Wall clock time and date at job start Tue Mar 31 2020 12:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00255 * 2 1 4 4 C 1.53000 * 109.47409 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47182 * 299.99982 * 4 3 2 6 6 C 1.47199 * 109.47047 * 60.00147 * 4 3 2 7 7 N 3.58019 * 143.44430 * 267.05709 * 2 1 3 8 8 N 1.46502 * 109.46985 * 180.02562 * 4 3 2 9 9 C 1.34780 * 119.99811 * 180.02562 * 8 4 3 10 10 O 1.21279 * 119.99828 * 359.97438 * 9 8 4 11 11 C 1.50698 * 119.99901 * 179.97438 * 9 8 4 12 12 C 1.50701 * 109.47124 * 179.97438 * 11 9 8 13 13 C 1.38325 * 119.96581 * 269.72782 * 12 11 9 14 14 C 1.38274 * 120.13758 * 179.76475 * 13 12 11 15 15 C 1.38119 * 120.07047 * 0.51191 * 14 13 12 16 16 C 1.38859 * 119.92758 * 359.74021 * 15 14 13 17 17 O 1.35755 * 120.06541 * 179.97438 * 16 15 14 18 18 C 1.34825 * 116.99940 * 354.48391 * 17 16 15 19 19 H 1.07993 * 120.00269 * 5.05926 * 18 17 16 20 20 C 1.38667 * 119.99916 * 185.06183 * 18 17 16 21 21 N 1.31549 * 119.99939 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99671 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47396 * 89.99975 * 22 20 18 24 24 H 1.48500 * 109.46899 * 210.00278 * 22 20 18 25 25 H 1.48500 * 109.47022 * 329.99838 * 22 20 18 26 26 C 1.38072 * 119.96448 * 90.00039 * 12 11 9 27 27 H 1.08993 * 109.47551 * 59.99618 * 1 2 3 28 28 H 1.08993 * 109.47006 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46757 * 299.99423 * 1 2 3 30 30 H 1.09007 * 109.47085 * 60.00107 * 3 2 1 31 31 H 1.09004 * 109.47123 * 300.00583 * 3 2 1 32 32 H 1.08997 * 109.47073 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47008 * 300.00512 * 5 4 3 34 34 H 1.09005 * 109.47013 * 59.99615 * 5 4 3 35 35 H 0.96999 * 120.00105 * 359.97438 * 8 4 3 36 36 H 1.08995 * 109.47219 * 299.99835 * 11 9 8 37 37 H 1.09007 * 109.47233 * 59.99729 * 11 9 8 38 38 H 1.08004 * 119.92903 * 359.97438 * 13 12 11 39 39 H 1.08004 * 119.96509 * 180.25341 * 14 13 12 40 40 H 1.07997 * 120.03657 * 179.76819 * 15 14 13 41 41 H 0.97004 * 119.99982 * 179.97438 * 21 20 18 42 42 H 1.07998 * 120.04064 * 359.95693 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9875 0.4251 1.2483 6 6 3.9693 0.4544 -1.2029 7 7 4.3049 -0.1095 -2.1296 8 7 4.1313 2.5230 0.0000 9 6 5.4718 2.6639 -0.0010 10 8 6.1846 1.6827 -0.0018 11 6 6.0847 4.0406 -0.0009 12 6 7.5870 3.9216 -0.0014 13 6 8.2766 3.8725 1.1967 14 6 9.6546 3.7585 1.2004 15 6 10.3477 3.7039 0.0069 16 6 9.6588 3.7582 -1.1974 17 8 10.3372 3.7052 -2.3721 18 6 11.6836 3.7155 -2.3022 19 1 12.1748 3.6816 -1.3411 20 6 12.4378 3.7696 -3.4646 21 7 13.7515 3.7791 -3.3965 22 14 11.5882 3.8291 -5.1272 23 1 11.3500 5.2436 -5.5111 24 1 12.4494 3.1777 -6.1466 25 1 10.2898 3.1130 -5.0454 26 6 8.2741 3.8674 -1.1978 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 5.0740 0.3387 1.2476 33 1 3.6662 0.9658 2.1384 34 1 3.5441 -0.5707 1.2483 35 1 3.5612 3.3077 0.0003 36 1 5.7624 4.5818 -0.8904 37 1 5.7637 4.5812 0.8895 38 1 7.7372 3.9200 2.1312 39 1 10.1899 3.7163 2.1375 40 1 11.4243 3.6186 0.0105 41 1 14.2791 3.8166 -4.2097 42 1 7.7355 3.9095 -2.1330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760576097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:55 Heat of formation + Delta-G solvation = -44.484561 kcal Electronic energy + Delta-G solvation = -25726.063095 eV Core-core repulsion = 21865.955375 eV Total energy + Delta-G solvation = -3860.107721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.60809 -39.20343 -38.55189 -36.96746 -36.40891 -35.16459 -32.63274 -32.30851 -31.24152 -29.40460 -27.99209 -27.20536 -26.21866 -25.12920 -23.49209 -21.94768 -21.42917 -20.29835 -18.37511 -17.75248 -17.58511 -16.97987 -16.91535 -16.19554 -15.84252 -15.52438 -15.16477 -14.82350 -14.55893 -14.07464 -13.91596 -13.74789 -13.66896 -13.59695 -13.45124 -12.86635 -12.62157 -12.55131 -12.46298 -12.34537 -12.16121 -12.10092 -11.98317 -11.66638 -11.50521 -11.28501 -10.83930 -10.78037 -10.69444 -10.30777 -10.12585 -9.86042 -9.67002 -9.35561 -8.83239 -8.13617 -7.32995 -6.37173 -4.03647 1.90424 2.24944 2.34734 2.50135 2.67174 3.00257 3.25750 3.28547 3.45507 3.51321 3.65613 4.18203 4.28296 4.36686 4.48519 4.68472 4.72182 4.80604 4.84336 4.89206 5.01436 5.09187 5.15884 5.19716 5.31410 5.38454 5.47743 5.53671 5.69598 5.85007 5.97486 6.03231 6.14508 6.27497 6.46928 6.54627 6.80743 7.11023 7.13019 7.22634 7.34722 7.49761 7.63633 7.84555 8.04809 8.08308 8.98451 9.61556 10.70595 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.002818 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.201050 B = 9934.683590 C =10873.734742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.064 3.936 4 C 0.284 3.716 5 C -0.160 4.160 6 C 0.204 3.796 7 N -0.405 5.405 8 N -0.730 5.730 9 C 0.516 3.484 10 O -0.499 6.499 11 C -0.090 4.090 12 C -0.038 4.038 13 C -0.187 4.187 14 C -0.076 4.076 15 C -0.216 4.216 16 C 0.160 3.840 17 O -0.219 6.219 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.904 3.096 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.174 4.174 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.408 0.592 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.279 0.721 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.953 0.511 11.705 30.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.015 4.015 4 C 0.194 3.806 5 C -0.219 4.219 6 C -0.116 4.116 7 N -0.080 5.080 8 N -0.388 5.388 9 C 0.303 3.697 10 O -0.370 6.370 11 C -0.130 4.130 12 C -0.039 4.039 13 C -0.206 4.206 14 C -0.094 4.094 15 C -0.236 4.236 16 C 0.108 3.892 17 O -0.124 6.124 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.193 4.193 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.244 0.756 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -26.638 -1.250 9.932 28.456 hybrid contribution -0.675 0.826 -0.391 1.136 sum -27.312 -0.423 9.540 28.934 Atomic orbital electron populations 1.22814 0.79869 1.03416 1.00331 1.87911 1.20477 1.25957 1.95499 1.22575 0.89921 0.86530 1.02430 1.17318 0.91753 0.82655 0.88851 1.22212 1.04947 1.00749 0.93944 1.28890 0.93743 0.94713 0.94282 1.81134 1.07406 1.08146 1.11316 1.46058 1.07554 1.06540 1.78630 1.20948 0.80920 0.92548 0.75258 1.90790 1.60342 1.40273 1.45618 1.20576 0.93966 0.93443 1.04970 1.18614 0.91780 1.00407 0.93101 1.20404 0.94195 1.09921 0.96067 1.20736 0.93872 0.97824 0.96993 1.21304 1.01186 1.09159 0.91910 1.19015 0.91116 0.93148 0.85895 1.83573 1.21304 1.80944 1.26586 1.20763 0.76754 1.51968 0.96886 0.87626 1.24452 0.94748 0.95743 0.99049 1.69644 1.03936 1.48263 1.30041 0.86201 0.80139 0.78933 0.81777 1.19897 1.20783 1.18376 1.19947 0.91632 1.10439 0.97306 0.93733 0.89105 0.93496 0.90283 0.91683 0.89245 0.90544 0.90132 0.75643 0.88002 0.87773 0.87608 0.87148 0.84993 0.91110 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.38 -2.85 9.64 -35.23 -0.34 -3.19 16 3 C 0.06 0.35 4.89 37.16 0.18 0.53 16 4 C 0.28 2.56 0.84 -134.61 -0.11 2.44 16 5 C -0.16 -1.44 8.21 37.16 0.31 -1.14 16 6 C 0.20 2.86 12.39 -20.78 -0.26 2.60 16 7 N -0.40 -7.02 18.53 42.13 0.78 -6.24 16 8 N -0.73 -5.66 5.09 -50.22 -0.26 -5.92 16 9 C 0.52 6.30 7.24 -10.99 -0.08 6.22 16 10 O -0.50 -8.70 13.24 5.56 0.07 -8.63 16 11 C -0.09 -0.98 5.83 -29.04 -0.17 -1.15 16 12 C -0.04 -0.64 4.37 -104.65 -0.46 -1.10 16 13 C -0.19 -3.11 9.70 -39.54 -0.38 -3.49 16 14 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 15 C -0.22 -4.84 9.17 -39.40 -0.36 -5.20 16 16 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 17 O -0.22 -6.02 8.59 0.05 0.00 -6.02 16 18 C -0.39 -11.29 9.95 30.89 0.31 -10.99 16 19 H 0.11 3.12 5.44 -52.49 -0.29 2.84 16 20 C 0.06 1.82 5.49 -17.51 -0.10 1.73 16 21 N -0.88 -26.06 13.96 55.48 0.77 -25.29 16 22 Si 0.90 22.50 28.62 -169.99 -4.86 17.63 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.26 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.17 -3.58 9.65 -39.40 -0.38 -3.96 16 27 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 1.10 6.17 -51.93 -0.32 0.78 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.72 7.68 -51.93 -0.40 0.32 16 35 H 0.41 1.36 8.47 -40.82 -0.35 1.02 16 36 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 38 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.13 3.09 5.64 -52.49 -0.30 2.79 16 41 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 365.30 15.07 5.51 5.51 Total: -1.00 -37.56 365.30 -4.80 -42.36 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.43 Total: 0.25 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.05 Total: -10.47 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 1.30 Total: -37.44 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.27 Total: -17.84 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.86 Total: 17.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.56 -4.80 -42.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760576097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.122 kcal (2) G-P(sol) polarization free energy of solvation -37.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds