Wall clock time and date at job start Tue Mar 31 2020 12:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00255 * 2 1 4 4 C 1.53000 * 109.47409 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47182 * 299.99982 * 4 3 2 6 6 C 1.47199 * 109.47047 * 60.00147 * 4 3 2 7 7 N 3.58019 * 143.44430 * 267.05709 * 2 1 3 8 8 N 1.46502 * 109.46985 * 180.02562 * 4 3 2 9 9 C 1.34780 * 119.99811 * 180.02562 * 8 4 3 10 10 O 1.21279 * 119.99828 * 359.97438 * 9 8 4 11 11 C 1.50698 * 119.99901 * 179.97438 * 9 8 4 12 12 C 1.50701 * 109.47124 * 179.97438 * 11 9 8 13 13 C 1.38325 * 119.96581 * 269.72782 * 12 11 9 14 14 C 1.38274 * 120.13758 * 179.76475 * 13 12 11 15 15 C 1.38119 * 120.07047 * 0.51191 * 14 13 12 16 16 C 1.38859 * 119.92758 * 359.74021 * 15 14 13 17 17 O 1.35755 * 120.06541 * 179.97438 * 16 15 14 18 18 C 1.34825 * 116.99940 * 354.48391 * 17 16 15 19 19 H 1.07993 * 120.00269 * 5.05926 * 18 17 16 20 20 C 1.38667 * 119.99916 * 185.06183 * 18 17 16 21 21 N 1.31549 * 119.99939 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99671 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47396 * 89.99975 * 22 20 18 24 24 H 1.48500 * 109.46899 * 210.00278 * 22 20 18 25 25 H 1.48500 * 109.47022 * 329.99838 * 22 20 18 26 26 C 1.38072 * 119.96448 * 90.00039 * 12 11 9 27 27 H 1.08993 * 109.47551 * 59.99618 * 1 2 3 28 28 H 1.08993 * 109.47006 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46757 * 299.99423 * 1 2 3 30 30 H 1.09007 * 109.47085 * 60.00107 * 3 2 1 31 31 H 1.09004 * 109.47123 * 300.00583 * 3 2 1 32 32 H 1.08997 * 109.47073 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47008 * 300.00512 * 5 4 3 34 34 H 1.09005 * 109.47013 * 59.99615 * 5 4 3 35 35 H 0.96999 * 120.00105 * 359.97438 * 8 4 3 36 36 H 1.08995 * 109.47219 * 299.99835 * 11 9 8 37 37 H 1.09007 * 109.47233 * 59.99729 * 11 9 8 38 38 H 1.08004 * 119.92903 * 359.97438 * 13 12 11 39 39 H 1.08004 * 119.96509 * 180.25341 * 14 13 12 40 40 H 1.07997 * 120.03657 * 179.76819 * 15 14 13 41 41 H 0.97004 * 119.99982 * 179.97438 * 21 20 18 42 42 H 1.07998 * 120.04064 * 359.95693 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9875 0.4251 1.2483 6 6 3.9693 0.4544 -1.2029 7 7 4.3049 -0.1095 -2.1296 8 7 4.1313 2.5230 0.0000 9 6 5.4718 2.6639 -0.0010 10 8 6.1846 1.6827 -0.0018 11 6 6.0847 4.0406 -0.0009 12 6 7.5870 3.9216 -0.0014 13 6 8.2766 3.8725 1.1967 14 6 9.6546 3.7585 1.2004 15 6 10.3477 3.7039 0.0069 16 6 9.6588 3.7582 -1.1974 17 8 10.3372 3.7052 -2.3721 18 6 11.6836 3.7155 -2.3022 19 1 12.1748 3.6816 -1.3411 20 6 12.4378 3.7696 -3.4646 21 7 13.7515 3.7791 -3.3965 22 14 11.5882 3.8291 -5.1272 23 1 11.3500 5.2436 -5.5111 24 1 12.4494 3.1777 -6.1466 25 1 10.2898 3.1130 -5.0454 26 6 8.2741 3.8674 -1.1978 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 5.0740 0.3387 1.2476 33 1 3.6662 0.9658 2.1384 34 1 3.5441 -0.5707 1.2483 35 1 3.5612 3.3077 0.0003 36 1 5.7624 4.5818 -0.8904 37 1 5.7637 4.5812 0.8895 38 1 7.7372 3.9200 2.1312 39 1 10.1899 3.7163 2.1375 40 1 11.4243 3.6186 0.0105 41 1 14.2791 3.8166 -4.2097 42 1 7.7355 3.9095 -2.1330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760576097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:54 Heat of formation + Delta-G solvation = -73.385631 kcal Electronic energy + Delta-G solvation = -25727.316340 eV Core-core repulsion = 21865.955375 eV Total energy + Delta-G solvation = -3861.360965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.52877 -40.77391 -39.33786 -38.32436 -37.58124 -36.12843 -34.50571 -33.72970 -32.20485 -31.03494 -28.46659 -28.37629 -27.20758 -26.65571 -24.24432 -23.41587 -22.80699 -21.57456 -19.69567 -19.22291 -18.87879 -18.25711 -17.40458 -16.86861 -16.78652 -16.62464 -16.46911 -16.08956 -15.79673 -15.62018 -15.45721 -15.08142 -14.85302 -14.55443 -14.43792 -14.36745 -14.15938 -13.96742 -13.76979 -13.26511 -13.07250 -13.03014 -12.82635 -12.66264 -12.58765 -12.52384 -12.43351 -12.32467 -12.05359 -11.95514 -11.32246 -10.95422 -10.85514 -10.64801 -10.48000 -9.66381 -9.05621 -8.53049 -6.25115 0.47578 0.71421 1.25469 1.29105 1.32996 1.46883 1.60189 1.68597 2.15472 2.24398 2.74659 2.76268 3.00326 3.06283 3.18330 3.63912 3.74395 3.83736 4.08814 4.15320 4.32033 4.43399 4.46826 4.50909 4.57152 4.60217 4.68205 4.69368 4.72973 4.75825 4.82428 4.97302 4.99601 5.23911 5.28322 5.30862 5.38954 5.66017 5.73783 5.76374 5.91487 6.14216 6.26294 6.44507 6.53781 6.81609 7.24684 7.58050 8.58896 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.002818 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.201050 B = 9934.683590 C =10873.734742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.067 3.933 4 C 0.280 3.720 5 C -0.155 4.155 6 C 0.223 3.777 7 N -0.480 5.480 8 N -0.701 5.701 9 C 0.516 3.484 10 O -0.561 6.561 11 C -0.086 4.086 12 C -0.029 4.029 13 C -0.164 4.164 14 C -0.079 4.079 15 C -0.242 4.242 16 C 0.114 3.886 17 O -0.251 6.251 18 C -0.398 4.398 19 H 0.081 0.919 20 C 0.010 3.990 21 N -0.923 5.923 22 Si 0.969 3.031 23 H -0.259 1.259 24 H -0.266 1.266 25 H -0.273 1.273 26 C -0.185 4.185 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.435 0.565 36 H 0.128 0.872 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.141 0.859 40 H 0.104 0.896 41 H 0.285 0.715 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.861 2.410 14.073 35.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.011 4.011 4 C 0.190 3.810 5 C -0.214 4.214 6 C -0.096 4.096 7 N -0.157 5.157 8 N -0.360 5.360 9 C 0.304 3.696 10 O -0.437 6.437 11 C -0.125 4.125 12 C -0.029 4.029 13 C -0.182 4.182 14 C -0.097 4.097 15 C -0.261 4.261 16 C 0.066 3.934 17 O -0.159 6.159 18 C -0.475 4.475 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.791 3.209 23 H -0.183 1.183 24 H -0.190 1.190 25 H -0.198 1.198 26 C -0.204 4.204 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.142 0.858 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.276 0.724 36 H 0.146 0.854 37 H 0.177 0.823 38 H 0.175 0.825 39 H 0.159 0.841 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -31.630 0.700 12.338 33.958 hybrid contribution 0.589 0.220 -0.789 1.009 sum -31.041 0.920 11.549 33.132 Atomic orbital electron populations 1.22962 0.78285 1.03869 1.01700 1.87870 1.22247 1.27272 1.95831 1.22723 0.86648 0.86413 1.05309 1.17757 0.94360 0.82485 0.86429 1.22177 1.02548 1.01378 0.95310 1.30075 0.91720 0.93503 0.94338 1.81134 1.09983 1.10530 1.14017 1.45697 1.06477 1.07218 1.76627 1.21154 0.81944 0.92144 0.74320 1.90811 1.62051 1.42137 1.48683 1.20732 0.89273 0.93471 1.09048 1.19259 0.95341 0.96892 0.91454 1.21071 0.93365 1.05584 0.98184 1.21149 0.95335 0.96704 0.96519 1.21324 1.00255 1.11111 0.93405 1.19653 0.92723 0.95461 0.85591 1.83510 1.20074 1.83858 1.28467 1.20714 0.78069 1.52378 0.96322 0.90180 1.25255 0.95421 0.95685 1.02503 1.69723 1.05072 1.50351 1.31228 0.85247 0.78410 0.79518 0.77679 1.18343 1.19040 1.19768 1.20305 0.90207 1.10461 0.99434 0.93188 0.89327 0.91202 0.85784 0.90296 0.92764 0.86902 0.90579 0.72425 0.85369 0.82269 0.82459 0.84125 0.87793 0.90563 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.39 16 2 O -0.41 -4.96 9.64 -148.98 -1.44 -6.39 16 3 C 0.07 0.43 4.89 71.98 0.35 0.78 16 4 C 0.28 4.11 0.84 1.80 0.00 4.12 16 5 C -0.16 -2.38 8.21 71.98 0.59 -1.79 16 6 C 0.22 6.07 12.39 89.45 1.11 7.18 16 7 N -0.48 -17.09 18.53 20.00 0.37 -16.72 16 8 N -0.70 -7.43 5.09 -431.20 -2.19 -9.63 16 9 C 0.52 10.51 7.24 87.66 0.63 11.14 16 10 O -0.56 -18.64 13.24 -3.03 -0.04 -18.68 16 11 C -0.09 -1.39 5.83 29.10 0.17 -1.22 16 12 C -0.03 -0.87 4.37 -19.88 -0.09 -0.95 16 13 C -0.16 -4.76 9.70 22.30 0.22 -4.54 16 14 C -0.08 -2.82 10.04 22.25 0.22 -2.60 16 15 C -0.24 -11.34 9.17 22.39 0.21 -11.14 16 16 C 0.11 5.77 6.65 22.58 0.15 5.92 16 17 O -0.25 -14.71 8.59 -22.74 -0.20 -14.91 16 18 C -0.40 -24.91 9.95 67.92 0.68 -24.23 16 19 H 0.08 5.22 5.44 -2.91 -0.02 5.21 16 20 C 0.01 0.58 5.49 84.84 0.47 1.05 16 21 N -0.92 -57.37 13.96 21.62 0.30 -57.07 16 22 Si 0.97 48.31 28.62 68.60 1.96 50.27 16 23 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.27 -14.00 7.11 99.48 0.71 -13.30 16 26 C -0.18 -7.56 9.65 22.39 0.22 -7.34 16 27 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.12 -0.26 8.14 -2.38 -0.02 -0.28 16 31 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.05 1.26 6.17 -2.39 -0.01 1.25 16 33 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 1.23 7.68 -2.38 -0.02 1.21 16 35 H 0.43 -0.01 8.47 -92.71 -0.79 -0.80 16 36 H 0.13 1.53 8.08 -2.39 -0.02 1.51 16 37 H 0.16 0.93 8.08 -2.38 -0.02 0.92 16 38 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.10 5.36 5.64 -2.91 -0.02 5.35 16 41 H 0.28 16.20 8.31 -92.71 -0.77 15.43 16 42 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -93.75 365.30 5.22 -88.53 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.27 Total: 6.84 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 6.17 Total: -22.25 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -1.52 Total: -83.41 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.67 Total: -39.98 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.96 Total: 50.27 kcal Total: -93.75 5.22 -88.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760576097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.145 kcal (2) G-P(sol) polarization free energy of solvation -93.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds