Wall clock time and date at job start Tue Mar 31 2020 12:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46959 * 2 1 4 4 C 1.50699 * 109.46953 * 239.99824 * 2 1 3 5 5 N 1.28015 * 119.99886 * 120.00266 * 4 2 1 6 6 N 1.40099 * 119.99996 * 179.97438 * 5 4 2 7 7 C 1.34775 * 119.99715 * 179.97438 * 6 5 4 8 8 O 1.21294 * 120.00010 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99998 * 180.02562 * 7 6 5 10 10 H 1.08998 * 109.70505 * 54.41180 * 9 7 6 11 11 C 1.53475 * 109.74385 * 293.80622 * 9 7 6 12 12 O 1.43172 * 108.25371 * 180.57366 * 11 9 7 13 13 C 1.36103 * 116.71822 * 46.16793 * 12 11 9 14 14 C 1.38708 * 119.40142 * 162.97826 * 13 12 11 15 15 C 1.38194 * 120.06410 * 179.91687 * 14 13 12 16 16 C 1.38254 * 120.11778 * 359.44212 * 15 14 13 17 17 C 1.38188 * 120.10767 * 0.63459 * 16 15 14 18 18 C 1.38702 * 120.07199 * 359.69407 * 17 16 15 19 19 O 1.36105 * 119.39990 * 179.84090 * 18 17 16 20 20 C 1.53002 * 109.46880 * 120.00140 * 2 1 3 21 21 C 1.50709 * 109.46995 * 294.99994 * 20 2 1 22 22 H 1.08000 * 119.99537 * 0.02562 * 21 20 2 23 23 C 1.37875 * 119.99774 * 180.02562 * 21 20 2 24 24 N 1.31516 * 119.99554 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00155 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47038 * 90.00247 * 25 23 21 27 27 H 1.48500 * 109.46972 * 210.00188 * 25 23 21 28 28 H 1.48499 * 109.47093 * 329.99611 * 25 23 21 29 29 H 1.08996 * 109.47247 * 299.99871 * 1 2 3 30 30 H 1.09004 * 109.47102 * 60.00443 * 1 2 3 31 31 H 1.09006 * 109.47020 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.00525 * 299.99633 * 4 2 1 33 33 H 0.96996 * 120.00095 * 0.02562 * 6 5 4 34 34 H 1.09004 * 109.70336 * 300.25757 * 11 9 7 35 35 H 1.08991 * 109.70965 * 60.83706 * 11 9 7 36 36 H 1.08002 * 119.96266 * 359.63227 * 14 13 12 37 37 H 1.08003 * 119.93543 * 179.71188 * 15 14 13 38 38 H 1.07992 * 119.94498 * 180.34635 * 16 15 14 39 39 H 1.08000 * 119.96842 * 179.71812 * 17 16 15 40 40 H 1.08997 * 109.47387 * 54.99588 * 20 2 1 41 41 H 1.09002 * 109.46964 * 175.00396 * 20 2 1 42 42 H 0.96998 * 120.00069 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 2.7683 -0.0883 -2.0731 6 7 3.2357 -0.7489 -3.2167 7 6 4.0102 -0.0938 -4.1041 8 8 4.3028 1.0676 -3.9123 9 6 4.5125 -0.8042 -5.3346 10 1 3.6722 -1.2345 -5.8793 11 6 5.4901 -1.9156 -4.9289 12 8 5.9567 -2.5591 -6.1197 13 6 6.3480 -1.7482 -7.1403 14 6 7.1280 -2.2683 -8.1626 15 6 7.5315 -1.4576 -9.2065 16 6 7.1496 -0.1293 -9.2410 17 6 6.3739 0.3956 -8.2248 18 6 5.9711 -0.4108 -7.1706 19 8 5.2101 0.1211 -6.1755 20 6 2.0400 -0.7213 1.2493 21 6 1.6412 0.0570 2.4767 22 1 1.0799 0.9742 2.3757 23 6 1.9931 -0.4017 3.7283 24 7 1.6456 0.2778 4.7993 25 14 2.9634 -1.9884 3.9028 26 1 4.4169 -1.6850 3.8781 27 1 2.6160 -2.6420 5.1902 28 1 2.6286 -2.8995 2.7790 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7715 -1.7445 -1.4014 33 1 3.0014 -1.6776 -3.3702 34 1 6.3334 -1.4844 -4.3895 35 1 4.9799 -2.6403 -4.2945 36 1 7.4240 -3.3067 -8.1403 37 1 8.1426 -1.8636 -9.9990 38 1 7.4618 0.5003 -10.0609 39 1 6.0807 1.4347 -8.2517 40 1 1.6053 -1.7198 1.2952 41 1 3.1263 -0.7995 1.2056 42 1 1.8934 -0.0447 5.6799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765994232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:50 Heat of formation + Delta-G solvation = -39.959713 kcal Electronic energy + Delta-G solvation = -25212.311392 eV Core-core repulsion = 21352.399883 eV Total energy + Delta-G solvation = -3859.911509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.87022 -39.74258 -38.01035 -37.74192 -37.06401 -35.01373 -32.83423 -32.07738 -31.06854 -30.67863 -28.88137 -27.62124 -25.85897 -24.27887 -23.25770 -22.34623 -21.41799 -20.79423 -19.45252 -19.16192 -18.23639 -18.00361 -17.14262 -16.72639 -16.59838 -16.02564 -15.64828 -15.17376 -14.99903 -14.58112 -14.49182 -14.27199 -14.24168 -13.81849 -13.64795 -13.41966 -12.85822 -12.57913 -12.38686 -12.33519 -11.92862 -11.79288 -11.61588 -11.31855 -11.10581 -11.04136 -10.87440 -10.31277 -10.18795 -10.08083 -9.90016 -9.72915 -9.21665 -9.07846 -8.82157 -8.58877 -8.51556 -6.08815 -4.07447 0.87558 0.88085 1.77202 1.84631 2.52579 2.65095 2.96710 3.26681 3.30907 3.34490 3.34721 3.63736 3.99871 4.13590 4.20484 4.39773 4.51111 4.60432 4.82717 4.87496 4.91631 4.97812 5.00642 5.05974 5.24586 5.39612 5.71978 5.74798 5.76152 5.87390 5.95608 6.05582 6.19090 6.27364 6.40512 6.56228 6.69762 6.84247 6.90118 6.94527 7.09809 7.23367 7.46328 7.69912 8.28458 8.46933 8.95664 9.52368 11.04172 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.002166 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.141608 B =12924.480787 C =13456.598307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.033 4.033 3 H 0.087 0.913 4 C 0.109 3.891 5 N -0.251 5.251 6 N -0.588 5.588 7 C 0.539 3.461 8 O -0.473 6.473 9 C 0.042 3.958 10 H 0.114 0.886 11 C 0.033 3.967 12 O -0.300 6.300 13 C 0.045 3.955 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.114 4.114 17 C -0.110 4.110 18 C 0.053 3.947 19 O -0.277 6.277 20 C -0.003 4.003 21 C -0.517 4.517 22 H 0.078 0.922 23 C 0.068 3.932 24 N -0.900 5.900 25 Si 0.878 3.122 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.266 1.266 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.380 0.620 34 H 0.089 0.911 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.021 0.979 41 H 0.014 0.986 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 -8.428 -28.235 30.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.054 4.054 3 H 0.105 0.895 4 C -0.105 4.105 5 N -0.052 5.052 6 N -0.331 5.331 7 C 0.322 3.678 8 O -0.342 6.342 9 C -0.021 4.021 10 H 0.131 0.869 11 C -0.043 4.043 12 O -0.214 6.214 13 C 0.000 4.000 14 C -0.130 4.130 15 C -0.135 4.135 16 C -0.132 4.132 17 C -0.128 4.128 18 C 0.008 3.992 19 O -0.190 6.190 20 C -0.041 4.041 21 C -0.555 4.555 22 H 0.096 0.904 23 C -0.134 4.134 24 N -0.539 5.539 25 Si 0.705 3.295 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.191 1.191 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.122 0.878 33 H 0.217 0.783 34 H 0.107 0.893 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.039 0.961 41 H 0.032 0.968 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.455 -6.751 -28.220 30.223 hybrid contribution 0.007 -2.268 0.382 2.300 sum 8.462 -9.019 -27.837 30.461 Atomic orbital electron populations 1.21690 0.93683 1.01562 1.01833 1.20214 0.95955 1.00308 0.88962 0.89455 1.26879 0.91341 0.97970 0.94343 1.74715 1.12352 1.23643 0.94503 1.46876 1.51546 1.13535 1.21162 1.19276 0.78902 0.87252 0.82371 1.90795 1.53790 1.15631 1.73984 1.22815 0.96391 0.90587 0.92257 0.86866 1.23586 0.98395 0.95880 0.86428 1.86341 1.79703 1.32820 1.22513 1.18965 1.00071 0.89532 0.91418 1.20461 0.97843 1.01135 0.93587 1.20956 1.00613 0.93692 0.98234 1.20957 0.98315 0.95600 0.98325 1.20507 1.00300 1.00474 0.91535 1.19017 0.96866 0.92148 0.91154 1.86413 1.59604 1.32104 1.40921 1.19613 0.95967 0.96232 0.92301 1.21030 1.35980 1.09758 0.88748 0.90441 1.24998 0.95548 0.96910 0.95917 1.69899 1.46739 1.39143 0.98082 0.86820 0.80759 0.84352 0.77552 1.20344 1.21371 1.19116 0.90087 0.94273 0.93132 0.87784 0.78262 0.89276 0.85351 0.84646 0.84916 0.84839 0.84437 0.96082 0.96776 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.99 37.16 0.33 -1.78 16 2 C -0.03 -0.61 2.75 -91.77 -0.25 -0.86 16 3 H 0.09 1.74 8.11 -51.93 -0.42 1.32 16 4 C 0.11 1.66 9.66 -13.87 -0.13 1.52 16 5 N -0.25 -4.13 10.92 32.67 0.36 -3.77 16 6 N -0.59 -7.42 6.24 31.22 0.19 -7.23 16 7 C 0.54 7.53 7.31 -10.98 -0.08 7.45 16 8 O -0.47 -9.09 16.86 -14.15 -0.24 -9.33 16 9 C 0.04 0.44 3.44 -27.64 -0.09 0.34 16 10 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 11 C 0.03 0.29 6.53 37.40 0.24 0.53 16 12 O -0.30 -2.97 10.42 -32.86 -0.34 -3.31 16 13 C 0.04 0.46 6.49 -39.13 -0.25 0.21 16 14 C -0.11 -0.92 9.96 -39.42 -0.39 -1.31 16 15 C -0.12 -0.79 10.04 -39.59 -0.40 -1.18 16 16 C -0.11 -0.81 10.04 -39.59 -0.40 -1.20 16 17 C -0.11 -1.02 9.96 -39.43 -0.39 -1.41 16 18 C 0.05 0.60 6.49 -39.14 -0.25 0.34 16 19 O -0.28 -3.60 9.62 -47.03 -0.45 -4.06 16 20 C 0.00 -0.06 3.50 -27.88 -0.10 -0.15 16 21 C -0.52 -13.83 8.96 -34.44 -0.31 -14.13 16 22 H 0.08 2.22 7.30 -52.49 -0.38 1.83 16 23 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 24 N -0.90 -26.92 13.96 55.43 0.77 -26.14 16 25 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 29 H 0.08 1.49 6.95 -51.93 -0.36 1.12 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.11 1.22 8.00 -52.49 -0.42 0.80 16 33 H 0.38 3.09 8.58 -182.60 -1.57 1.52 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.13 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 39 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 41 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -35.05 360.73 -8.40 -43.46 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.89 Total: -1.42 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.58 Total: -9.83 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 1.33 Total: -37.14 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -1.03 Total: -16.70 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.05 -8.40 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765994232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.499 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds