: -1.00 -74.75 350.45 3.37 -71.39 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.35 Total: 30.23 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.30 Total: 6.75 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -3.85 Total: -97.65 kcal Atomic # 8 Polarization: -56.61 SS G_CDS: -0.48 Total: -57.09 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.05 Total: 46.37 kcal Total: -74.75 3.37 -71.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751392225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.451 kcal (2) G-P(sol) polarization free energy of solvation -74.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds